Ggra1463.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1463.t1
Unique NameGgra1463.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:159634..160314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1463Ggra1463Gracilaria gracilis GNS1m malegenetig00000844_pilon 159634..160314 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1463.t1.start1Ggra1463.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 159634..159636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1463.t1.CDS1Ggra1463.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 159634..160314 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1463.t1.exon1Ggra1463.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 159634..160314 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1463.t1.stop1Ggra1463.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 160312..160314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1463.t1Ggra1463.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 159634..160314 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1463.t1 ID=Ggra1463.t1|Name=Ggra1463.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=227bp
MNHEHMFGNKSSTGNDKAVKKERSSRPDALGLLSSLVSHDEVQLQARSYS
ASGGTPKKHVSFAKEVNVNGPDLMHQQSSSSYGSEVTPSSARLDSYRNLY
SYRYGSSSRTSSRDEPEGLTPLDGQCASSLPPIETLSRKDEKCVRKTLSQ
DWLKRTFSPRPCMANERGTLGSLSARQRQSLVSISEETENDEDEGSDLSD
NKSGDQEGSADSETHERVASLSPISR*
back to top

spliced messenger RNA

>Ggra1463.t1 ID=Ggra1463.t1|Name=Ggra1463.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000844_pilon:159634..160314+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCACGAACATATGTTTGGAAACAAATCGTCAACCGGAAACGATAA
GGCTGTGAAGAAGGAGCGTAGTTCACGTCCGGATGCGTTGGGTTTACTTT
CATCACTAGTCTCTCACGATGAAGTGCAGCTCCAAGCTAGAAGTTATTCC
GCAAGCGGGGGGACACCTAAAAAACATGTATCATTTGCAAAGGAGGTGAA
CGTAAACGGGCCTGATCTCATGCATCAACAGTCTTCATCTTCATATGGCT
CTGAGGTGACGCCCTCATCTGCACGACTCGATTCTTATCGTAACCTATAC
TCATATCGATATGGGTCAAGTAGCCGAACATCTTCTCGGGATGAACCGGA
GGGACTCACACCGCTCGACGGACAATGTGCTTCTTCCTTGCCACCTATCG
AAACTCTTAGTCGAAAAGATGAGAAATGCGTTCGTAAAACACTCTCGCAA
GACTGGTTAAAGAGGACATTCAGCCCACGACCATGTATGGCGAATGAGAG
AGGGACGTTGGGTTCGTTGTCAGCGAGGCAGAGGCAATCACTGGTGAGCA
TTTCTGAAGAAACAGAGAACGATGAAGACGAGGGTAGTGATCTGTCAGAC
AACAAGTCTGGTGATCAGGAAGGAAGTGCAGACTCTGAGACACATGAACG
GGTAGCGAGCTTGTCTCCTATCTCGCGCTGA
back to top

protein sequence of Ggra1463.t1

>Ggra1463.t1 ID=Ggra1463.t1|Name=Ggra1463.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=227bp
MNHEHMFGNKSSTGNDKAVKKERSSRPDALGLLSSLVSHDEVQLQARSYS
ASGGTPKKHVSFAKEVNVNGPDLMHQQSSSSYGSEVTPSSARLDSYRNLY
SYRYGSSSRTSSRDEPEGLTPLDGQCASSLPPIETLSRKDEKCVRKTLSQ
DWLKRTFSPRPCMANERGTLGSLSARQRQSLVSISEETENDEDEGSDLSD
NKSGDQEGSADSETHERVASLSPISR*
back to top

mRNA from alignment at tig00000844_pilon:159634..160314+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1463.t1 ID=Ggra1463.t1|Name=Ggra1463.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000844_pilon:159634..160314+ (Gracilaria gracilis GNS1m male)
ATGAACCACGAACATATGTTTGGAAACAAATCGTCAACCGGAAACGATAA
GGCTGTGAAGAAGGAGCGTAGTTCACGTCCGGATGCGTTGGGTTTACTTT
CATCACTAGTCTCTCACGATGAAGTGCAGCTCCAAGCTAGAAGTTATTCC
GCAAGCGGGGGGACACCTAAAAAACATGTATCATTTGCAAAGGAGGTGAA
CGTAAACGGGCCTGATCTCATGCATCAACAGTCTTCATCTTCATATGGCT
CTGAGGTGACGCCCTCATCTGCACGACTCGATTCTTATCGTAACCTATAC
TCATATCGATATGGGTCAAGTAGCCGAACATCTTCTCGGGATGAACCGGA
GGGACTCACACCGCTCGACGGACAATGTGCTTCTTCCTTGCCACCTATCG
AAACTCTTAGTCGAAAAGATGAGAAATGCGTTCGTAAAACACTCTCGCAA
GACTGGTTAAAGAGGACATTCAGCCCACGACCATGTATGGCGAATGAGAG
AGGGACGTTGGGTTCGTTGTCAGCGAGGCAGAGGCAATCACTGGTGAGCA
TTTCTGAAGAAACAGAGAACGATGAAGACGAGGGTAGTGATCTGTCAGAC
AACAAGTCTGGTGATCAGGAAGGAAGTGCAGACTCTGAGACACATGAACG
GGTAGCGAGCTTGTCTCCTATCTCGCGCTGA
back to top

Coding sequence (CDS) from alignment at tig00000844_pilon:159634..160314+

>Ggra1463.t1 ID=Ggra1463.t1|Name=Ggra1463.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=681bp|location=Sequence derived from alignment at tig00000844_pilon:159634..160314+ (Gracilaria gracilis GNS1m male)
ATGAACCACGAACATATGTTTGGAAACAAATCGTCAACCGGAAACGATAA
GGCTGTGAAGAAGGAGCGTAGTTCACGTCCGGATGCGTTGGGTTTACTTT
CATCACTAGTCTCTCACGATGAAGTGCAGCTCCAAGCTAGAAGTTATTCC
GCAAGCGGGGGGACACCTAAAAAACATGTATCATTTGCAAAGGAGGTGAA
CGTAAACGGGCCTGATCTCATGCATCAACAGTCTTCATCTTCATATGGCT
CTGAGGTGACGCCCTCATCTGCACGACTCGATTCTTATCGTAACCTATAC
TCATATCGATATGGGTCAAGTAGCCGAACATCTTCTCGGGATGAACCGGA
GGGACTCACACCGCTCGACGGACAATGTGCTTCTTCCTTGCCACCTATCG
AAACTCTTAGTCGAAAAGATGAGAAATGCGTTCGTAAAACACTCTCGCAA
GACTGGTTAAAGAGGACATTCAGCCCACGACCATGTATGGCGAATGAGAG
AGGGACGTTGGGTTCGTTGTCAGCGAGGCAGAGGCAATCACTGGTGAGCA
TTTCTGAAGAAACAGAGAACGATGAAGACGAGGGTAGTGATCTGTCAGAC
AACAAGTCTGGTGATCAGGAAGGAAGTGCAGACTCTGAGACACATGAACG
GGTAGCGAGCTTGTCTCCTATCTCGCGCTGA
back to top