Ggra1462.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1462.t1
Unique NameGgra1462.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:158295..159101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX47010
Preferred nameUROS
PFAMsHEM4
Max annot lvl2759|Eukaryota
KEGG rclassRC01861
KEGG koko:K01719
KEGG ReactionR03165
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
GOsGO:0003674,GO:0003824,GO:0004852,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006725,GO:0006778,GO:0006779,GO:0006780,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0033013,GO:0033014,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046502,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue9.19e-63
EggNOG OGsCOG1587@1|root,2QST9@2759|Eukaryota
EC4.2.1.75
Descriptionuroporphyrinogen III biosynthetic process
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1462Ggra1462Gracilaria gracilis GNS1m malegenetig00000844_pilon 158295..159101 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1462.t1.start1Ggra1462.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 158295..158297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1462.t1.CDS1Ggra1462.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 158295..159101 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1462.t1.exon1Ggra1462.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 158295..159101 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1462.t1.stop1Ggra1462.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 159099..159101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1462.t1Ggra1462.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 158295..159101 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1462.t1 ID=Ggra1462.t1|Name=Ggra1462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=269bp
MDSDSIFKTFHTYARVALTRELGKNKALYDELRMLYPRIEIVRLPCVETV
SGEDAEELPIALKNSSNKWIVITSPEAASIFIEAWRSADYPTLCHVAAVG
KATGDSLRSVGIDVAFEPSKATGKTLVREFPPPETNKDSVLYPASRRASN
VIVDGLSALGYEVVRLNTYSTEPVEFSEEYKMLGEGTHIVTFASPSAVKS
WFKNVGVGEGITVACIGETSAKAARDVGFKDVYFPESPGLEGWVNVVCEA
MKKYEGGIVTRGKVQGDK*
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spliced messenger RNA

>Ggra1462.t1 ID=Ggra1462.t1|Name=Ggra1462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000844_pilon:158295..159101+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCCGATTCAATCTTTAAGACCTTTCACACCTATGCACGCGTAGC
CTTGACTCGGGAGTTAGGAAAGAACAAGGCATTGTACGACGAACTACGCA
TGCTTTATCCTCGAATAGAAATTGTTCGCCTCCCCTGCGTTGAGACTGTC
TCGGGAGAAGATGCCGAAGAGCTACCTATAGCACTCAAGAACTCCTCTAA
CAAGTGGATCGTCATTACTTCACCGGAGGCAGCGTCGATCTTCATCGAAG
CTTGGAGAAGCGCGGATTATCCTACCCTTTGTCACGTTGCGGCAGTGGGA
AAAGCCACTGGCGATTCTCTTCGTTCTGTGGGTATTGACGTAGCCTTTGA
ACCGTCGAAAGCAACCGGTAAAACCCTTGTTCGAGAGTTTCCTCCTCCTG
AGACGAATAAGGATTCTGTTCTCTATCCTGCGAGTCGAAGAGCCTCCAAT
GTTATTGTTGATGGTCTCTCAGCCTTGGGTTATGAAGTAGTGAGATTGAA
CACATACTCTACGGAACCAGTGGAATTCTCTGAAGAGTACAAAATGCTGG
GTGAAGGGACTCATATTGTAACTTTTGCCTCGCCCAGCGCTGTTAAGTCT
TGGTTTAAAAATGTTGGAGTTGGAGAAGGCATCACTGTAGCTTGCATTGG
TGAGACGTCTGCTAAAGCGGCTCGGGACGTCGGGTTTAAAGACGTCTACT
TTCCTGAAAGTCCAGGTCTTGAAGGATGGGTAAACGTCGTCTGTGAAGCG
ATGAAGAAGTACGAGGGAGGAATTGTTACTAGAGGGAAAGTCCAGGGAGA
CAAATAA
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protein sequence of Ggra1462.t1

>Ggra1462.t1 ID=Ggra1462.t1|Name=Ggra1462.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=269bp
MDSDSIFKTFHTYARVALTRELGKNKALYDELRMLYPRIEIVRLPCVETV
SGEDAEELPIALKNSSNKWIVITSPEAASIFIEAWRSADYPTLCHVAAVG
KATGDSLRSVGIDVAFEPSKATGKTLVREFPPPETNKDSVLYPASRRASN
VIVDGLSALGYEVVRLNTYSTEPVEFSEEYKMLGEGTHIVTFASPSAVKS
WFKNVGVGEGITVACIGETSAKAARDVGFKDVYFPESPGLEGWVNVVCEA
MKKYEGGIVTRGKVQGDK*
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mRNA from alignment at tig00000844_pilon:158295..159101+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1462.t1 ID=Ggra1462.t1|Name=Ggra1462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000844_pilon:158295..159101+ (Gracilaria gracilis GNS1m male)
ATGGATTCCGATTCAATCTTTAAGACCTTTCACACCTATGCACGCGTAGC
CTTGACTCGGGAGTTAGGAAAGAACAAGGCATTGTACGACGAACTACGCA
TGCTTTATCCTCGAATAGAAATTGTTCGCCTCCCCTGCGTTGAGACTGTC
TCGGGAGAAGATGCCGAAGAGCTACCTATAGCACTCAAGAACTCCTCTAA
CAAGTGGATCGTCATTACTTCACCGGAGGCAGCGTCGATCTTCATCGAAG
CTTGGAGAAGCGCGGATTATCCTACCCTTTGTCACGTTGCGGCAGTGGGA
AAAGCCACTGGCGATTCTCTTCGTTCTGTGGGTATTGACGTAGCCTTTGA
ACCGTCGAAAGCAACCGGTAAAACCCTTGTTCGAGAGTTTCCTCCTCCTG
AGACGAATAAGGATTCTGTTCTCTATCCTGCGAGTCGAAGAGCCTCCAAT
GTTATTGTTGATGGTCTCTCAGCCTTGGGTTATGAAGTAGTGAGATTGAA
CACATACTCTACGGAACCAGTGGAATTCTCTGAAGAGTACAAAATGCTGG
GTGAAGGGACTCATATTGTAACTTTTGCCTCGCCCAGCGCTGTTAAGTCT
TGGTTTAAAAATGTTGGAGTTGGAGAAGGCATCACTGTAGCTTGCATTGG
TGAGACGTCTGCTAAAGCGGCTCGGGACGTCGGGTTTAAAGACGTCTACT
TTCCTGAAAGTCCAGGTCTTGAAGGATGGGTAAACGTCGTCTGTGAAGCG
ATGAAGAAGTACGAGGGAGGAATTGTTACTAGAGGGAAAGTCCAGGGAGA
CAAATAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:158295..159101+

>Ggra1462.t1 ID=Ggra1462.t1|Name=Ggra1462.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=807bp|location=Sequence derived from alignment at tig00000844_pilon:158295..159101+ (Gracilaria gracilis GNS1m male)
ATGGATTCCGATTCAATCTTTAAGACCTTTCACACCTATGCACGCGTAGC
CTTGACTCGGGAGTTAGGAAAGAACAAGGCATTGTACGACGAACTACGCA
TGCTTTATCCTCGAATAGAAATTGTTCGCCTCCCCTGCGTTGAGACTGTC
TCGGGAGAAGATGCCGAAGAGCTACCTATAGCACTCAAGAACTCCTCTAA
CAAGTGGATCGTCATTACTTCACCGGAGGCAGCGTCGATCTTCATCGAAG
CTTGGAGAAGCGCGGATTATCCTACCCTTTGTCACGTTGCGGCAGTGGGA
AAAGCCACTGGCGATTCTCTTCGTTCTGTGGGTATTGACGTAGCCTTTGA
ACCGTCGAAAGCAACCGGTAAAACCCTTGTTCGAGAGTTTCCTCCTCCTG
AGACGAATAAGGATTCTGTTCTCTATCCTGCGAGTCGAAGAGCCTCCAAT
GTTATTGTTGATGGTCTCTCAGCCTTGGGTTATGAAGTAGTGAGATTGAA
CACATACTCTACGGAACCAGTGGAATTCTCTGAAGAGTACAAAATGCTGG
GTGAAGGGACTCATATTGTAACTTTTGCCTCGCCCAGCGCTGTTAAGTCT
TGGTTTAAAAATGTTGGAGTTGGAGAAGGCATCACTGTAGCTTGCATTGG
TGAGACGTCTGCTAAAGCGGCTCGGGACGTCGGGTTTAAAGACGTCTACT
TTCCTGAAAGTCCAGGTCTTGAAGGATGGGTAAACGTCGTCTGTGAAGCG
ATGAAGAAGTACGAGGGAGGAATTGTTACTAGAGGGAAAGTCCAGGGAGA
CAAATAA
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