Ggra1471.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1471.t1
Unique NameGgra1471.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:184056..184787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog120017.I2G3S1
PFAMsMMtag
Max annot lvl4751|Fungi
Evalue0.000277
EggNOG OGsKOG4520@1|root,KOG4520@2759|Eukaryota,38HYJ@33154|Opisthokonta,3P7S1@4751|Fungi,3VC1V@5204|Basidiomycota,3N3FJ@452284|Ustilaginomycotina
DescriptionKinase phosphorylation protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1471Ggra1471Gracilaria gracilis GNS1m malegenetig00000844_pilon 184056..184787 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1471.t1.start1Ggra1471.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 184056..184058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1471.t1.CDS1Ggra1471.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 184056..184787 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1471.t1.exon1Ggra1471.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 184056..184787 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1471.t1.stop1Ggra1471.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 184785..184787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1471.t1Ggra1471.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 184056..184787 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1471.t1 ID=Ggra1471.t1|Name=Ggra1471.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=244bp
MDFVGDLIGAESRRHGTRGGRADFTWDSVRDNEKSYYLGNSLAKPSTSQR
NASNREPDWYSKPPTTSHPAAASLAPSRPSLEQVQNSIDDLQLVREREKS
IMERVLLGRSFSEAVRSALNEGDASGIDDDSNPQAVEARRAARKRRKIEK
AERKEQRRQQRQERRLRREQQHRRQNARQDTQTSRRYSSDSEVEGHRSRQ
NDTTRRRRRRERGSTGRRKRHEYSSSTESDSSRRASRRQRLRY*
back to top

spliced messenger RNA

>Ggra1471.t1 ID=Ggra1471.t1|Name=Ggra1471.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00000844_pilon:184056..184787+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTCGTTGGCGACCTCATTGGAGCAGAGTCGCGAAGGCACGGCAC
CCGTGGGGGGAGAGCTGACTTCACATGGGATTCCGTCCGAGACAATGAGA
AGTCTTACTACCTCGGAAACTCATTGGCAAAACCAAGTACATCACAAAGA
AATGCCTCCAACCGCGAGCCTGACTGGTACAGTAAGCCTCCCACAACCTC
CCACCCAGCTGCTGCATCTTTGGCTCCATCTCGTCCCTCACTGGAGCAGG
TGCAAAACTCAATAGATGACCTCCAGCTCGTCCGTGAGAGGGAAAAGTCC
ATCATGGAGCGCGTTCTCCTCGGTCGTTCGTTTTCGGAGGCTGTGCGCTC
TGCTTTAAATGAAGGTGATGCGAGTGGAATCGATGACGACAGTAATCCGC
AAGCTGTAGAAGCGCGTCGCGCAGCACGCAAACGTAGGAAGATCGAGAAG
GCTGAGCGGAAGGAACAGCGACGGCAACAGAGACAAGAGAGACGTTTGAG
ACGAGAGCAACAACACCGCCGTCAGAATGCCCGCCAGGACACTCAAACAT
CGAGGCGATACAGTTCAGATTCCGAAGTAGAGGGTCATAGAAGTCGTCAG
AATGATACTACCCGCAGAAGGCGAAGGCGAGAGCGAGGAAGCACCGGTCG
TCGGAAGAGACATGAATATAGCAGCTCCACCGAATCTGACTCTAGTCGAC
GCGCTTCTCGGCGGCAACGGCTGCGATATTAG
back to top

protein sequence of Ggra1471.t1

>Ggra1471.t1 ID=Ggra1471.t1|Name=Ggra1471.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=244bp
MDFVGDLIGAESRRHGTRGGRADFTWDSVRDNEKSYYLGNSLAKPSTSQR
NASNREPDWYSKPPTTSHPAAASLAPSRPSLEQVQNSIDDLQLVREREKS
IMERVLLGRSFSEAVRSALNEGDASGIDDDSNPQAVEARRAARKRRKIEK
AERKEQRRQQRQERRLRREQQHRRQNARQDTQTSRRYSSDSEVEGHRSRQ
NDTTRRRRRRERGSTGRRKRHEYSSSTESDSSRRASRRQRLRY*
back to top

mRNA from alignment at tig00000844_pilon:184056..184787+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1471.t1 ID=Ggra1471.t1|Name=Ggra1471.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00000844_pilon:184056..184787+ (Gracilaria gracilis GNS1m male)
ATGGATTTCGTTGGCGACCTCATTGGAGCAGAGTCGCGAAGGCACGGCAC
CCGTGGGGGGAGAGCTGACTTCACATGGGATTCCGTCCGAGACAATGAGA
AGTCTTACTACCTCGGAAACTCATTGGCAAAACCAAGTACATCACAAAGA
AATGCCTCCAACCGCGAGCCTGACTGGTACAGTAAGCCTCCCACAACCTC
CCACCCAGCTGCTGCATCTTTGGCTCCATCTCGTCCCTCACTGGAGCAGG
TGCAAAACTCAATAGATGACCTCCAGCTCGTCCGTGAGAGGGAAAAGTCC
ATCATGGAGCGCGTTCTCCTCGGTCGTTCGTTTTCGGAGGCTGTGCGCTC
TGCTTTAAATGAAGGTGATGCGAGTGGAATCGATGACGACAGTAATCCGC
AAGCTGTAGAAGCGCGTCGCGCAGCACGCAAACGTAGGAAGATCGAGAAG
GCTGAGCGGAAGGAACAGCGACGGCAACAGAGACAAGAGAGACGTTTGAG
ACGAGAGCAACAACACCGCCGTCAGAATGCCCGCCAGGACACTCAAACAT
CGAGGCGATACAGTTCAGATTCCGAAGTAGAGGGTCATAGAAGTCGTCAG
AATGATACTACCCGCAGAAGGCGAAGGCGAGAGCGAGGAAGCACCGGTCG
TCGGAAGAGACATGAATATAGCAGCTCCACCGAATCTGACTCTAGTCGAC
GCGCTTCTCGGCGGCAACGGCTGCGATATTAG
back to top

Coding sequence (CDS) from alignment at tig00000844_pilon:184056..184787+

>Ggra1471.t1 ID=Ggra1471.t1|Name=Ggra1471.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=732bp|location=Sequence derived from alignment at tig00000844_pilon:184056..184787+ (Gracilaria gracilis GNS1m male)
ATGGATTTCGTTGGCGACCTCATTGGAGCAGAGTCGCGAAGGCACGGCAC
CCGTGGGGGGAGAGCTGACTTCACATGGGATTCCGTCCGAGACAATGAGA
AGTCTTACTACCTCGGAAACTCATTGGCAAAACCAAGTACATCACAAAGA
AATGCCTCCAACCGCGAGCCTGACTGGTACAGTAAGCCTCCCACAACCTC
CCACCCAGCTGCTGCATCTTTGGCTCCATCTCGTCCCTCACTGGAGCAGG
TGCAAAACTCAATAGATGACCTCCAGCTCGTCCGTGAGAGGGAAAAGTCC
ATCATGGAGCGCGTTCTCCTCGGTCGTTCGTTTTCGGAGGCTGTGCGCTC
TGCTTTAAATGAAGGTGATGCGAGTGGAATCGATGACGACAGTAATCCGC
AAGCTGTAGAAGCGCGTCGCGCAGCACGCAAACGTAGGAAGATCGAGAAG
GCTGAGCGGAAGGAACAGCGACGGCAACAGAGACAAGAGAGACGTTTGAG
ACGAGAGCAACAACACCGCCGTCAGAATGCCCGCCAGGACACTCAAACAT
CGAGGCGATACAGTTCAGATTCCGAAGTAGAGGGTCATAGAAGTCGTCAG
AATGATACTACCCGCAGAAGGCGAAGGCGAGAGCGAGGAAGCACCGGTCG
TCGGAAGAGACATGAATATAGCAGCTCCACCGAATCTGACTCTAGTCGAC
GCGCTTCTCGGCGGCAACGGCTGCGATATTAG
back to top