Ggra1464.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1464.t1
Unique NameGgra1464.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length89
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:160571..160969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1464Ggra1464Gracilaria gracilis GNS1m malegenetig00000844_pilon 160571..160969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1464.t1Ggra1464.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 160571..160969 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1464.t1.stop1Ggra1464.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 160571..160573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1464.t1.CDS1Ggra1464.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 160571..160736 -
Ggra1464.t1.CDS2Ggra1464.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 160869..160969 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1464.t1.exon1Ggra1464.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 160571..160736 -
Ggra1464.t1.exon2Ggra1464.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 160869..160969 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1464.t1.intron1Ggra1464.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 160737..160868 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1464.t1.start1Ggra1464.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 160967..160969 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1464.t1 ID=Ggra1464.t1|Name=Ggra1464.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=89bp
MAFVSSFTGVSVATPSRALVSPRRAAVRYARSTRMTLAPLVQEASLKLND
VAVVLASREGDFGGYTGPILGLLAIGIIIAVLTPPVKD*
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spliced messenger RNA

>Ggra1464.t1 ID=Ggra1464.t1|Name=Ggra1464.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=267bp|location=Sequence derived from alignment at tig00000844_pilon:160571..160969- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTGTCTCCTCTTTCACTGGCGTCTCTGTCGCAACCCCCTCTCG
CGCCCTCGTCTCCCCGAGGAGAGCTGCTGTTCGTTATGCGCGGTCGACAA
GAATGACCCTCGCTCCACTGGTACAGGAAGCTTCCTTGAAGCTTAACGAT
GTTGCTGTTGTATTGGCGTCCAGGGAGGGTGATTTCGGAGGTTACACAGG
CCCAATCCTTGGCCTTCTCGCCATTGGAATCATCATCGCTGTCTTGACCC
CACCTGTGAAGGACTAA
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protein sequence of Ggra1464.t1

>Ggra1464.t1 ID=Ggra1464.t1|Name=Ggra1464.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=89bp
MAFVSSFTGVSVATPSRALVSPRRAAVRYARSTRMTLAPLVQEASLKLND
VAVVLASREGDFGGYTGPILGLLAIGIIIAVLTPPVKD*
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mRNA from alignment at tig00000844_pilon:160571..160969-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1464.t1 ID=Ggra1464.t1|Name=Ggra1464.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp|location=Sequence derived from alignment at tig00000844_pilon:160571..160969- (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTCTCCTCTTTCACTGGCGTCTCTGTCGCAACCCCCTCTCG
CGCCCTCGTCTCCCCGAGGAGAGCTGCTGTTCGTTATGCGCGGTCGACAA
GGTACGTTCATCTGTTTTATTTGTAAAGCATGTCAATGGCTTTGGCGTTT
GATGTCTTCGGAGCCCCTGATACTGGATTGGATGTGGATGGAAACACTAA
CCGCACGTCCACAATGCTAATTGCATGCCACAGAATGACCCTCGCTCCAC
TGGTACAGGAAGCTTCCTTGAAGCTTAACGATGTTGCTGTTGTATTGGCG
TCCAGGGAGGGTGATTTCGGAGGTTACACAGGCCCAATCCTTGGCCTTCT
CGCCATTGGAATCATCATCGCTGTCTTGACCCCACCTGTGAAGGACTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:160571..160969-

>Ggra1464.t1 ID=Ggra1464.t1|Name=Ggra1464.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=267bp|location=Sequence derived from alignment at tig00000844_pilon:160571..160969- (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTCTCCTCTTTCACTGGCGTCTCTGTCGCAACCCCCTCTCG
CGCCCTCGTCTCCCCGAGGAGAGCTGCTGTTCGTTATGCGCGGTCGACAA
GAATGACCCTCGCTCCACTGGTACAGGAAGCTTCCTTGAAGCTTAACGAT
GTTGCTGTTGTATTGGCGTCCAGGGAGGGTGATTTCGGAGGTTACACAGG
CCCAATCCTTGGCCTTCTCGCCATTGGAATCATCATCGCTGTCTTGACCC
CACCTGTGAAGGACTAA
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