Ggra1475.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1475.t1
Unique Name	Ggra1475.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	638

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:192918..194831 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708230.1
PFAMs	EMP70
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K17086
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005911,GO:0008150,GO:0009506,GO:0012505,GO:0016020,GO:0016021,GO:0030054,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033157,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0050789,GO:0051049,GO:0051050,GO:0051222,GO:0051223,GO:0055044,GO:0060341,GO:0065007,GO:0070201,GO:0070861,GO:0070863,GO:0090087,GO:0090316,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1903827,GO:1903829,GO:1904951,GO:2000008,GO:2000010
Evalue	6.27e-221
EggNOG OGs	KOG1278@1\|root,KOG1278@2759\|Eukaryota
Description	positive regulation of protein exit from endoplasmic reticulum
COG category	S
BRITE	ko00000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1475	Ggra1475	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 192918..194831 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1475.t1.start1	Ggra1475.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 192918..192920 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1475.t1.CDS1	Ggra1475.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 192918..194831 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1475.t1.exon1	Ggra1475.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 192918..194831 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1475.t1.stop1	Ggra1475.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 194829..194831 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1475.t1	Ggra1475.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 192918..194831 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:192918..194831+
coding sequence from alignment at tig00000844_pilon:192918..194831+

mRNA sequence

>Ggra1475.t1 ID=Ggra1475.t1|Name=Ggra1475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=638bp
MSVSLFFALMVTCAHAFYLPGIAPVSYEEGTELEVMANKLTSPKNKLPYD
YYSLPFCGSESKKDLRSKPVNLGQVLMGDRMKPTEYDFQMKIPAHCKVLC
TKKLNKKQVKRLRKRIKEDYSVRLNLDNMPVVIKGETATRHEAYRFGYDI
GHVEENGKLYINNHLKFKVFYNDPKEVSDTFNALADIDTGSSEGYRIVGF
EVETYSVNHKLDNSGKPTSHTCPVSNGMEPMEVKEDQPITFTYDVEYVVS
SIRWATRWDKLLETNPELKQIQWFSIVNSLMISLFLTALVGTVLLRTVLR
DFSRYNALEEEDEEDITGWKLVHGDVFRTPQHPVLLSIFCGSGSQTLWMV
TITLFFALLGFLSPAYRGGLITTMLSLWVLASAVCGYSSARVYSSFENGQ
HRKLVTMGSAFLFPGLTFALFFVLNLFVWGSGSSGAVPFTTLVLLLFMWF
GISVPLVFAGAYIGYKSKPYEFPCRTNQIPRQIPAAPLNIPQVAYVILAG
ILPFGTVFMELVFILNSIWQNQILYLFGMLSIVFAILVVTCAEMSIVFTY
LTLAAERWTWWWQAFGGSASAGLYMFLYSVYYIGTQAATDHMPFVSTLMF
MVYSAVVSAAFALMCGSIGFFSSFWFVRKIYSNIRVD*

spliced messenger RNA

>Ggra1475.t1 ID=Ggra1475.t1|Name=Ggra1475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1914bp|location=Sequence derived from alignment at tig00000844_pilon:192918..194831+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTGAGTCTTTTTTTCGCGCTTATGGTCACATGTGCGCATGCTTT
CTATCTACCGGGTATTGCTCCAGTTAGTTATGAAGAAGGAACAGAGCTTG
AAGTTATGGCCAACAAACTTACATCTCCAAAGAACAAACTCCCGTACGAT
TACTATTCCCTTCCCTTCTGTGGATCAGAGAGCAAGAAAGATCTCCGTTC
TAAGCCGGTCAACCTTGGCCAGGTACTGATGGGCGATCGAATGAAGCCTA
CGGAGTATGACTTTCAGATGAAGATTCCAGCTCATTGCAAAGTGTTATGC
ACGAAGAAGCTCAATAAGAAGCAAGTCAAGCGTCTGCGCAAGAGAATTAA
GGAAGACTACTCTGTACGCCTCAATCTGGACAACATGCCAGTTGTAATCA
AGGGGGAGACTGCCACTCGTCATGAAGCGTATCGCTTTGGCTACGATATT
GGCCATGTCGAAGAGAATGGAAAACTTTACATTAACAACCACCTCAAGTT
CAAAGTCTTTTACAATGATCCGAAAGAGGTGTCCGATACGTTCAATGCAC
TTGCAGATATTGACACAGGTTCGTCGGAGGGATACAGAATCGTTGGCTTT
GAGGTCGAGACTTATAGCGTAAACCACAAACTTGACAACAGTGGGAAGCC
CACTTCTCACACATGCCCAGTTTCCAATGGAATGGAGCCCATGGAAGTTA
AGGAGGACCAACCTATTACTTTCACATACGATGTGGAGTACGTTGTTTCG
AGCATTCGATGGGCTACACGCTGGGACAAGTTGCTGGAAACGAATCCGGA
GCTCAAGCAGATTCAGTGGTTCTCTATCGTCAACTCGCTGATGATCTCTC
TGTTTTTGACAGCACTTGTCGGAACCGTTCTGCTTCGAACCGTGCTTCGC
GACTTTTCTCGATACAACGCGCTGGAGGAGGAAGACGAGGAAGATATCAC
TGGATGGAAACTCGTTCACGGTGATGTATTCCGAACACCCCAGCACCCAG
TTCTTTTGTCCATCTTCTGCGGTTCTGGATCGCAAACGTTGTGGATGGTT
ACGATTACTCTGTTCTTTGCGCTGCTTGGATTTTTGTCTCCAGCCTACCG
TGGCGGATTGATCACCACGATGCTTTCTCTGTGGGTGTTGGCTTCCGCTG
TTTGTGGATACTCTTCTGCTCGCGTTTATTCGTCCTTCGAAAATGGACAG
CATCGCAAGCTTGTTACTATGGGCTCCGCATTTCTTTTCCCAGGTCTTAC
TTTCGCACTTTTCTTTGTGCTCAACTTGTTTGTATGGGGATCAGGGTCTT
CTGGAGCAGTTCCTTTCACTACATTGGTTTTGCTGCTATTCATGTGGTTC
GGAATCTCAGTTCCACTTGTGTTTGCCGGAGCATACATTGGTTACAAGTC
GAAACCGTATGAATTCCCATGCCGCACAAATCAGATTCCTCGTCAAATTC
CTGCTGCCCCTCTCAACATCCCTCAAGTGGCGTACGTGATCTTGGCTGGG
ATCCTTCCGTTTGGTACAGTGTTCATGGAGTTGGTATTCATCTTGAACTC
AATATGGCAAAACCAGATCCTGTACTTATTTGGCATGCTCTCCATCGTGT
TCGCCATACTTGTTGTAACCTGCGCCGAAATGAGTATTGTATTTACGTAC
CTCACATTGGCGGCCGAAAGATGGACATGGTGGTGGCAAGCATTTGGTGG
ATCAGCATCAGCTGGTCTGTACATGTTTTTGTACAGTGTGTACTACATTG
GAACTCAAGCGGCGACAGATCACATGCCGTTTGTGAGCACGTTAATGTTC
ATGGTATACAGCGCTGTGGTGAGTGCAGCGTTTGCGCTCATGTGCGGATC
AATTGGCTTCTTCTCATCATTCTGGTTTGTGAGGAAGATTTATTCCAATA
TCAGAGTGGACTAA

protein sequence of Ggra1475.t1

>Ggra1475.t1 ID=Ggra1475.t1|Name=Ggra1475.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=638bp
MSVSLFFALMVTCAHAFYLPGIAPVSYEEGTELEVMANKLTSPKNKLPYD
YYSLPFCGSESKKDLRSKPVNLGQVLMGDRMKPTEYDFQMKIPAHCKVLC
TKKLNKKQVKRLRKRIKEDYSVRLNLDNMPVVIKGETATRHEAYRFGYDI
GHVEENGKLYINNHLKFKVFYNDPKEVSDTFNALADIDTGSSEGYRIVGF
EVETYSVNHKLDNSGKPTSHTCPVSNGMEPMEVKEDQPITFTYDVEYVVS
SIRWATRWDKLLETNPELKQIQWFSIVNSLMISLFLTALVGTVLLRTVLR
DFSRYNALEEEDEEDITGWKLVHGDVFRTPQHPVLLSIFCGSGSQTLWMV
TITLFFALLGFLSPAYRGGLITTMLSLWVLASAVCGYSSARVYSSFENGQ
HRKLVTMGSAFLFPGLTFALFFVLNLFVWGSGSSGAVPFTTLVLLLFMWF
GISVPLVFAGAYIGYKSKPYEFPCRTNQIPRQIPAAPLNIPQVAYVILAG
ILPFGTVFMELVFILNSIWQNQILYLFGMLSIVFAILVVTCAEMSIVFTY
LTLAAERWTWWWQAFGGSASAGLYMFLYSVYYIGTQAATDHMPFVSTLMF
MVYSAVVSAAFALMCGSIGFFSSFWFVRKIYSNIRVD*

mRNA from alignment at tig00000844_pilon:192918..194831+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1475.t1 ID=Ggra1475.t1|Name=Ggra1475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1914bp|location=Sequence derived from alignment at tig00000844_pilon:192918..194831+ (Gracilaria gracilis GNS1m male)
ATGTCTGTGAGTCTTTTTTTCGCGCTTATGGTCACATGTGCGCATGCTTT
CTATCTACCGGGTATTGCTCCAGTTAGTTATGAAGAAGGAACAGAGCTTG
AAGTTATGGCCAACAAACTTACATCTCCAAAGAACAAACTCCCGTACGAT
TACTATTCCCTTCCCTTCTGTGGATCAGAGAGCAAGAAAGATCTCCGTTC
TAAGCCGGTCAACCTTGGCCAGGTACTGATGGGCGATCGAATGAAGCCTA
CGGAGTATGACTTTCAGATGAAGATTCCAGCTCATTGCAAAGTGTTATGC
ACGAAGAAGCTCAATAAGAAGCAAGTCAAGCGTCTGCGCAAGAGAATTAA
GGAAGACTACTCTGTACGCCTCAATCTGGACAACATGCCAGTTGTAATCA
AGGGGGAGACTGCCACTCGTCATGAAGCGTATCGCTTTGGCTACGATATT
GGCCATGTCGAAGAGAATGGAAAACTTTACATTAACAACCACCTCAAGTT
CAAAGTCTTTTACAATGATCCGAAAGAGGTGTCCGATACGTTCAATGCAC
TTGCAGATATTGACACAGGTTCGTCGGAGGGATACAGAATCGTTGGCTTT
GAGGTCGAGACTTATAGCGTAAACCACAAACTTGACAACAGTGGGAAGCC
CACTTCTCACACATGCCCAGTTTCCAATGGAATGGAGCCCATGGAAGTTA
AGGAGGACCAACCTATTACTTTCACATACGATGTGGAGTACGTTGTTTCG
AGCATTCGATGGGCTACACGCTGGGACAAGTTGCTGGAAACGAATCCGGA
GCTCAAGCAGATTCAGTGGTTCTCTATCGTCAACTCGCTGATGATCTCTC
TGTTTTTGACAGCACTTGTCGGAACCGTTCTGCTTCGAACCGTGCTTCGC
GACTTTTCTCGATACAACGCGCTGGAGGAGGAAGACGAGGAAGATATCAC
TGGATGGAAACTCGTTCACGGTGATGTATTCCGAACACCCCAGCACCCAG
TTCTTTTGTCCATCTTCTGCGGTTCTGGATCGCAAACGTTGTGGATGGTT
ACGATTACTCTGTTCTTTGCGCTGCTTGGATTTTTGTCTCCAGCCTACCG
TGGCGGATTGATCACCACGATGCTTTCTCTGTGGGTGTTGGCTTCCGCTG
TTTGTGGATACTCTTCTGCTCGCGTTTATTCGTCCTTCGAAAATGGACAG
CATCGCAAGCTTGTTACTATGGGCTCCGCATTTCTTTTCCCAGGTCTTAC
TTTCGCACTTTTCTTTGTGCTCAACTTGTTTGTATGGGGATCAGGGTCTT
CTGGAGCAGTTCCTTTCACTACATTGGTTTTGCTGCTATTCATGTGGTTC
GGAATCTCAGTTCCACTTGTGTTTGCCGGAGCATACATTGGTTACAAGTC
GAAACCGTATGAATTCCCATGCCGCACAAATCAGATTCCTCGTCAAATTC
CTGCTGCCCCTCTCAACATCCCTCAAGTGGCGTACGTGATCTTGGCTGGG
ATCCTTCCGTTTGGTACAGTGTTCATGGAGTTGGTATTCATCTTGAACTC
AATATGGCAAAACCAGATCCTGTACTTATTTGGCATGCTCTCCATCGTGT
TCGCCATACTTGTTGTAACCTGCGCCGAAATGAGTATTGTATTTACGTAC
CTCACATTGGCGGCCGAAAGATGGACATGGTGGTGGCAAGCATTTGGTGG
ATCAGCATCAGCTGGTCTGTACATGTTTTTGTACAGTGTGTACTACATTG
GAACTCAAGCGGCGACAGATCACATGCCGTTTGTGAGCACGTTAATGTTC
ATGGTATACAGCGCTGTGGTGAGTGCAGCGTTTGCGCTCATGTGCGGATC
AATTGGCTTCTTCTCATCATTCTGGTTTGTGAGGAAGATTTATTCCAATA
TCAGAGTGGACTAA

Coding sequence (CDS) from alignment at tig00000844_pilon:192918..194831+

>Ggra1475.t1 ID=Ggra1475.t1|Name=Ggra1475.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1914bp|location=Sequence derived from alignment at tig00000844_pilon:192918..194831+ (Gracilaria gracilis GNS1m male)
ATGTCTGTGAGTCTTTTTTTCGCGCTTATGGTCACATGTGCGCATGCTTT
CTATCTACCGGGTATTGCTCCAGTTAGTTATGAAGAAGGAACAGAGCTTG
AAGTTATGGCCAACAAACTTACATCTCCAAAGAACAAACTCCCGTACGAT
TACTATTCCCTTCCCTTCTGTGGATCAGAGAGCAAGAAAGATCTCCGTTC
TAAGCCGGTCAACCTTGGCCAGGTACTGATGGGCGATCGAATGAAGCCTA
CGGAGTATGACTTTCAGATGAAGATTCCAGCTCATTGCAAAGTGTTATGC
ACGAAGAAGCTCAATAAGAAGCAAGTCAAGCGTCTGCGCAAGAGAATTAA
GGAAGACTACTCTGTACGCCTCAATCTGGACAACATGCCAGTTGTAATCA
AGGGGGAGACTGCCACTCGTCATGAAGCGTATCGCTTTGGCTACGATATT
GGCCATGTCGAAGAGAATGGAAAACTTTACATTAACAACCACCTCAAGTT
CAAAGTCTTTTACAATGATCCGAAAGAGGTGTCCGATACGTTCAATGCAC
TTGCAGATATTGACACAGGTTCGTCGGAGGGATACAGAATCGTTGGCTTT
GAGGTCGAGACTTATAGCGTAAACCACAAACTTGACAACAGTGGGAAGCC
CACTTCTCACACATGCCCAGTTTCCAATGGAATGGAGCCCATGGAAGTTA
AGGAGGACCAACCTATTACTTTCACATACGATGTGGAGTACGTTGTTTCG
AGCATTCGATGGGCTACACGCTGGGACAAGTTGCTGGAAACGAATCCGGA
GCTCAAGCAGATTCAGTGGTTCTCTATCGTCAACTCGCTGATGATCTCTC
TGTTTTTGACAGCACTTGTCGGAACCGTTCTGCTTCGAACCGTGCTTCGC
GACTTTTCTCGATACAACGCGCTGGAGGAGGAAGACGAGGAAGATATCAC
TGGATGGAAACTCGTTCACGGTGATGTATTCCGAACACCCCAGCACCCAG
TTCTTTTGTCCATCTTCTGCGGTTCTGGATCGCAAACGTTGTGGATGGTT
ACGATTACTCTGTTCTTTGCGCTGCTTGGATTTTTGTCTCCAGCCTACCG
TGGCGGATTGATCACCACGATGCTTTCTCTGTGGGTGTTGGCTTCCGCTG
TTTGTGGATACTCTTCTGCTCGCGTTTATTCGTCCTTCGAAAATGGACAG
CATCGCAAGCTTGTTACTATGGGCTCCGCATTTCTTTTCCCAGGTCTTAC
TTTCGCACTTTTCTTTGTGCTCAACTTGTTTGTATGGGGATCAGGGTCTT
CTGGAGCAGTTCCTTTCACTACATTGGTTTTGCTGCTATTCATGTGGTTC
GGAATCTCAGTTCCACTTGTGTTTGCCGGAGCATACATTGGTTACAAGTC
GAAACCGTATGAATTCCCATGCCGCACAAATCAGATTCCTCGTCAAATTC
CTGCTGCCCCTCTCAACATCCCTCAAGTGGCGTACGTGATCTTGGCTGGG
ATCCTTCCGTTTGGTACAGTGTTCATGGAGTTGGTATTCATCTTGAACTC
AATATGGCAAAACCAGATCCTGTACTTATTTGGCATGCTCTCCATCGTGT
TCGCCATACTTGTTGTAACCTGCGCCGAAATGAGTATTGTATTTACGTAC
CTCACATTGGCGGCCGAAAGATGGACATGGTGGTGGCAAGCATTTGGTGG
ATCAGCATCAGCTGGTCTGTACATGTTTTTGTACAGTGTGTACTACATTG
GAACTCAAGCGGCGACAGATCACATGCCGTTTGTGAGCACGTTAATGTTC
ATGGTATACAGCGCTGTGGTGAGTGCAGCGTTTGCGCTCATGTGCGGATC
AATTGGCTTCTTCTCATCATTCTGGTTTGTGAGGAAGATTTATTCCAATA
TCAGAGTGGACTAA