Ggra1461.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1461.t1
Unique NameGgra1461.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length284
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:156189..157122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD09353
Preferred nameRNMTL1
PFAMsSpoU_methylase
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02723,RC02817
KEGG koko:K00140,ko:K03437,ko:K03768,ko:K20095
KEGG ReactionR00705,R00706,R00922,R00935
KEGG Pathwayko00280,ko00410,ko00562,ko00640,ko01100,ko01200,map00280,map00410,map00562,map00640,map01100,map01200
KEGG ModuleM00013
GOsGO:0000154,GO:0000451,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Evalue6.29e-55
EggNOG OGsCOG0566@1|root,KOG2506@2759|Eukaryota
EC1.2.1.18,1.2.1.27,5.2.1.8
DescriptionRNA methyltransferase activity
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1461Ggra1461Gracilaria gracilis GNS1m malegenetig00000844_pilon 156189..157122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1461.t1Ggra1461.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 156189..157122 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1461.t1.start1Ggra1461.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 156189..156191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1461.t1.CDS1Ggra1461.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 156189..156521 +
Ggra1461.t1.CDS2Ggra1461.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 156604..157122 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1461.t1.exon1Ggra1461.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 156189..156521 +
Ggra1461.t1.exon2Ggra1461.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 156604..157122 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1461.t1.intron1Ggra1461.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 156522..156603 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1461.t1.stop1Ggra1461.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 157120..157122 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1461.t1 ID=Ggra1461.t1|Name=Ggra1461.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=284bp
MSTPASRQPKASMSTGGQISSIKNPRIKEARAMLSRRHREKTGRILLEGR
RLISDGLQQHLQPIEFFYTKQALERGNETASLRSMVQSRGAKDFLVPDAV
IRSFSDTVNPQGLVGIFEKPHPTLPDAPIMSLICDEVRDPGNLGSLLRCA
AAAGVQFVALTPGCADVWSLKALRAGMGAQFRVPVRQGMLWVDIIAYMKK
NDITIRVAEGLAEENYSLVNWSTPSALIVGSEAVGPSKEAYGAAHEKIAI
PMSEEVESLNVAMAGAVILFEAKRQRDCDKRKQ*
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spliced messenger RNA

>Ggra1461.t1 ID=Ggra1461.t1|Name=Ggra1461.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000844_pilon:156189..157122+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACTCCTGCTTCTCGTCAGCCGAAAGCATCAATGTCTACTGGTGG
CCAAATATCCAGCATTAAGAATCCTCGCATAAAGGAAGCTCGGGCCATGC
TGAGTCGGCGTCATCGTGAGAAGACAGGGCGAATTCTTTTAGAAGGTCGA
CGTCTGATTTCAGATGGCTTACAACAACATCTTCAGCCCATCGAATTCTT
CTATACAAAGCAAGCACTGGAACGAGGTAATGAAACCGCTTCGCTACGCT
CCATGGTGCAGAGTCGAGGTGCGAAAGACTTCCTGGTTCCAGATGCTGTA
ATCCGTTCCTTTTCTGATACAGTCAATCCTCAAGGCTTGGTTGGCATTTT
CGAAAAGCCTCATCCTACTCTGCCGGATGCGCCAATAATGTCATTGATAT
GTGACGAAGTTCGCGATCCTGGGAATCTTGGAAGTTTACTTCGATGCGCA
GCTGCAGCAGGTGTTCAGTTTGTAGCCCTAACCCCTGGGTGTGCCGATGT
GTGGAGCCTAAAAGCCCTTCGAGCGGGAATGGGCGCGCAATTCAGGGTGC
CTGTCCGGCAAGGAATGTTATGGGTTGACATAATCGCATACATGAAAAAG
AATGATATCACGATCCGCGTAGCTGAAGGATTGGCTGAGGAGAACTATAG
CCTTGTAAACTGGTCGACCCCTAGTGCCCTTATCGTTGGGTCTGAAGCTG
TAGGGCCAAGCAAGGAAGCTTATGGTGCAGCTCATGAGAAAATCGCGATA
CCAATGTCCGAGGAAGTCGAGAGTCTAAATGTAGCAATGGCGGGCGCAGT
GATTCTATTTGAAGCAAAGCGTCAACGTGACTGCGATAAACGAAAGCAAT
AA
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protein sequence of Ggra1461.t1

>Ggra1461.t1 ID=Ggra1461.t1|Name=Ggra1461.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=284bp
MSTPASRQPKASMSTGGQISSIKNPRIKEARAMLSRRHREKTGRILLEGR
RLISDGLQQHLQPIEFFYTKQALERGNETASLRSMVQSRGAKDFLVPDAV
IRSFSDTVNPQGLVGIFEKPHPTLPDAPIMSLICDEVRDPGNLGSLLRCA
AAAGVQFVALTPGCADVWSLKALRAGMGAQFRVPVRQGMLWVDIIAYMKK
NDITIRVAEGLAEENYSLVNWSTPSALIVGSEAVGPSKEAYGAAHEKIAI
PMSEEVESLNVAMAGAVILFEAKRQRDCDKRKQ*
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mRNA from alignment at tig00000844_pilon:156189..157122+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1461.t1 ID=Ggra1461.t1|Name=Ggra1461.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=934bp|location=Sequence derived from alignment at tig00000844_pilon:156189..157122+ (Gracilaria gracilis GNS1m male)
ATGTCGACTCCTGCTTCTCGTCAGCCGAAAGCATCAATGTCTACTGGTGG
CCAAATATCCAGCATTAAGAATCCTCGCATAAAGGAAGCTCGGGCCATGC
TGAGTCGGCGTCATCGTGAGAAGACAGGGCGAATTCTTTTAGAAGGTCGA
CGTCTGATTTCAGATGGCTTACAACAACATCTTCAGCCCATCGAATTCTT
CTATACAAAGCAAGCACTGGAACGAGGTAATGAAACCGCTTCGCTACGCT
CCATGGTGCAGAGTCGAGGTGCGAAAGACTTCCTGGTTCCAGATGCTGTA
ATCCGTTCCTTTTCTGATACAGTCAATCCTCAAGTAAGTTCAACTTGCAG
AACTTCTAACTGTTGTGTGCTCAAATTATAGTGGACACCTAACTCTCATC
GATCATCCTCGGAAGGGCTTGGTTGGCATTTTCGAAAAGCCTCATCCTAC
TCTGCCGGATGCGCCAATAATGTCATTGATATGTGACGAAGTTCGCGATC
CTGGGAATCTTGGAAGTTTACTTCGATGCGCAGCTGCAGCAGGTGTTCAG
TTTGTAGCCCTAACCCCTGGGTGTGCCGATGTGTGGAGCCTAAAAGCCCT
TCGAGCGGGAATGGGCGCGCAATTCAGGGTGCCTGTCCGGCAAGGAATGT
TATGGGTTGACATAATCGCATACATGAAAAAGAATGATATCACGATCCGC
GTAGCTGAAGGATTGGCTGAGGAGAACTATAGCCTTGTAAACTGGTCGAC
CCCTAGTGCCCTTATCGTTGGGTCTGAAGCTGTAGGGCCAAGCAAGGAAG
CTTATGGTGCAGCTCATGAGAAAATCGCGATACCAATGTCCGAGGAAGTC
GAGAGTCTAAATGTAGCAATGGCGGGCGCAGTGATTCTATTTGAAGCAAA
GCGTCAACGTGACTGCGATAAACGAAAGCAATAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:156189..157122+

>Ggra1461.t1 ID=Ggra1461.t1|Name=Ggra1461.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00000844_pilon:156189..157122+ (Gracilaria gracilis GNS1m male)
ATGTCGACTCCTGCTTCTCGTCAGCCGAAAGCATCAATGTCTACTGGTGG
CCAAATATCCAGCATTAAGAATCCTCGCATAAAGGAAGCTCGGGCCATGC
TGAGTCGGCGTCATCGTGAGAAGACAGGGCGAATTCTTTTAGAAGGTCGA
CGTCTGATTTCAGATGGCTTACAACAACATCTTCAGCCCATCGAATTCTT
CTATACAAAGCAAGCACTGGAACGAGGTAATGAAACCGCTTCGCTACGCT
CCATGGTGCAGAGTCGAGGTGCGAAAGACTTCCTGGTTCCAGATGCTGTA
ATCCGTTCCTTTTCTGATACAGTCAATCCTCAAGGCTTGGTTGGCATTTT
CGAAAAGCCTCATCCTACTCTGCCGGATGCGCCAATAATGTCATTGATAT
GTGACGAAGTTCGCGATCCTGGGAATCTTGGAAGTTTACTTCGATGCGCA
GCTGCAGCAGGTGTTCAGTTTGTAGCCCTAACCCCTGGGTGTGCCGATGT
GTGGAGCCTAAAAGCCCTTCGAGCGGGAATGGGCGCGCAATTCAGGGTGC
CTGTCCGGCAAGGAATGTTATGGGTTGACATAATCGCATACATGAAAAAG
AATGATATCACGATCCGCGTAGCTGAAGGATTGGCTGAGGAGAACTATAG
CCTTGTAAACTGGTCGACCCCTAGTGCCCTTATCGTTGGGTCTGAAGCTG
TAGGGCCAAGCAAGGAAGCTTATGGTGCAGCTCATGAGAAAATCGCGATA
CCAATGTCCGAGGAAGTCGAGAGTCTAAATGTAGCAATGGCGGGCGCAGT
GATTCTATTTGAAGCAAAGCGTCAACGTGACTGCGATAAACGAAAGCAAT
AA
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