Ggra1476.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1476.t1
Unique NameGgra1476.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:195633..196244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S33_274V6.1
PFAMsArf
Max annot lvl35493|Streptophyta
KEGG koko:K07952
Evalue1.64e-42
EggNOG OGsKOG0076@1|root,KOG0076@2759|Eukaryota,37I4N@33090|Viridiplantae,3G7R4@35493|Streptophyta
DescriptionBelongs to the small GTPase superfamily. Arf family
COG categoryU
BRITEko00000,ko04031,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1476Ggra1476Gracilaria gracilis GNS1m malegenetig00000844_pilon 195633..196244 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1476.t1.start1Ggra1476.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 195633..195635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1476.t1.CDS1Ggra1476.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 195633..196244 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1476.t1.exon1Ggra1476.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 195633..196244 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1476.t1.stop1Ggra1476.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 196242..196244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1476.t1Ggra1476.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 195633..196244 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1476.t1 ID=Ggra1476.t1|Name=Ggra1476.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=204bp
MFSLVQGFYDELTHVPERSVALLGVEAAGKSSILEWLKLYFPLTSKSSTV
SRPTALKRITPTVGLNVAKLRFPNEKLLVWDLGGARALRPIWNRYVAEAE
AIIWVVDSTDIGRMEDSRETLKKLIASPHLKHSPLLVFANKQDLENAIDP
VKVSLALDLLSDAENRPQCVQPCSAETGTGLVEGMEWLVKNLGGDPKIEM
RIP*
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spliced messenger RNA

>Ggra1476.t1 ID=Ggra1476.t1|Name=Ggra1476.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=612bp|location=Sequence derived from alignment at tig00000844_pilon:195633..196244+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCGCTGGTGCAAGGCTTTTATGACGAGCTCACCCACGTCCCCGA
ACGCTCCGTAGCTCTGTTAGGCGTCGAAGCTGCAGGCAAATCTTCAATTC
TTGAATGGTTGAAATTGTACTTTCCTCTCACATCTAAAAGTAGCACCGTA
TCGCGTCCGACAGCACTCAAGAGAATCACTCCCACTGTCGGCCTTAATGT
GGCCAAACTTCGTTTTCCGAATGAGAAGTTGCTCGTCTGGGATCTTGGAG
GAGCGCGAGCACTCCGCCCAATTTGGAATCGATATGTCGCTGAAGCGGAA
GCAATCATCTGGGTTGTAGACTCTACGGATATTGGGCGCATGGAAGACTC
GAGGGAAACGTTGAAAAAGCTCATCGCCAGCCCTCATTTGAAACACAGCC
CCTTACTAGTGTTTGCCAACAAGCAGGATCTTGAAAACGCAATAGACCCT
GTCAAAGTAAGTCTGGCCCTGGACTTGCTTTCCGACGCAGAAAACCGCCC
GCAATGCGTGCAACCATGCTCAGCAGAAACGGGTACGGGACTCGTGGAAG
GCATGGAATGGCTGGTTAAGAACTTGGGAGGAGACCCGAAAATTGAAATG
CGAATACCATGA
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protein sequence of Ggra1476.t1

>Ggra1476.t1 ID=Ggra1476.t1|Name=Ggra1476.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=204bp
MFSLVQGFYDELTHVPERSVALLGVEAAGKSSILEWLKLYFPLTSKSSTV
SRPTALKRITPTVGLNVAKLRFPNEKLLVWDLGGARALRPIWNRYVAEAE
AIIWVVDSTDIGRMEDSRETLKKLIASPHLKHSPLLVFANKQDLENAIDP
VKVSLALDLLSDAENRPQCVQPCSAETGTGLVEGMEWLVKNLGGDPKIEM
RIP*
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mRNA from alignment at tig00000844_pilon:195633..196244+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1476.t1 ID=Ggra1476.t1|Name=Ggra1476.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=612bp|location=Sequence derived from alignment at tig00000844_pilon:195633..196244+ (Gracilaria gracilis GNS1m male)
ATGTTTTCGCTGGTGCAAGGCTTTTATGACGAGCTCACCCACGTCCCCGA
ACGCTCCGTAGCTCTGTTAGGCGTCGAAGCTGCAGGCAAATCTTCAATTC
TTGAATGGTTGAAATTGTACTTTCCTCTCACATCTAAAAGTAGCACCGTA
TCGCGTCCGACAGCACTCAAGAGAATCACTCCCACTGTCGGCCTTAATGT
GGCCAAACTTCGTTTTCCGAATGAGAAGTTGCTCGTCTGGGATCTTGGAG
GAGCGCGAGCACTCCGCCCAATTTGGAATCGATATGTCGCTGAAGCGGAA
GCAATCATCTGGGTTGTAGACTCTACGGATATTGGGCGCATGGAAGACTC
GAGGGAAACGTTGAAAAAGCTCATCGCCAGCCCTCATTTGAAACACAGCC
CCTTACTAGTGTTTGCCAACAAGCAGGATCTTGAAAACGCAATAGACCCT
GTCAAAGTAAGTCTGGCCCTGGACTTGCTTTCCGACGCAGAAAACCGCCC
GCAATGCGTGCAACCATGCTCAGCAGAAACGGGTACGGGACTCGTGGAAG
GCATGGAATGGCTGGTTAAGAACTTGGGAGGAGACCCGAAAATTGAAATG
CGAATACCATGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:195633..196244+

>Ggra1476.t1 ID=Ggra1476.t1|Name=Ggra1476.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=612bp|location=Sequence derived from alignment at tig00000844_pilon:195633..196244+ (Gracilaria gracilis GNS1m male)
ATGTTTTCGCTGGTGCAAGGCTTTTATGACGAGCTCACCCACGTCCCCGA
ACGCTCCGTAGCTCTGTTAGGCGTCGAAGCTGCAGGCAAATCTTCAATTC
TTGAATGGTTGAAATTGTACTTTCCTCTCACATCTAAAAGTAGCACCGTA
TCGCGTCCGACAGCACTCAAGAGAATCACTCCCACTGTCGGCCTTAATGT
GGCCAAACTTCGTTTTCCGAATGAGAAGTTGCTCGTCTGGGATCTTGGAG
GAGCGCGAGCACTCCGCCCAATTTGGAATCGATATGTCGCTGAAGCGGAA
GCAATCATCTGGGTTGTAGACTCTACGGATATTGGGCGCATGGAAGACTC
GAGGGAAACGTTGAAAAAGCTCATCGCCAGCCCTCATTTGAAACACAGCC
CCTTACTAGTGTTTGCCAACAAGCAGGATCTTGAAAACGCAATAGACCCT
GTCAAAGTAAGTCTGGCCCTGGACTTGCTTTCCGACGCAGAAAACCGCCC
GCAATGCGTGCAACCATGCTCAGCAGAAACGGGTACGGGACTCGTGGAAG
GCATGGAATGGCTGGTTAAGAACTTGGGAGGAGACCCGAAAATTGAAATG
CGAATACCATGA
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