Ggra1472.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1472.t1
Unique Name	Ggra1472.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	347

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:187142..188182 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706778.1
PFAMs	Mpv17_PMP22
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13347,ko:K13348
KEGG Pathway	ko04146,map04146
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0016020,GO:0016021,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Evalue	3.55e-42
EggNOG OGs	KOG1944@1\|root,KOG1944@2759\|Eukaryota
Description	Belongs to the peroxisomal membrane protein PXMP2 4 family
COG category	C
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1472	Ggra1472	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 187142..188182 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1472.t1.start1	Ggra1472.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 187142..187144 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1472.t1.CDS1	Ggra1472.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 187142..188182 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1472.t1.exon1	Ggra1472.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 187142..188182 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1472.t1.stop1	Ggra1472.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 188180..188182 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1472.t1	Ggra1472.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 187142..188182 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:187142..188182+
coding sequence from alignment at tig00000844_pilon:187142..188182+

mRNA sequence

>Ggra1472.t1 ID=Ggra1472.t1|Name=Ggra1472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=347bp
MNCILASRFSRVSVAFCTAPTGTARHVSLELRTVLNQTSLSFRSERKFVR
KTCLPHGLGRVNQLGVHAGRLSQAPLHTFSTSRTPSKQPICAFDKVPKAL
PDWWDDEEEEDTTDEFHALHFENANPQVALGSGSGSLASNGGSGGSGRGD
DEKFNGDGGKPNDGLLAALMAMYLRAMSRNPILTKAITTSVMAFLGDVLA
QSLSQIGTNGFEWDMRRTLSISVWGLCFMGPTLHYWFSTLDRLFTQKYSV
ICKLITDQLLFAPFFNTAFMMGVGTLEGHSFEEVSNNVRTKLWSAMKANW
MLWPAAQFINFSFVPKNLQVVYVNCVALVWNMIFMYISHSKNEAIA*

spliced messenger RNA

>Ggra1472.t1 ID=Ggra1472.t1|Name=Ggra1472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000844_pilon:187142..188182+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTGCATTCTGGCCTCGCGCTTTTCGCGTGTTTCCGTCGCTTTCTG
CACTGCTCCTACTGGCACAGCTCGCCATGTCTCTCTGGAATTGAGAACCG
TCTTAAACCAGACAAGCTTGTCGTTCAGAAGTGAGCGCAAATTCGTGCGA
AAAACTTGTTTACCTCACGGTCTTGGCCGTGTGAATCAACTTGGCGTTCA
CGCTGGGCGATTATCACAAGCTCCGTTGCATACGTTTTCAACCTCACGAA
CGCCCTCCAAACAACCTATATGTGCGTTTGACAAAGTGCCTAAAGCACTG
CCTGATTGGTGGGATGACGAAGAGGAAGAAGATACCACCGATGAGTTTCA
CGCCTTACACTTCGAGAACGCCAATCCTCAGGTTGCCTTAGGTTCAGGCA
GCGGCTCTTTAGCGAGCAATGGAGGCAGTGGTGGAAGTGGACGAGGTGAT
GACGAAAAGTTCAACGGTGATGGAGGTAAACCGAATGATGGGCTTTTGGC
TGCGTTGATGGCCATGTACCTGCGTGCCATGTCGCGAAATCCGATACTCA
CAAAAGCTATTACAACGTCCGTTATGGCTTTTTTGGGTGACGTTTTGGCA
CAGAGTCTTTCTCAGATTGGCACCAACGGGTTTGAGTGGGACATGAGGAG
AACTCTTTCAATTTCCGTTTGGGGACTCTGCTTCATGGGTCCTACTCTTC
ATTACTGGTTTTCTACTCTTGACCGACTGTTTACGCAAAAGTATTCCGTT
ATCTGCAAGCTTATTACCGATCAACTGCTCTTTGCCCCTTTCTTCAACAC
AGCGTTCATGATGGGCGTTGGTACATTAGAAGGACACTCTTTTGAAGAAG
TCTCCAACAACGTGAGGACCAAGTTGTGGTCTGCCATGAAAGCAAACTGG
ATGTTATGGCCCGCTGCGCAATTCATTAACTTTTCATTTGTTCCAAAGAA
CCTGCAGGTTGTGTACGTTAACTGTGTCGCACTCGTGTGGAACATGATCT
TTATGTATATATCACATTCAAAGAACGAAGCTATCGCTTAA

protein sequence of Ggra1472.t1

>Ggra1472.t1 ID=Ggra1472.t1|Name=Ggra1472.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=347bp
MNCILASRFSRVSVAFCTAPTGTARHVSLELRTVLNQTSLSFRSERKFVR
KTCLPHGLGRVNQLGVHAGRLSQAPLHTFSTSRTPSKQPICAFDKVPKAL
PDWWDDEEEEDTTDEFHALHFENANPQVALGSGSGSLASNGGSGGSGRGD
DEKFNGDGGKPNDGLLAALMAMYLRAMSRNPILTKAITTSVMAFLGDVLA
QSLSQIGTNGFEWDMRRTLSISVWGLCFMGPTLHYWFSTLDRLFTQKYSV
ICKLITDQLLFAPFFNTAFMMGVGTLEGHSFEEVSNNVRTKLWSAMKANW
MLWPAAQFINFSFVPKNLQVVYVNCVALVWNMIFMYISHSKNEAIA*

mRNA from alignment at tig00000844_pilon:187142..188182+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1472.t1 ID=Ggra1472.t1|Name=Ggra1472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000844_pilon:187142..188182+ (Gracilaria gracilis GNS1m male)
ATGAACTGCATTCTGGCCTCGCGCTTTTCGCGTGTTTCCGTCGCTTTCTG
CACTGCTCCTACTGGCACAGCTCGCCATGTCTCTCTGGAATTGAGAACCG
TCTTAAACCAGACAAGCTTGTCGTTCAGAAGTGAGCGCAAATTCGTGCGA
AAAACTTGTTTACCTCACGGTCTTGGCCGTGTGAATCAACTTGGCGTTCA
CGCTGGGCGATTATCACAAGCTCCGTTGCATACGTTTTCAACCTCACGAA
CGCCCTCCAAACAACCTATATGTGCGTTTGACAAAGTGCCTAAAGCACTG
CCTGATTGGTGGGATGACGAAGAGGAAGAAGATACCACCGATGAGTTTCA
CGCCTTACACTTCGAGAACGCCAATCCTCAGGTTGCCTTAGGTTCAGGCA
GCGGCTCTTTAGCGAGCAATGGAGGCAGTGGTGGAAGTGGACGAGGTGAT
GACGAAAAGTTCAACGGTGATGGAGGTAAACCGAATGATGGGCTTTTGGC
TGCGTTGATGGCCATGTACCTGCGTGCCATGTCGCGAAATCCGATACTCA
CAAAAGCTATTACAACGTCCGTTATGGCTTTTTTGGGTGACGTTTTGGCA
CAGAGTCTTTCTCAGATTGGCACCAACGGGTTTGAGTGGGACATGAGGAG
AACTCTTTCAATTTCCGTTTGGGGACTCTGCTTCATGGGTCCTACTCTTC
ATTACTGGTTTTCTACTCTTGACCGACTGTTTACGCAAAAGTATTCCGTT
ATCTGCAAGCTTATTACCGATCAACTGCTCTTTGCCCCTTTCTTCAACAC
AGCGTTCATGATGGGCGTTGGTACATTAGAAGGACACTCTTTTGAAGAAG
TCTCCAACAACGTGAGGACCAAGTTGTGGTCTGCCATGAAAGCAAACTGG
ATGTTATGGCCCGCTGCGCAATTCATTAACTTTTCATTTGTTCCAAAGAA
CCTGCAGGTTGTGTACGTTAACTGTGTCGCACTCGTGTGGAACATGATCT
TTATGTATATATCACATTCAAAGAACGAAGCTATCGCTTAA

Coding sequence (CDS) from alignment at tig00000844_pilon:187142..188182+

>Ggra1472.t1 ID=Ggra1472.t1|Name=Ggra1472.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00000844_pilon:187142..188182+ (Gracilaria gracilis GNS1m male)
ATGAACTGCATTCTGGCCTCGCGCTTTTCGCGTGTTTCCGTCGCTTTCTG
CACTGCTCCTACTGGCACAGCTCGCCATGTCTCTCTGGAATTGAGAACCG
TCTTAAACCAGACAAGCTTGTCGTTCAGAAGTGAGCGCAAATTCGTGCGA
AAAACTTGTTTACCTCACGGTCTTGGCCGTGTGAATCAACTTGGCGTTCA
CGCTGGGCGATTATCACAAGCTCCGTTGCATACGTTTTCAACCTCACGAA
CGCCCTCCAAACAACCTATATGTGCGTTTGACAAAGTGCCTAAAGCACTG
CCTGATTGGTGGGATGACGAAGAGGAAGAAGATACCACCGATGAGTTTCA
CGCCTTACACTTCGAGAACGCCAATCCTCAGGTTGCCTTAGGTTCAGGCA
GCGGCTCTTTAGCGAGCAATGGAGGCAGTGGTGGAAGTGGACGAGGTGAT
GACGAAAAGTTCAACGGTGATGGAGGTAAACCGAATGATGGGCTTTTGGC
TGCGTTGATGGCCATGTACCTGCGTGCCATGTCGCGAAATCCGATACTCA
CAAAAGCTATTACAACGTCCGTTATGGCTTTTTTGGGTGACGTTTTGGCA
CAGAGTCTTTCTCAGATTGGCACCAACGGGTTTGAGTGGGACATGAGGAG
AACTCTTTCAATTTCCGTTTGGGGACTCTGCTTCATGGGTCCTACTCTTC
ATTACTGGTTTTCTACTCTTGACCGACTGTTTACGCAAAAGTATTCCGTT
ATCTGCAAGCTTATTACCGATCAACTGCTCTTTGCCCCTTTCTTCAACAC
AGCGTTCATGATGGGCGTTGGTACATTAGAAGGACACTCTTTTGAAGAAG
TCTCCAACAACGTGAGGACCAAGTTGTGGTCTGCCATGAAAGCAAACTGG
ATGTTATGGCCCGCTGCGCAATTCATTAACTTTTCATTTGTTCCAAAGAA
CCTGCAGGTTGTGTACGTTAACTGTGTCGCACTCGTGTGGAACATGATCT
TTATGTATATATCACATTCAAAGAACGAAGCTATCGCTTAA