Ggra1474.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1474.t1
Unique NameGgra1474.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length400
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:190579..191778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706380.1
Preferred nameDPAGT1
PFAMsGlycos_transf_4
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00467
KEGG koko:K00749,ko:K01001,ko:K01183
KEGG ReactionR01206,R02334,R05969
KEGG Pathwayko00510,ko00520,ko01100,map00510,map00520,map01100
KEGG ModuleM00055
GOsGO:0003674,GO:0003824,GO:0003975,GO:0003976,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006040,GO:0006047,GO:0006066,GO:0006091,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006489,GO:0006490,GO:0006491,GO:0006629,GO:0006644,GO:0006720,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009060,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0012505,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016093,GO:0016094,GO:0016740,GO:0016772,GO:0016780,GO:0019348,GO:0019408,GO:0019538,GO:0019637,GO:0022607,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0034641,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043541,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046165,GO:0046465,GO:0046483,GO:0051259,GO:0055086,GO:0055114,GO:0065003,GO:0070085,GO:0071704,GO:0071840,GO:0090407,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
Evalue1.47e-139
EggNOG OGsCOG0472@1|root,KOG2788@2759|Eukaryota
EC2.4.1.183,2.7.8.15,3.2.1.14
Descriptionphospho-N-acetylmuramoyl-pentapeptide-transferase activity
COG categoryM
CAZyGH18,GT5
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1474Ggra1474Gracilaria gracilis GNS1m malegenetig00000844_pilon 190579..191778 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1474.t1.start1Ggra1474.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 190579..190581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1474.t1.CDS1Ggra1474.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 190579..191778 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1474.t1.exon1Ggra1474.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 190579..191778 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1474.t1.stop1Ggra1474.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 191776..191778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1474.t1Ggra1474.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 190579..191778 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1474.t1 ID=Ggra1474.t1|Name=Ggra1474.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=400bp
MGFRVLTSSIVFMVYSFICHESWKAGMLPRIIFGGVLSIASYAAVSYFIS
AMVPLFLEAGRFGKDINKRGTPAGEQRIPEPLGLVPATVYIMILCILHVF
AHYNGDARLYTAAMACVTFMTLLGFADDVLDLRWRYKLVLPLIASMPLLV
NYTGKTTVILPRVIRPLVGRIASLFGGGLVYSVSGRLVDLGAAYYVYMAM
LSIFCTNAINIYAGINGLEVGQSIVIAIFVTIHNSLNLSSDVPKDNLQLL
RDHHTFSLDMMLPFTAACLGLISHNWYPSKVFVGDTFCYFAGMTFAMGSI
LGHYSTTLLLLFIPQIFNFVYSLPQLFGIVPCPRHRLPIFNKSTGRLEGV
KSHLNLVNLVLLITGPLHERTLCITLLVLQVICCSLGLIVRAVFLRHFS*
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spliced messenger RNA

>Ggra1474.t1 ID=Ggra1474.t1|Name=Ggra1474.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000844_pilon:190579..191778+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTTCCGAGTGCTCACATCCTCGATCGTGTTTATGGTTTACTCGTT
TATATGCCACGAGTCTTGGAAGGCTGGCATGTTACCACGCATCATCTTCG
GCGGTGTATTGTCAATCGCATCATATGCTGCCGTTTCTTATTTCATATCG
GCCATGGTCCCCCTTTTCCTTGAAGCTGGAAGGTTTGGAAAGGACATTAA
CAAGCGAGGTACGCCTGCGGGTGAACAGAGAATACCTGAACCTTTAGGAC
TGGTACCCGCAACCGTTTACATCATGATCCTCTGCATATTGCACGTCTTC
GCTCATTACAACGGTGATGCACGCTTGTACACAGCCGCGATGGCGTGTGT
CACTTTTATGACCCTGCTCGGTTTTGCAGACGACGTGTTGGATCTGAGAT
GGCGATACAAACTTGTGCTTCCGCTCATAGCTAGCATGCCATTGCTCGTC
AATTATACTGGCAAAACAACCGTGATTCTACCCCGCGTTATCCGTCCGCT
GGTCGGTCGAATCGCGAGTCTGTTTGGGGGTGGTCTTGTCTACAGCGTGT
CCGGAAGATTAGTCGATCTGGGCGCGGCGTATTACGTTTACATGGCTATG
CTAAGCATTTTCTGCACTAACGCAATCAACATTTATGCAGGCATCAACGG
ACTAGAAGTGGGGCAATCAATCGTTATTGCGATTTTCGTTACCATTCACA
ACTCGCTCAACTTGTCATCCGATGTGCCGAAGGACAATTTGCAGCTTCTT
CGAGATCATCACACATTTTCATTGGATATGATGCTTCCATTTACCGCGGC
ATGTCTTGGACTGATTTCTCACAACTGGTATCCGTCCAAGGTATTCGTTG
GCGATACCTTTTGTTATTTTGCTGGAATGACGTTCGCGATGGGAAGTATT
CTGGGTCATTACTCTACTACATTGTTGCTGCTGTTTATTCCACAGATTTT
CAACTTCGTTTACTCTCTGCCTCAACTGTTCGGTATTGTACCATGTCCAA
GACATCGACTTCCAATTTTCAATAAGAGCACGGGACGCCTGGAAGGTGTA
AAGTCTCACCTCAACCTCGTTAACCTCGTACTGTTGATAACGGGCCCTCT
TCATGAGAGGACTCTTTGCATCACTTTGCTTGTACTGCAGGTTATTTGTT
GTTCTCTTGGATTGATTGTTCGAGCAGTGTTTTTACGACATTTTTCATAA
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protein sequence of Ggra1474.t1

>Ggra1474.t1 ID=Ggra1474.t1|Name=Ggra1474.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=400bp
MGFRVLTSSIVFMVYSFICHESWKAGMLPRIIFGGVLSIASYAAVSYFIS
AMVPLFLEAGRFGKDINKRGTPAGEQRIPEPLGLVPATVYIMILCILHVF
AHYNGDARLYTAAMACVTFMTLLGFADDVLDLRWRYKLVLPLIASMPLLV
NYTGKTTVILPRVIRPLVGRIASLFGGGLVYSVSGRLVDLGAAYYVYMAM
LSIFCTNAINIYAGINGLEVGQSIVIAIFVTIHNSLNLSSDVPKDNLQLL
RDHHTFSLDMMLPFTAACLGLISHNWYPSKVFVGDTFCYFAGMTFAMGSI
LGHYSTTLLLLFIPQIFNFVYSLPQLFGIVPCPRHRLPIFNKSTGRLEGV
KSHLNLVNLVLLITGPLHERTLCITLLVLQVICCSLGLIVRAVFLRHFS*
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mRNA from alignment at tig00000844_pilon:190579..191778+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1474.t1 ID=Ggra1474.t1|Name=Ggra1474.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000844_pilon:190579..191778+ (Gracilaria gracilis GNS1m male)
ATGGGTTTCCGAGTGCTCACATCCTCGATCGTGTTTATGGTTTACTCGTT
TATATGCCACGAGTCTTGGAAGGCTGGCATGTTACCACGCATCATCTTCG
GCGGTGTATTGTCAATCGCATCATATGCTGCCGTTTCTTATTTCATATCG
GCCATGGTCCCCCTTTTCCTTGAAGCTGGAAGGTTTGGAAAGGACATTAA
CAAGCGAGGTACGCCTGCGGGTGAACAGAGAATACCTGAACCTTTAGGAC
TGGTACCCGCAACCGTTTACATCATGATCCTCTGCATATTGCACGTCTTC
GCTCATTACAACGGTGATGCACGCTTGTACACAGCCGCGATGGCGTGTGT
CACTTTTATGACCCTGCTCGGTTTTGCAGACGACGTGTTGGATCTGAGAT
GGCGATACAAACTTGTGCTTCCGCTCATAGCTAGCATGCCATTGCTCGTC
AATTATACTGGCAAAACAACCGTGATTCTACCCCGCGTTATCCGTCCGCT
GGTCGGTCGAATCGCGAGTCTGTTTGGGGGTGGTCTTGTCTACAGCGTGT
CCGGAAGATTAGTCGATCTGGGCGCGGCGTATTACGTTTACATGGCTATG
CTAAGCATTTTCTGCACTAACGCAATCAACATTTATGCAGGCATCAACGG
ACTAGAAGTGGGGCAATCAATCGTTATTGCGATTTTCGTTACCATTCACA
ACTCGCTCAACTTGTCATCCGATGTGCCGAAGGACAATTTGCAGCTTCTT
CGAGATCATCACACATTTTCATTGGATATGATGCTTCCATTTACCGCGGC
ATGTCTTGGACTGATTTCTCACAACTGGTATCCGTCCAAGGTATTCGTTG
GCGATACCTTTTGTTATTTTGCTGGAATGACGTTCGCGATGGGAAGTATT
CTGGGTCATTACTCTACTACATTGTTGCTGCTGTTTATTCCACAGATTTT
CAACTTCGTTTACTCTCTGCCTCAACTGTTCGGTATTGTACCATGTCCAA
GACATCGACTTCCAATTTTCAATAAGAGCACGGGACGCCTGGAAGGTGTA
AAGTCTCACCTCAACCTCGTTAACCTCGTACTGTTGATAACGGGCCCTCT
TCATGAGAGGACTCTTTGCATCACTTTGCTTGTACTGCAGGTTATTTGTT
GTTCTCTTGGATTGATTGTTCGAGCAGTGTTTTTACGACATTTTTCATAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:190579..191778+

>Ggra1474.t1 ID=Ggra1474.t1|Name=Ggra1474.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1200bp|location=Sequence derived from alignment at tig00000844_pilon:190579..191778+ (Gracilaria gracilis GNS1m male)
ATGGGTTTCCGAGTGCTCACATCCTCGATCGTGTTTATGGTTTACTCGTT
TATATGCCACGAGTCTTGGAAGGCTGGCATGTTACCACGCATCATCTTCG
GCGGTGTATTGTCAATCGCATCATATGCTGCCGTTTCTTATTTCATATCG
GCCATGGTCCCCCTTTTCCTTGAAGCTGGAAGGTTTGGAAAGGACATTAA
CAAGCGAGGTACGCCTGCGGGTGAACAGAGAATACCTGAACCTTTAGGAC
TGGTACCCGCAACCGTTTACATCATGATCCTCTGCATATTGCACGTCTTC
GCTCATTACAACGGTGATGCACGCTTGTACACAGCCGCGATGGCGTGTGT
CACTTTTATGACCCTGCTCGGTTTTGCAGACGACGTGTTGGATCTGAGAT
GGCGATACAAACTTGTGCTTCCGCTCATAGCTAGCATGCCATTGCTCGTC
AATTATACTGGCAAAACAACCGTGATTCTACCCCGCGTTATCCGTCCGCT
GGTCGGTCGAATCGCGAGTCTGTTTGGGGGTGGTCTTGTCTACAGCGTGT
CCGGAAGATTAGTCGATCTGGGCGCGGCGTATTACGTTTACATGGCTATG
CTAAGCATTTTCTGCACTAACGCAATCAACATTTATGCAGGCATCAACGG
ACTAGAAGTGGGGCAATCAATCGTTATTGCGATTTTCGTTACCATTCACA
ACTCGCTCAACTTGTCATCCGATGTGCCGAAGGACAATTTGCAGCTTCTT
CGAGATCATCACACATTTTCATTGGATATGATGCTTCCATTTACCGCGGC
ATGTCTTGGACTGATTTCTCACAACTGGTATCCGTCCAAGGTATTCGTTG
GCGATACCTTTTGTTATTTTGCTGGAATGACGTTCGCGATGGGAAGTATT
CTGGGTCATTACTCTACTACATTGTTGCTGCTGTTTATTCCACAGATTTT
CAACTTCGTTTACTCTCTGCCTCAACTGTTCGGTATTGTACCATGTCCAA
GACATCGACTTCCAATTTTCAATAAGAGCACGGGACGCCTGGAAGGTGTA
AAGTCTCACCTCAACCTCGTTAACCTCGTACTGTTGATAACGGGCCCTCT
TCATGAGAGGACTCTTTGCATCACTTTGCTTGTACTGCAGGTTATTTGTT
GTTCTCTTGGATTGATTGTTCGAGCAGTGTTTTTACGACATTTTTCATAA
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