Ggra1473.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1473.t1
Unique NameGgra1473.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:188617..189876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4098.XP_009628811.1
PFAMsORC2
Max annot lvl35493|Streptophyta
KEGG koko:K02604
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Evalue1.38e-56
EggNOG OGsCOG5575@1|root,KOG2928@2759|Eukaryota,37J3V@33090|Viridiplantae,3G8C9@35493|Streptophyta,44D4D@71274|asterids
Descriptionorigin recognition complex
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1473Ggra1473Gracilaria gracilis GNS1m malegenetig00000844_pilon 188617..189876 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1473.t1.stop1Ggra1473.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 188617..188619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1473.t1.CDS1Ggra1473.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 188617..189876 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1473.t1.exon1Ggra1473.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 188617..189876 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1473.t1.start1Ggra1473.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 189874..189876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1473.t1Ggra1473.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 188617..189876 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1473.t1 ID=Ggra1473.t1|Name=Ggra1473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp
MPRGRRRGSAYSERGRSSTPAKPPRLRSRSVFDSKQDVRPHAEKPQKGRQ
KLGTKADVQEDDITPATQDSREDEEIGAGRSYFEAHKGVVRTSNLTLASL
SIAPQEQLETALQNFEHPLKREQNFLLDKLRKCFQQYLYILEAAHSLLFY
GFGSKKKLLDEFAQYLTKSHAVMVVNAFNPTLSLRSILAQIAKDFLNLYN
FPKRTLSDYTDAIRSGIRNHRIGIVIHNIDGPPLRSPESQNVLATLSSIP
GISIAASIDHVNAPLLWDGAMYSKFEWAWIKSDTFAPYDAETVYSSKPLL
RGGRERRVEGAVALLKSLSDRAKQVFEVLAQRQLDTEQVRSTKDSSMSRT
TFNQLFEITKERFLASDPASLRIILTELHTHDLLQSKRGADAAEQLWIPL
QKAQLEAIIAEINPAEDRE*
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spliced messenger RNA

>Ggra1473.t1 ID=Ggra1473.t1|Name=Ggra1473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000844_pilon:188617..189876- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGAGGAAGAAGAAGAGGCTCTGCATACTCTGAGCGGGGGCGTTC
ATCCACCCCAGCCAAGCCGCCCCGCCTTCGTTCTAGAAGTGTCTTCGACT
CCAAGCAAGATGTTCGCCCACACGCTGAGAAACCTCAGAAGGGACGGCAG
AAACTCGGTACGAAAGCGGACGTACAAGAAGACGATATTACCCCAGCGAC
ACAAGATTCTCGGGAAGATGAAGAAATCGGCGCCGGTCGGTCCTACTTTG
AAGCTCACAAAGGAGTGGTGCGGACTTCGAATCTCACCTTGGCCAGTTTA
TCAATAGCTCCTCAAGAGCAACTTGAGACGGCTCTTCAAAATTTTGAACA
TCCTCTGAAACGGGAACAAAACTTTCTGCTTGATAAGCTTCGGAAATGTT
TCCAACAGTATCTCTACATACTGGAAGCTGCCCATTCTCTGTTATTCTAT
GGGTTTGGATCCAAGAAAAAGCTACTAGACGAATTTGCTCAGTATCTTAC
CAAGTCTCACGCTGTCATGGTCGTCAATGCATTTAATCCAACTCTGAGTT
TGCGATCTATTCTTGCCCAGATTGCAAAAGACTTTCTAAACCTGTACAAC
TTCCCGAAGCGTACCTTGTCCGACTACACAGACGCCATTCGCTCTGGCAT
AAGAAATCATCGCATCGGAATTGTTATTCATAACATAGACGGACCTCCGC
TAAGGTCTCCCGAGAGTCAGAATGTGCTTGCGACACTCAGTTCAATACCT
GGCATATCCATCGCAGCCAGCATCGACCACGTCAATGCTCCTCTTTTGTG
GGATGGTGCAATGTACTCAAAGTTTGAATGGGCCTGGATAAAATCCGATA
CATTTGCTCCATACGACGCAGAGACAGTATACAGCTCAAAACCGCTTCTG
CGGGGAGGCAGAGAGCGGCGTGTTGAGGGCGCTGTAGCACTTCTCAAGTC
TTTGTCGGACAGAGCAAAGCAGGTATTTGAAGTGCTTGCTCAAAGGCAGC
TGGACACAGAGCAAGTTAGATCAACCAAGGACAGCTCTATGAGTCGAACA
ACTTTCAATCAACTGTTTGAAATCACCAAGGAAAGGTTCCTTGCCTCTGA
TCCGGCTTCTTTGCGGATTATACTGACAGAGTTACACACGCATGATTTGC
TTCAAAGCAAACGAGGAGCGGATGCAGCGGAACAGCTGTGGATACCGTTG
CAAAAGGCGCAGTTGGAGGCAATCATTGCCGAGATAAATCCTGCGGAAGA
CCGGGAATGA
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protein sequence of Ggra1473.t1

>Ggra1473.t1 ID=Ggra1473.t1|Name=Ggra1473.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=420bp
MPRGRRRGSAYSERGRSSTPAKPPRLRSRSVFDSKQDVRPHAEKPQKGRQ
KLGTKADVQEDDITPATQDSREDEEIGAGRSYFEAHKGVVRTSNLTLASL
SIAPQEQLETALQNFEHPLKREQNFLLDKLRKCFQQYLYILEAAHSLLFY
GFGSKKKLLDEFAQYLTKSHAVMVVNAFNPTLSLRSILAQIAKDFLNLYN
FPKRTLSDYTDAIRSGIRNHRIGIVIHNIDGPPLRSPESQNVLATLSSIP
GISIAASIDHVNAPLLWDGAMYSKFEWAWIKSDTFAPYDAETVYSSKPLL
RGGRERRVEGAVALLKSLSDRAKQVFEVLAQRQLDTEQVRSTKDSSMSRT
TFNQLFEITKERFLASDPASLRIILTELHTHDLLQSKRGADAAEQLWIPL
QKAQLEAIIAEINPAEDRE*
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mRNA from alignment at tig00000844_pilon:188617..189876-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1473.t1 ID=Ggra1473.t1|Name=Ggra1473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000844_pilon:188617..189876- (Gracilaria gracilis GNS1m male)
ATGCCCAGAGGAAGAAGAAGAGGCTCTGCATACTCTGAGCGGGGGCGTTC
ATCCACCCCAGCCAAGCCGCCCCGCCTTCGTTCTAGAAGTGTCTTCGACT
CCAAGCAAGATGTTCGCCCACACGCTGAGAAACCTCAGAAGGGACGGCAG
AAACTCGGTACGAAAGCGGACGTACAAGAAGACGATATTACCCCAGCGAC
ACAAGATTCTCGGGAAGATGAAGAAATCGGCGCCGGTCGGTCCTACTTTG
AAGCTCACAAAGGAGTGGTGCGGACTTCGAATCTCACCTTGGCCAGTTTA
TCAATAGCTCCTCAAGAGCAACTTGAGACGGCTCTTCAAAATTTTGAACA
TCCTCTGAAACGGGAACAAAACTTTCTGCTTGATAAGCTTCGGAAATGTT
TCCAACAGTATCTCTACATACTGGAAGCTGCCCATTCTCTGTTATTCTAT
GGGTTTGGATCCAAGAAAAAGCTACTAGACGAATTTGCTCAGTATCTTAC
CAAGTCTCACGCTGTCATGGTCGTCAATGCATTTAATCCAACTCTGAGTT
TGCGATCTATTCTTGCCCAGATTGCAAAAGACTTTCTAAACCTGTACAAC
TTCCCGAAGCGTACCTTGTCCGACTACACAGACGCCATTCGCTCTGGCAT
AAGAAATCATCGCATCGGAATTGTTATTCATAACATAGACGGACCTCCGC
TAAGGTCTCCCGAGAGTCAGAATGTGCTTGCGACACTCAGTTCAATACCT
GGCATATCCATCGCAGCCAGCATCGACCACGTCAATGCTCCTCTTTTGTG
GGATGGTGCAATGTACTCAAAGTTTGAATGGGCCTGGATAAAATCCGATA
CATTTGCTCCATACGACGCAGAGACAGTATACAGCTCAAAACCGCTTCTG
CGGGGAGGCAGAGAGCGGCGTGTTGAGGGCGCTGTAGCACTTCTCAAGTC
TTTGTCGGACAGAGCAAAGCAGGTATTTGAAGTGCTTGCTCAAAGGCAGC
TGGACACAGAGCAAGTTAGATCAACCAAGGACAGCTCTATGAGTCGAACA
ACTTTCAATCAACTGTTTGAAATCACCAAGGAAAGGTTCCTTGCCTCTGA
TCCGGCTTCTTTGCGGATTATACTGACAGAGTTACACACGCATGATTTGC
TTCAAAGCAAACGAGGAGCGGATGCAGCGGAACAGCTGTGGATACCGTTG
CAAAAGGCGCAGTTGGAGGCAATCATTGCCGAGATAAATCCTGCGGAAGA
CCGGGAATGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:188617..189876-

>Ggra1473.t1 ID=Ggra1473.t1|Name=Ggra1473.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00000844_pilon:188617..189876- (Gracilaria gracilis GNS1m male)
ATGCCCAGAGGAAGAAGAAGAGGCTCTGCATACTCTGAGCGGGGGCGTTC
ATCCACCCCAGCCAAGCCGCCCCGCCTTCGTTCTAGAAGTGTCTTCGACT
CCAAGCAAGATGTTCGCCCACACGCTGAGAAACCTCAGAAGGGACGGCAG
AAACTCGGTACGAAAGCGGACGTACAAGAAGACGATATTACCCCAGCGAC
ACAAGATTCTCGGGAAGATGAAGAAATCGGCGCCGGTCGGTCCTACTTTG
AAGCTCACAAAGGAGTGGTGCGGACTTCGAATCTCACCTTGGCCAGTTTA
TCAATAGCTCCTCAAGAGCAACTTGAGACGGCTCTTCAAAATTTTGAACA
TCCTCTGAAACGGGAACAAAACTTTCTGCTTGATAAGCTTCGGAAATGTT
TCCAACAGTATCTCTACATACTGGAAGCTGCCCATTCTCTGTTATTCTAT
GGGTTTGGATCCAAGAAAAAGCTACTAGACGAATTTGCTCAGTATCTTAC
CAAGTCTCACGCTGTCATGGTCGTCAATGCATTTAATCCAACTCTGAGTT
TGCGATCTATTCTTGCCCAGATTGCAAAAGACTTTCTAAACCTGTACAAC
TTCCCGAAGCGTACCTTGTCCGACTACACAGACGCCATTCGCTCTGGCAT
AAGAAATCATCGCATCGGAATTGTTATTCATAACATAGACGGACCTCCGC
TAAGGTCTCCCGAGAGTCAGAATGTGCTTGCGACACTCAGTTCAATACCT
GGCATATCCATCGCAGCCAGCATCGACCACGTCAATGCTCCTCTTTTGTG
GGATGGTGCAATGTACTCAAAGTTTGAATGGGCCTGGATAAAATCCGATA
CATTTGCTCCATACGACGCAGAGACAGTATACAGCTCAAAACCGCTTCTG
CGGGGAGGCAGAGAGCGGCGTGTTGAGGGCGCTGTAGCACTTCTCAAGTC
TTTGTCGGACAGAGCAAAGCAGGTATTTGAAGTGCTTGCTCAAAGGCAGC
TGGACACAGAGCAAGTTAGATCAACCAAGGACAGCTCTATGAGTCGAACA
ACTTTCAATCAACTGTTTGAAATCACCAAGGAAAGGTTCCTTGCCTCTGA
TCCGGCTTCTTTGCGGATTATACTGACAGAGTTACACACGCATGATTTGC
TTCAAAGCAAACGAGGAGCGGATGCAGCGGAACAGCTGTGGATACCGTTG
CAAAAGGCGCAGTTGGAGGCAATCATTGCCGAGATAAATCCTGCGGAAGA
CCGGGAATGA
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