Ggra1466.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1466.t1
Unique NameGgra1466.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:162262..162989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S6_67V6.1
PFAMsAAA_33,Ten1_2
Max annot lvl35493|Streptophyta
Evalue3.6e-14
EggNOG OGs2CXRH@1|root,2RZ8W@2759|Eukaryota,37UC9@33090|Viridiplantae,3GHXE@35493|Streptophyta
DescriptionAAA domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1466Ggra1466Gracilaria gracilis GNS1m malegenetig00000844_pilon 162262..162989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1466.t1Ggra1466.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 162262..162989 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1466.t1.stop1Ggra1466.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 162262..162264 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1466.t1.CDS1Ggra1466.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 162262..162846 -
Ggra1466.t1.CDS2Ggra1466.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 162942..162989 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1466.t1.exon1Ggra1466.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 162262..162846 -
Ggra1466.t1.exon2Ggra1466.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 162942..162989 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1466.t1.intron1Ggra1466.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 162847..162941 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1466.t1.start1Ggra1466.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 162987..162989 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1466.t1 ID=Ggra1466.t1|Name=Ggra1466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=211bp
MNKVAAQRQVVVLIRGYPGVGKTTVAFALAKELGYCLVCKDDVREAAVRH
DANVMAEIRAVCPEHANSVVVDSNDMTYEAMFAVGLTQLKVGASGVVLES
PLGRVALGERALEITRQARALCVLVDCYAERSVWEERLAKRASKREYRPS
SVDQIMNHYSNIEYPMECDAHVSADCARPPAENVRKIALVIKQLVADEQD
VEHLSSSSSR*
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spliced messenger RNA

>Ggra1466.t1 ID=Ggra1466.t1|Name=Ggra1466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000844_pilon:162262..162989- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAAGTTGCCGCCCAGCGTCAGGTTGTTGTCCTTATCAGAGGCTA
TCCCGGCGTTGGCAAAACAACCGTTGCTTTCGCGCTAGCCAAGGAGCTTG
GCTATTGCCTCGTCTGTAAGGATGATGTCCGCGAGGCTGCCGTCCGCCAC
GATGCCAACGTGATGGCCGAGATTCGAGCCGTGTGTCCTGAGCACGCCAA
CTCGGTAGTTGTCGATTCCAACGACATGACCTACGAGGCCATGTTTGCTG
TGGGTTTGACTCAGCTAAAGGTCGGCGCCTCCGGCGTTGTGTTGGAAAGT
CCCCTAGGCCGTGTTGCACTTGGAGAGCGCGCGTTGGAGATTACGAGGCA
GGCCAGAGCTCTCTGTGTACTGGTGGACTGCTACGCTGAGAGATCGGTTT
GGGAGGAGAGATTAGCAAAACGCGCCTCAAAACGCGAGTACCGTCCTAGT
AGCGTGGATCAGATTATGAATCACTACTCTAATATCGAGTATCCGATGGA
GTGTGATGCGCACGTAAGTGCCGACTGCGCAAGACCACCGGCAGAGAACG
TGAGGAAAATTGCGCTTGTTATCAAACAGCTAGTTGCAGATGAGCAAGAT
GTGGAACATTTGAGTTCCAGCAGCTCCAGATAG
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protein sequence of Ggra1466.t1

>Ggra1466.t1 ID=Ggra1466.t1|Name=Ggra1466.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MNKVAAQRQVVVLIRGYPGVGKTTVAFALAKELGYCLVCKDDVREAAVRH
DANVMAEIRAVCPEHANSVVVDSNDMTYEAMFAVGLTQLKVGASGVVLES
PLGRVALGERALEITRQARALCVLVDCYAERSVWEERLAKRASKREYRPS
SVDQIMNHYSNIEYPMECDAHVSADCARPPAENVRKIALVIKQLVADEQD
VEHLSSSSSR*
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mRNA from alignment at tig00000844_pilon:162262..162989-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1466.t1 ID=Ggra1466.t1|Name=Ggra1466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=728bp|location=Sequence derived from alignment at tig00000844_pilon:162262..162989- (Gracilaria gracilis GNS1m male)
ATGAACAAAGTTGCCGCCCAGCGTCAGGTTGTTGTCCTTATCAGAGGCGT
AAGTTCTTCCCGAGTGTGCTTTTCGACTACAGGGTACTAGCCACTCCAGG
CGTTCCACTCCAGCGCGTCTAACAAGTTTACCGATTTTTCAAGTATCCCG
GCGTTGGCAAAACAACCGTTGCTTTCGCGCTAGCCAAGGAGCTTGGCTAT
TGCCTCGTCTGTAAGGATGATGTCCGCGAGGCTGCCGTCCGCCACGATGC
CAACGTGATGGCCGAGATTCGAGCCGTGTGTCCTGAGCACGCCAACTCGG
TAGTTGTCGATTCCAACGACATGACCTACGAGGCCATGTTTGCTGTGGGT
TTGACTCAGCTAAAGGTCGGCGCCTCCGGCGTTGTGTTGGAAAGTCCCCT
AGGCCGTGTTGCACTTGGAGAGCGCGCGTTGGAGATTACGAGGCAGGCCA
GAGCTCTCTGTGTACTGGTGGACTGCTACGCTGAGAGATCGGTTTGGGAG
GAGAGATTAGCAAAACGCGCCTCAAAACGCGAGTACCGTCCTAGTAGCGT
GGATCAGATTATGAATCACTACTCTAATATCGAGTATCCGATGGAGTGTG
ATGCGCACGTAAGTGCCGACTGCGCAAGACCACCGGCAGAGAACGTGAGG
AAAATTGCGCTTGTTATCAAACAGCTAGTTGCAGATGAGCAAGATGTGGA
ACATTTGAGTTCCAGCAGCTCCAGATAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:162262..162989-

>Ggra1466.t1 ID=Ggra1466.t1|Name=Ggra1466.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000844_pilon:162262..162989- (Gracilaria gracilis GNS1m male)
ATGAACAAAGTTGCCGCCCAGCGTCAGGTTGTTGTCCTTATCAGAGGCTA
TCCCGGCGTTGGCAAAACAACCGTTGCTTTCGCGCTAGCCAAGGAGCTTG
GCTATTGCCTCGTCTGTAAGGATGATGTCCGCGAGGCTGCCGTCCGCCAC
GATGCCAACGTGATGGCCGAGATTCGAGCCGTGTGTCCTGAGCACGCCAA
CTCGGTAGTTGTCGATTCCAACGACATGACCTACGAGGCCATGTTTGCTG
TGGGTTTGACTCAGCTAAAGGTCGGCGCCTCCGGCGTTGTGTTGGAAAGT
CCCCTAGGCCGTGTTGCACTTGGAGAGCGCGCGTTGGAGATTACGAGGCA
GGCCAGAGCTCTCTGTGTACTGGTGGACTGCTACGCTGAGAGATCGGTTT
GGGAGGAGAGATTAGCAAAACGCGCCTCAAAACGCGAGTACCGTCCTAGT
AGCGTGGATCAGATTATGAATCACTACTCTAATATCGAGTATCCGATGGA
GTGTGATGCGCACGTAAGTGCCGACTGCGCAAGACCACCGGCAGAGAACG
TGAGGAAAATTGCGCTTGTTATCAAACAGCTAGTTGCAGATGAGCAAGAT
GTGGAACATTTGAGTTCCAGCAGCTCCAGATAG
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