Ggra1458.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1458.t1
Unique NameGgra1458.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length563
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:145849..147603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMK269CT
PFAMsDHquinase_I,Shikimate_DH,Shikimate_dh_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00206,RC00848
KEGG koko:K13832
KEGG ReactionR02413,R03084
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004764,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0055114,GO:0061458,GO:0071704,GO:1901576,GO:1901615
Evalue8.29e-120
EggNOG OGsCOG0169@1|root,KOG0692@2759|Eukaryota
EC1.1.1.25,4.2.1.10
Descriptionshikimate 3-dehydrogenase (NADP ) activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1458Ggra1458Gracilaria gracilis GNS1m malegenetig00000844_pilon 145849..147603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1458.t1Ggra1458.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 145849..147603 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1458.t1.start1Ggra1458.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 145849..145851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1458.t1.CDS1Ggra1458.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 145849..146067 +
Ggra1458.t1.CDS2Ggra1458.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 146134..147603 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1458.t1.exon1Ggra1458.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 145849..146067 +
Ggra1458.t1.exon2Ggra1458.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 146134..147603 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1458.t1.intron1Ggra1458.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 146068..146133 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1458.t1.stop1Ggra1458.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 147601..147603 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1458.t1 ID=Ggra1458.t1|Name=Ggra1458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=563bp
MAIAFANVGGLHSTSSKSLPQVSRQSNVRWECRLRSFSVRRPSFNNVKPQ
PPSAITKICTSLTGATVHEQLQQAREAQHAGADLVEIRVDLLDDSSSDQW
EQILQGSPLPTIVTNRAAWEGGNCRSTEVARLQTLIRAVQLGAQHVDVEL
RAIPLFLQYLKSSHISFPLSSTKLIVSYHDFNSSLNSEQIDQILTDMRQA
GADVSKIAMTATSALDNCTVFRALQNTSQSSVILAMGEAGQPSRILAPKY
GSYLTFASVGAGAESAPGQIHASTLREMYRFHEIQPSTPVYGVIGNPISQ
SMSPALHNAAMATSDINGVFVAFKVGSHCPEFIRNMCNLGVHGFAVTKPG
KEAAMDAMDEIDIVAQKIGAMNTVVRQTNGSLKGYNTDWVAAISAVEDHL
DNGINGKCVVCIGAGGAGKALAYGALERGAAKVVVVNRTKSKAFELVRDL
GERAEAMSLNEFNDDVSSYDVLMNTTSVGMHPNVDDSPVSSQRLLQGAVV
FDAVYNPLETKLLIDAKKRGCVTVSGLEMFVRQAAKQFQLWFPNAVAPVE
VMRKVVLEKLVA*
back to top

spliced messenger RNA

>Ggra1458.t1 ID=Ggra1458.t1|Name=Ggra1458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00000844_pilon:145849..147603+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATTGCGTTTGCAAACGTCGGAGGGTTACATTCGACTTCATCCAA
GTCGCTTCCTCAGGTTTCGAGACAATCTAACGTGCGGTGGGAGTGCCGGC
TGCGATCCTTCAGCGTGAGACGGCCTAGCTTCAACAATGTTAAGCCTCAA
CCGCCCTCGGCGATCACCAAAATTTGTACAAGTCTGACTGGTGCCACTGT
TCATGAGCAACTCCAACAAGCTCGAGAAGCGCAACATGCCGGCGCAGATC
TTGTCGAGATTCGAGTCGACTTACTTGATGACTCTTCGTCAGATCAATGG
GAGCAAATTTTGCAAGGTTCACCACTTCCTACCATCGTAACTAATCGCGC
AGCGTGGGAGGGGGGGAACTGCCGTTCTACTGAAGTTGCGAGACTGCAAA
CGCTTATACGTGCGGTGCAGCTTGGCGCTCAACACGTTGACGTTGAGCTG
AGAGCCATTCCGCTCTTTCTTCAGTATCTCAAGTCCAGTCATATTTCTTT
TCCCCTGTCGTCAACGAAGCTTATCGTTTCCTATCATGACTTTAACAGCT
CGCTTAATTCCGAACAGATTGATCAAATCTTAACTGATATGCGTCAAGCA
GGCGCTGACGTTAGCAAAATTGCTATGACTGCCACCTCTGCTTTAGACAA
TTGTACCGTATTCAGAGCTCTGCAGAATACTTCGCAATCTTCAGTTATTC
TCGCAATGGGCGAAGCAGGACAGCCGTCACGAATTCTTGCTCCAAAGTAT
GGTTCCTATCTAACTTTCGCGTCCGTTGGAGCTGGTGCAGAGTCTGCCCC
GGGGCAGATACACGCCAGCACATTGCGTGAAATGTACCGTTTTCATGAAA
TCCAGCCATCGACTCCTGTGTACGGGGTCATTGGAAACCCAATCAGTCAA
TCAATGAGTCCTGCTTTGCATAATGCAGCGATGGCTACGTCTGACATTAA
TGGTGTATTTGTGGCCTTCAAAGTTGGGAGTCATTGCCCTGAATTCATTC
GTAACATGTGCAACCTCGGCGTTCACGGCTTCGCTGTTACTAAGCCCGGA
AAGGAAGCGGCAATGGATGCGATGGATGAAATTGATATCGTTGCTCAAAA
GATCGGGGCCATGAACACCGTAGTGCGCCAGACAAATGGGTCTCTTAAGG
GCTACAACACAGACTGGGTTGCTGCCATATCCGCCGTTGAAGACCATCTG
GACAACGGGATTAATGGAAAATGTGTAGTCTGCATTGGAGCAGGGGGTGC
TGGAAAGGCATTGGCATACGGAGCTCTTGAAAGAGGAGCTGCAAAAGTAG
TAGTTGTGAACAGGACAAAGAGCAAGGCCTTTGAGCTGGTCCGTGACCTT
GGTGAACGAGCAGAAGCAATGTCCTTGAATGAATTCAATGATGATGTGTC
AAGTTACGACGTTCTAATGAATACTACGAGTGTTGGAATGCATCCCAATG
TGGACGACTCTCCAGTTAGCAGTCAAAGGTTGTTGCAAGGTGCTGTGGTA
TTTGATGCTGTCTATAATCCTTTGGAGACGAAACTTCTAATAGATGCCAA
GAAAAGGGGTTGCGTTACAGTCTCAGGATTAGAAATGTTTGTGCGCCAGG
CAGCCAAGCAGTTCCAGTTGTGGTTCCCGAACGCCGTTGCACCGGTCGAG
GTCATGAGAAAGGTCGTGCTAGAGAAACTTGTGGCCTAA
back to top

protein sequence of Ggra1458.t1

>Ggra1458.t1 ID=Ggra1458.t1|Name=Ggra1458.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=563bp
MAIAFANVGGLHSTSSKSLPQVSRQSNVRWECRLRSFSVRRPSFNNVKPQ
PPSAITKICTSLTGATVHEQLQQAREAQHAGADLVEIRVDLLDDSSSDQW
EQILQGSPLPTIVTNRAAWEGGNCRSTEVARLQTLIRAVQLGAQHVDVEL
RAIPLFLQYLKSSHISFPLSSTKLIVSYHDFNSSLNSEQIDQILTDMRQA
GADVSKIAMTATSALDNCTVFRALQNTSQSSVILAMGEAGQPSRILAPKY
GSYLTFASVGAGAESAPGQIHASTLREMYRFHEIQPSTPVYGVIGNPISQ
SMSPALHNAAMATSDINGVFVAFKVGSHCPEFIRNMCNLGVHGFAVTKPG
KEAAMDAMDEIDIVAQKIGAMNTVVRQTNGSLKGYNTDWVAAISAVEDHL
DNGINGKCVVCIGAGGAGKALAYGALERGAAKVVVVNRTKSKAFELVRDL
GERAEAMSLNEFNDDVSSYDVLMNTTSVGMHPNVDDSPVSSQRLLQGAVV
FDAVYNPLETKLLIDAKKRGCVTVSGLEMFVRQAAKQFQLWFPNAVAPVE
VMRKVVLEKLVA*
back to top

mRNA from alignment at tig00000844_pilon:145849..147603+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1458.t1 ID=Ggra1458.t1|Name=Ggra1458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1755bp|location=Sequence derived from alignment at tig00000844_pilon:145849..147603+ (Gracilaria gracilis GNS1m male)
ATGGCCATTGCGTTTGCAAACGTCGGAGGGTTACATTCGACTTCATCCAA
GTCGCTTCCTCAGGTTTCGAGACAATCTAACGTGCGGTGGGAGTGCCGGC
TGCGATCCTTCAGCGTGAGACGGCCTAGCTTCAACAATGTTAAGCCTCAA
CCGCCCTCGGCGATCACCAAAATTTGTACAAGTCTGACTGGTGCCACTGT
TCATGAGCAACTCCAACAAGTACGTCATTATATACATCTTCTTGCTTCAC
AATTCGATACTAACCTCGTCCACGATCCAAATCAGGCTCGAGAAGCGCAA
CATGCCGGCGCAGATCTTGTCGAGATTCGAGTCGACTTACTTGATGACTC
TTCGTCAGATCAATGGGAGCAAATTTTGCAAGGTTCACCACTTCCTACCA
TCGTAACTAATCGCGCAGCGTGGGAGGGGGGGAACTGCCGTTCTACTGAA
GTTGCGAGACTGCAAACGCTTATACGTGCGGTGCAGCTTGGCGCTCAACA
CGTTGACGTTGAGCTGAGAGCCATTCCGCTCTTTCTTCAGTATCTCAAGT
CCAGTCATATTTCTTTTCCCCTGTCGTCAACGAAGCTTATCGTTTCCTAT
CATGACTTTAACAGCTCGCTTAATTCCGAACAGATTGATCAAATCTTAAC
TGATATGCGTCAAGCAGGCGCTGACGTTAGCAAAATTGCTATGACTGCCA
CCTCTGCTTTAGACAATTGTACCGTATTCAGAGCTCTGCAGAATACTTCG
CAATCTTCAGTTATTCTCGCAATGGGCGAAGCAGGACAGCCGTCACGAAT
TCTTGCTCCAAAGTATGGTTCCTATCTAACTTTCGCGTCCGTTGGAGCTG
GTGCAGAGTCTGCCCCGGGGCAGATACACGCCAGCACATTGCGTGAAATG
TACCGTTTTCATGAAATCCAGCCATCGACTCCTGTGTACGGGGTCATTGG
AAACCCAATCAGTCAATCAATGAGTCCTGCTTTGCATAATGCAGCGATGG
CTACGTCTGACATTAATGGTGTATTTGTGGCCTTCAAAGTTGGGAGTCAT
TGCCCTGAATTCATTCGTAACATGTGCAACCTCGGCGTTCACGGCTTCGC
TGTTACTAAGCCCGGAAAGGAAGCGGCAATGGATGCGATGGATGAAATTG
ATATCGTTGCTCAAAAGATCGGGGCCATGAACACCGTAGTGCGCCAGACA
AATGGGTCTCTTAAGGGCTACAACACAGACTGGGTTGCTGCCATATCCGC
CGTTGAAGACCATCTGGACAACGGGATTAATGGAAAATGTGTAGTCTGCA
TTGGAGCAGGGGGTGCTGGAAAGGCATTGGCATACGGAGCTCTTGAAAGA
GGAGCTGCAAAAGTAGTAGTTGTGAACAGGACAAAGAGCAAGGCCTTTGA
GCTGGTCCGTGACCTTGGTGAACGAGCAGAAGCAATGTCCTTGAATGAAT
TCAATGATGATGTGTCAAGTTACGACGTTCTAATGAATACTACGAGTGTT
GGAATGCATCCCAATGTGGACGACTCTCCAGTTAGCAGTCAAAGGTTGTT
GCAAGGTGCTGTGGTATTTGATGCTGTCTATAATCCTTTGGAGACGAAAC
TTCTAATAGATGCCAAGAAAAGGGGTTGCGTTACAGTCTCAGGATTAGAA
ATGTTTGTGCGCCAGGCAGCCAAGCAGTTCCAGTTGTGGTTCCCGAACGC
CGTTGCACCGGTCGAGGTCATGAGAAAGGTCGTGCTAGAGAAACTTGTGG
CCTAA
back to top

Coding sequence (CDS) from alignment at tig00000844_pilon:145849..147603+

>Ggra1458.t1 ID=Ggra1458.t1|Name=Ggra1458.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1689bp|location=Sequence derived from alignment at tig00000844_pilon:145849..147603+ (Gracilaria gracilis GNS1m male)
ATGGCCATTGCGTTTGCAAACGTCGGAGGGTTACATTCGACTTCATCCAA
GTCGCTTCCTCAGGTTTCGAGACAATCTAACGTGCGGTGGGAGTGCCGGC
TGCGATCCTTCAGCGTGAGACGGCCTAGCTTCAACAATGTTAAGCCTCAA
CCGCCCTCGGCGATCACCAAAATTTGTACAAGTCTGACTGGTGCCACTGT
TCATGAGCAACTCCAACAAGCTCGAGAAGCGCAACATGCCGGCGCAGATC
TTGTCGAGATTCGAGTCGACTTACTTGATGACTCTTCGTCAGATCAATGG
GAGCAAATTTTGCAAGGTTCACCACTTCCTACCATCGTAACTAATCGCGC
AGCGTGGGAGGGGGGGAACTGCCGTTCTACTGAAGTTGCGAGACTGCAAA
CGCTTATACGTGCGGTGCAGCTTGGCGCTCAACACGTTGACGTTGAGCTG
AGAGCCATTCCGCTCTTTCTTCAGTATCTCAAGTCCAGTCATATTTCTTT
TCCCCTGTCGTCAACGAAGCTTATCGTTTCCTATCATGACTTTAACAGCT
CGCTTAATTCCGAACAGATTGATCAAATCTTAACTGATATGCGTCAAGCA
GGCGCTGACGTTAGCAAAATTGCTATGACTGCCACCTCTGCTTTAGACAA
TTGTACCGTATTCAGAGCTCTGCAGAATACTTCGCAATCTTCAGTTATTC
TCGCAATGGGCGAAGCAGGACAGCCGTCACGAATTCTTGCTCCAAAGTAT
GGTTCCTATCTAACTTTCGCGTCCGTTGGAGCTGGTGCAGAGTCTGCCCC
GGGGCAGATACACGCCAGCACATTGCGTGAAATGTACCGTTTTCATGAAA
TCCAGCCATCGACTCCTGTGTACGGGGTCATTGGAAACCCAATCAGTCAA
TCAATGAGTCCTGCTTTGCATAATGCAGCGATGGCTACGTCTGACATTAA
TGGTGTATTTGTGGCCTTCAAAGTTGGGAGTCATTGCCCTGAATTCATTC
GTAACATGTGCAACCTCGGCGTTCACGGCTTCGCTGTTACTAAGCCCGGA
AAGGAAGCGGCAATGGATGCGATGGATGAAATTGATATCGTTGCTCAAAA
GATCGGGGCCATGAACACCGTAGTGCGCCAGACAAATGGGTCTCTTAAGG
GCTACAACACAGACTGGGTTGCTGCCATATCCGCCGTTGAAGACCATCTG
GACAACGGGATTAATGGAAAATGTGTAGTCTGCATTGGAGCAGGGGGTGC
TGGAAAGGCATTGGCATACGGAGCTCTTGAAAGAGGAGCTGCAAAAGTAG
TAGTTGTGAACAGGACAAAGAGCAAGGCCTTTGAGCTGGTCCGTGACCTT
GGTGAACGAGCAGAAGCAATGTCCTTGAATGAATTCAATGATGATGTGTC
AAGTTACGACGTTCTAATGAATACTACGAGTGTTGGAATGCATCCCAATG
TGGACGACTCTCCAGTTAGCAGTCAAAGGTTGTTGCAAGGTGCTGTGGTA
TTTGATGCTGTCTATAATCCTTTGGAGACGAAACTTCTAATAGATGCCAA
GAAAAGGGGTTGCGTTACAGTCTCAGGATTAGAAATGTTTGTGCGCCAGG
CAGCCAAGCAGTTCCAGTTGTGGTTCCCGAACGCCGTTGCACCGGTCGAG
GTCATGAGAAAGGTCGTGCTAGAGAAACTTGTGGCCTAA
back to top