Ggra1470.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1470.t1
Unique NameGgra1470.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length433
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:181317..182708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708330.1
PFAMsDUF647
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009941,GO:0010224,GO:0031967,GO:0031975,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896
Evalue3.02e-115
EggNOG OGsKOG4249@1|root,KOG4249@2759|Eukaryota
Descriptionresponse to UV-B
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1470Ggra1470Gracilaria gracilis GNS1m malegenetig00000844_pilon 181317..182708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1470.t1Ggra1470.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 181317..182708 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1470.t1.stop1Ggra1470.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 181317..181319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1470.t1.CDS1Ggra1470.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 181317..182316 -
Ggra1470.t1.CDS2Ggra1470.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 182410..182708 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1470.t1.exon1Ggra1470.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 181317..182316 -
Ggra1470.t1.exon2Ggra1470.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 182410..182708 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1470.t1.intron1Ggra1470.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 182317..182409 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1470.t1.start1Ggra1470.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 182706..182708 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1470.t1 ID=Ggra1470.t1|Name=Ggra1470.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=433bp
MLNASVAVPAIGSSVPLLFEKNGGAVTTFYDIDEKKDRGIRRLTPQKEID
DRPLLDKFIAWLTKIYLPSGFPHTTTPDYISFTKYRTLQNLASAIMSVIS
TEALLFGLGLGKTVAAGAAATSWVLKDGASYIAKILYGSVFGSKFDDDPK
SWRIAADIVEDVGGAIEILTPLFPLTYFLPLASLAVCLKGMSLMTGTATR
HVVYRSLAASGMQNTGDIATKGESQGVTMKMLGLGLGIVISSRIGQKYYV
LLGAYGLLAIVHIAANWRSVQCVQFSFFNKQRASILIDSHLDRSKMPTPR
DVSSIERIILPPWRGYQSSVKLGAGVAESVTTPADLAEAKKLFKKERFMI
FATDGGDTIKVLLKDTAKPTDVLRAYYTAKQLKRIKSNSKQALTESLKHM
QKNIDSFMKETATAGWDTRHMLLADDTVRIAW*
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spliced messenger RNA

>Ggra1470.t1 ID=Ggra1470.t1|Name=Ggra1470.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000844_pilon:181317..182708- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAATGCTTCCGTCGCTGTGCCGGCGATAGGGTCCTCCGTTCCACT
ACTCTTTGAGAAGAATGGTGGGGCTGTCACAACGTTTTATGATATTGATG
AGAAAAAAGACCGGGGAATACGGCGTTTGACACCACAGAAAGAGATTGAT
GACAGACCATTGTTGGATAAGTTTATTGCATGGCTGACGAAAATTTATCT
TCCAAGCGGTTTTCCCCATACCACAACACCGGACTACATATCTTTCACGA
AGTACCGTACCCTACAAAATCTAGCTTCGGCCATTATGTCAGTCATCAGT
ACGGAGGCATTGTTGTTCGGTCTAGGACTTGGAAAAACGGTTGCAGCTGG
TGCTGCTGCAACGAGCTGGGTACTAAAGGATGGTGCTTCATACATTGCGA
AGATTTTGTACGGAAGTGTCTTCGGGTCAAAGTTTGACGACGACCCTAAG
AGTTGGAGAATTGCTGCTGATATTGTCGAAGATGTTGGCGGCGCCATAGA
AATTTTGACACCCTTGTTTCCTCTTACCTACTTTTTACCTCTGGCGTCTC
TAGCAGTTTGTCTCAAAGGCATGTCATTGATGACGGGAACGGCCACCCGC
CATGTGGTATATCGCTCTCTTGCTGCGAGTGGGATGCAGAATACTGGGGA
TATTGCTACGAAAGGAGAATCGCAGGGAGTTACAATGAAAATGCTTGGTC
TTGGTTTAGGAATTGTTATTTCGTCAAGAATTGGTCAAAAGTACTATGTT
CTACTTGGGGCGTATGGTCTACTTGCGATTGTTCATATTGCCGCGAACTG
GAGATCGGTCCAGTGTGTGCAATTTTCTTTCTTCAACAAGCAAAGAGCAT
CTATTCTGATCGACAGTCACCTGGATCGTTCCAAGATGCCCACTCCGCGA
GATGTTTCTTCCATCGAGCGGATTATTTTGCCGCCTTGGAGGGGCTATCA
GTCGTCTGTCAAGCTGGGTGCAGGTGTGGCTGAATCTGTAACCACACCTG
CGGACCTAGCAGAAGCAAAAAAACTGTTCAAGAAAGAGCGCTTTATGATC
TTTGCTACTGATGGCGGAGACACTATAAAAGTACTGCTGAAGGACACTGC
GAAACCTACTGATGTTCTGCGGGCTTATTACACCGCAAAACAGTTGAAGA
GGATAAAGAGTAATTCAAAGCAAGCTCTAACAGAGTCACTGAAGCATATG
CAGAAGAACATAGACTCGTTCATGAAGGAAACAGCTACAGCGGGTTGGGA
TACTCGGCACATGCTGCTAGCAGATGACACGGTTAGAATAGCATGGTAA
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protein sequence of Ggra1470.t1

>Ggra1470.t1 ID=Ggra1470.t1|Name=Ggra1470.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=433bp
MLNASVAVPAIGSSVPLLFEKNGGAVTTFYDIDEKKDRGIRRLTPQKEID
DRPLLDKFIAWLTKIYLPSGFPHTTTPDYISFTKYRTLQNLASAIMSVIS
TEALLFGLGLGKTVAAGAAATSWVLKDGASYIAKILYGSVFGSKFDDDPK
SWRIAADIVEDVGGAIEILTPLFPLTYFLPLASLAVCLKGMSLMTGTATR
HVVYRSLAASGMQNTGDIATKGESQGVTMKMLGLGLGIVISSRIGQKYYV
LLGAYGLLAIVHIAANWRSVQCVQFSFFNKQRASILIDSHLDRSKMPTPR
DVSSIERIILPPWRGYQSSVKLGAGVAESVTTPADLAEAKKLFKKERFMI
FATDGGDTIKVLLKDTAKPTDVLRAYYTAKQLKRIKSNSKQALTESLKHM
QKNIDSFMKETATAGWDTRHMLLADDTVRIAW*
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mRNA from alignment at tig00000844_pilon:181317..182708-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1470.t1 ID=Ggra1470.t1|Name=Ggra1470.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000844_pilon:181317..182708- (Gracilaria gracilis GNS1m male)
ATGTTGAATGCTTCCGTCGCTGTGCCGGCGATAGGGTCCTCCGTTCCACT
ACTCTTTGAGAAGAATGGTGGGGCTGTCACAACGTTTTATGATATTGATG
AGAAAAAAGACCGGGGAATACGGCGTTTGACACCACAGAAAGAGATTGAT
GACAGACCATTGTTGGATAAGTTTATTGCATGGCTGACGAAAATTTATCT
TCCAAGCGGTTTTCCCCATACCACAACACCGGACTACATATCTTTCACGA
AGTACCGTACCCTACAAAATCTAGCTTCGGCCATTATGTCAGTCATCAGG
TAAGGCCTTGTTCAGGATTTCTTCTTCGCTGAATAAGGTTCAATATATTC
TTGCTAACAGGAACATTCTTGATTTTCTCGTTAATTCCCAAGTACGGAGG
CATTGTTGTTCGGTCTAGGACTTGGAAAAACGGTTGCAGCTGGTGCTGCT
GCAACGAGCTGGGTACTAAAGGATGGTGCTTCATACATTGCGAAGATTTT
GTACGGAAGTGTCTTCGGGTCAAAGTTTGACGACGACCCTAAGAGTTGGA
GAATTGCTGCTGATATTGTCGAAGATGTTGGCGGCGCCATAGAAATTTTG
ACACCCTTGTTTCCTCTTACCTACTTTTTACCTCTGGCGTCTCTAGCAGT
TTGTCTCAAAGGCATGTCATTGATGACGGGAACGGCCACCCGCCATGTGG
TATATCGCTCTCTTGCTGCGAGTGGGATGCAGAATACTGGGGATATTGCT
ACGAAAGGAGAATCGCAGGGAGTTACAATGAAAATGCTTGGTCTTGGTTT
AGGAATTGTTATTTCGTCAAGAATTGGTCAAAAGTACTATGTTCTACTTG
GGGCGTATGGTCTACTTGCGATTGTTCATATTGCCGCGAACTGGAGATCG
GTCCAGTGTGTGCAATTTTCTTTCTTCAACAAGCAAAGAGCATCTATTCT
GATCGACAGTCACCTGGATCGTTCCAAGATGCCCACTCCGCGAGATGTTT
CTTCCATCGAGCGGATTATTTTGCCGCCTTGGAGGGGCTATCAGTCGTCT
GTCAAGCTGGGTGCAGGTGTGGCTGAATCTGTAACCACACCTGCGGACCT
AGCAGAAGCAAAAAAACTGTTCAAGAAAGAGCGCTTTATGATCTTTGCTA
CTGATGGCGGAGACACTATAAAAGTACTGCTGAAGGACACTGCGAAACCT
ACTGATGTTCTGCGGGCTTATTACACCGCAAAACAGTTGAAGAGGATAAA
GAGTAATTCAAAGCAAGCTCTAACAGAGTCACTGAAGCATATGCAGAAGA
ACATAGACTCGTTCATGAAGGAAACAGCTACAGCGGGTTGGGATACTCGG
CACATGCTGCTAGCAGATGACACGGTTAGAATAGCATGGTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:181317..182708-

>Ggra1470.t1 ID=Ggra1470.t1|Name=Ggra1470.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1299bp|location=Sequence derived from alignment at tig00000844_pilon:181317..182708- (Gracilaria gracilis GNS1m male)
ATGTTGAATGCTTCCGTCGCTGTGCCGGCGATAGGGTCCTCCGTTCCACT
ACTCTTTGAGAAGAATGGTGGGGCTGTCACAACGTTTTATGATATTGATG
AGAAAAAAGACCGGGGAATACGGCGTTTGACACCACAGAAAGAGATTGAT
GACAGACCATTGTTGGATAAGTTTATTGCATGGCTGACGAAAATTTATCT
TCCAAGCGGTTTTCCCCATACCACAACACCGGACTACATATCTTTCACGA
AGTACCGTACCCTACAAAATCTAGCTTCGGCCATTATGTCAGTCATCAGT
ACGGAGGCATTGTTGTTCGGTCTAGGACTTGGAAAAACGGTTGCAGCTGG
TGCTGCTGCAACGAGCTGGGTACTAAAGGATGGTGCTTCATACATTGCGA
AGATTTTGTACGGAAGTGTCTTCGGGTCAAAGTTTGACGACGACCCTAAG
AGTTGGAGAATTGCTGCTGATATTGTCGAAGATGTTGGCGGCGCCATAGA
AATTTTGACACCCTTGTTTCCTCTTACCTACTTTTTACCTCTGGCGTCTC
TAGCAGTTTGTCTCAAAGGCATGTCATTGATGACGGGAACGGCCACCCGC
CATGTGGTATATCGCTCTCTTGCTGCGAGTGGGATGCAGAATACTGGGGA
TATTGCTACGAAAGGAGAATCGCAGGGAGTTACAATGAAAATGCTTGGTC
TTGGTTTAGGAATTGTTATTTCGTCAAGAATTGGTCAAAAGTACTATGTT
CTACTTGGGGCGTATGGTCTACTTGCGATTGTTCATATTGCCGCGAACTG
GAGATCGGTCCAGTGTGTGCAATTTTCTTTCTTCAACAAGCAAAGAGCAT
CTATTCTGATCGACAGTCACCTGGATCGTTCCAAGATGCCCACTCCGCGA
GATGTTTCTTCCATCGAGCGGATTATTTTGCCGCCTTGGAGGGGCTATCA
GTCGTCTGTCAAGCTGGGTGCAGGTGTGGCTGAATCTGTAACCACACCTG
CGGACCTAGCAGAAGCAAAAAAACTGTTCAAGAAAGAGCGCTTTATGATC
TTTGCTACTGATGGCGGAGACACTATAAAAGTACTGCTGAAGGACACTGC
GAAACCTACTGATGTTCTGCGGGCTTATTACACCGCAAAACAGTTGAAGA
GGATAAAGAGTAATTCAAAGCAAGCTCTAACAGAGTCACTGAAGCATATG
CAGAAGAACATAGACTCGTTCATGAAGGAAACAGCTACAGCGGGTTGGGA
TACTCGGCACATGCTGCTAGCAGATGACACGGTTAGAATAGCATGGTAA
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