Ggra1457.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1457.t1
Unique Name	Ggra1457.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	764

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:138578..140869 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709333.1
PFAMs	DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N,DUF726,VPS9
Max annot lvl	2759\|Eukaryota
Evalue	2e-45
EggNOG OGs	KOG2385@1\|root,KOG2385@2759\|Eukaryota
Description	Protein of unknown function (DUF726)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1457	Ggra1457	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 138578..140869 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1457.t1.stop1	Ggra1457.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 138578..138580 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1457.t1.CDS1	Ggra1457.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 138578..140869 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1457.t1.exon1	Ggra1457.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 138578..140869 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1457.t1.start1	Ggra1457.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 140867..140869 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1457.t1	Ggra1457.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 138578..140869 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:138578..140869-
coding sequence from alignment at tig00000844_pilon:138578..140869-

mRNA sequence

>Ggra1457.t1 ID=Ggra1457.t1|Name=Ggra1457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=764bp
MSSATGLEASTTSPTASLQGHELGFEPAGPGQNLPAAGILAACASSLAPD
QVWLRAYLTRALLAFSLPNGARDGLIEQALEIASSRKPILRAVEVADAYL
TASSFGQSQAIQLISAVLEADVINSTTYDARAREVLMRYISALSLPPRIL
YAAEHQLAELVFALAENATVNGENVESVGEDSAHARRRANIKWLKVGAAG
LFGGLALGLSGGLIAPALLPALGTVGLASATAPLAALGGGGAVAVGSLFG
AAGAGVGAAAMASRTGDVEEFSFERCTPLHDNGSQAYDTARITPTENIHE
ALVPLSHETKVLGGLLVWEILTSQEFDMVVPARVAFGVQIRDIVQGGNGP
VSQWLLPEQFMDVGGLDRNGKGKRRRTTGAITITENKMYLLRFRLMPGSL
TVNVSYRVAFVPPGKEPPVWIMGENEEHATEREKGKARSLSMAILVPGLL
SAAENSAYPGMCADQFHTTTSALAKIGIQTFALRWESQLLLELSNALRKL
IARMTVSIAAQNGAMMVLPALAGAVALPISIIGALRTLIGNIWARAISHG
VECGYMLAAELASRSFGNRPIVLAGFSVGALVVFSCLQELARRKLVGIVH
DVYLVGAPCTADIAAWRDVRSVVSGRLVNAYDPRDWYLELYHRGTNLGSV
AGNKPVRDKEGIANVENVCLVHEQVANHMDYAKRAQQILVDLGVADPEGR
SPWSKDLQVRNKGSEFDRTEEPTSEHSFVSESGSIAFEEEEVVLFKAKKR
GKLRKKGSASSNS*

spliced messenger RNA

>Ggra1457.t1 ID=Ggra1457.t1|Name=Ggra1457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2292bp|location=Sequence derived from alignment at tig00000844_pilon:138578..140869- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGTGCAACCGGTTTGGAAGCTTCCACAACATCGCCTACCGCTTC
TCTTCAGGGTCACGAACTAGGCTTTGAGCCAGCTGGCCCGGGTCAGAACC
TCCCCGCAGCCGGTATTCTTGCTGCTTGTGCTTCATCGCTTGCTCCCGAT
CAGGTATGGCTTCGAGCCTATCTAACGAGAGCGCTTCTCGCTTTTTCGCT
ACCAAATGGCGCTCGTGACGGCCTCATTGAGCAGGCTTTAGAAATCGCCT
CATCTCGAAAGCCAATACTGCGCGCTGTAGAAGTTGCAGATGCGTATCTT
ACTGCCTCCTCGTTCGGCCAGTCACAAGCTATCCAACTCATCTCCGCAGT
TCTTGAGGCTGATGTAATAAATTCTACGACTTACGATGCACGAGCAAGAG
AAGTGTTGATGCGTTACATCTCAGCGCTGAGTCTTCCCCCACGCATCCTG
TATGCTGCAGAGCACCAACTCGCAGAACTTGTATTTGCTTTGGCTGAGAA
CGCGACAGTGAATGGGGAAAACGTCGAGTCTGTCGGGGAAGACTCTGCTC
ATGCGCGACGCAGAGCAAATATAAAGTGGCTTAAGGTTGGTGCTGCAGGT
TTATTTGGGGGTCTTGCCCTTGGTCTTAGTGGTGGGTTGATTGCTCCAGC
GCTGCTGCCGGCTCTGGGCACCGTTGGTCTGGCTAGTGCAACCGCTCCAT
TAGCGGCACTCGGTGGAGGTGGTGCTGTCGCCGTTGGAAGTCTTTTCGGA
GCTGCAGGTGCTGGTGTCGGGGCCGCAGCAATGGCAAGTCGAACAGGAGA
TGTAGAGGAGTTTTCGTTTGAGCGATGTACACCCTTGCATGACAATGGTT
CCCAAGCTTACGATACGGCTCGCATAACGCCCACGGAGAACATTCACGAG
GCGTTGGTTCCACTTTCTCATGAAACGAAAGTCCTTGGCGGACTCTTGGT
TTGGGAAATACTAACCTCGCAGGAGTTTGATATGGTCGTTCCTGCTCGAG
TTGCGTTTGGGGTTCAAATCCGAGACATTGTGCAGGGAGGAAACGGGCCA
GTTTCCCAATGGCTTCTTCCGGAGCAGTTCATGGACGTAGGTGGCCTTGA
CAGGAATGGGAAGGGTAAACGTCGACGAACCACAGGAGCTATCACAATAA
CTGAGAACAAAATGTATCTACTTCGCTTTCGATTGATGCCGGGATCTCTC
ACTGTCAATGTTTCTTATCGAGTTGCCTTTGTACCGCCTGGGAAGGAGCC
TCCTGTATGGATTATGGGCGAAAACGAAGAACATGCAACTGAGCGTGAGA
AAGGCAAAGCGAGGTCTCTGTCTATGGCGATCCTTGTCCCAGGACTACTT
AGCGCTGCTGAAAACAGCGCATATCCTGGTATGTGTGCCGACCAGTTTCA
CACAACAACCTCGGCATTGGCAAAGATTGGGATACAGACGTTTGCATTGA
GATGGGAATCTCAGCTTCTTTTGGAACTAAGTAACGCGCTCAGGAAGCTA
ATTGCAAGAATGACCGTTTCTATTGCAGCGCAAAACGGTGCTATGATGGT
TTTGCCCGCTCTTGCGGGGGCTGTAGCCTTACCAATTTCTATAATCGGTG
CCCTGCGAACATTGATTGGTAATATATGGGCAAGGGCAATCTCACACGGT
GTTGAATGTGGATATATGCTCGCAGCAGAACTTGCATCGAGGTCATTCGG
GAATCGGCCTATCGTGCTTGCAGGTTTCTCGGTGGGAGCTCTGGTAGTGT
TCAGTTGTTTGCAGGAGCTCGCGCGTCGCAAACTCGTTGGTATTGTGCAT
GATGTGTATCTTGTCGGTGCTCCTTGTACCGCAGATATTGCAGCGTGGCG
AGATGTCAGATCGGTTGTGTCAGGAAGGCTGGTGAATGCCTACGATCCGC
GTGACTGGTACTTGGAATTGTATCACAGAGGAACAAATTTGGGCTCTGTA
GCTGGAAACAAACCCGTGAGAGATAAGGAAGGAATCGCTAACGTTGAAAA
CGTGTGCCTAGTTCATGAACAAGTAGCTAACCATATGGACTACGCGAAGC
GAGCGCAGCAAATACTGGTAGATCTCGGGGTTGCAGATCCAGAAGGCAGG
AGCCCATGGTCAAAGGACTTGCAAGTACGAAACAAAGGATCTGAGTTCGA
TCGTACCGAAGAACCAACTTCCGAACATAGCTTCGTTTCAGAAAGCGGTT
CTATAGCCTTCGAAGAAGAAGAAGTCGTGCTGTTCAAAGCAAAAAAGCGA
GGGAAGCTTCGTAAAAAGGGAAGCGCTAGTAGTAATAGCTGA

protein sequence of Ggra1457.t1

>Ggra1457.t1 ID=Ggra1457.t1|Name=Ggra1457.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=764bp
MSSATGLEASTTSPTASLQGHELGFEPAGPGQNLPAAGILAACASSLAPD
QVWLRAYLTRALLAFSLPNGARDGLIEQALEIASSRKPILRAVEVADAYL
TASSFGQSQAIQLISAVLEADVINSTTYDARAREVLMRYISALSLPPRIL
YAAEHQLAELVFALAENATVNGENVESVGEDSAHARRRANIKWLKVGAAG
LFGGLALGLSGGLIAPALLPALGTVGLASATAPLAALGGGGAVAVGSLFG
AAGAGVGAAAMASRTGDVEEFSFERCTPLHDNGSQAYDTARITPTENIHE
ALVPLSHETKVLGGLLVWEILTSQEFDMVVPARVAFGVQIRDIVQGGNGP
VSQWLLPEQFMDVGGLDRNGKGKRRRTTGAITITENKMYLLRFRLMPGSL
TVNVSYRVAFVPPGKEPPVWIMGENEEHATEREKGKARSLSMAILVPGLL
SAAENSAYPGMCADQFHTTTSALAKIGIQTFALRWESQLLLELSNALRKL
IARMTVSIAAQNGAMMVLPALAGAVALPISIIGALRTLIGNIWARAISHG
VECGYMLAAELASRSFGNRPIVLAGFSVGALVVFSCLQELARRKLVGIVH
DVYLVGAPCTADIAAWRDVRSVVSGRLVNAYDPRDWYLELYHRGTNLGSV
AGNKPVRDKEGIANVENVCLVHEQVANHMDYAKRAQQILVDLGVADPEGR
SPWSKDLQVRNKGSEFDRTEEPTSEHSFVSESGSIAFEEEEVVLFKAKKR
GKLRKKGSASSNS*

mRNA from alignment at tig00000844_pilon:138578..140869-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1457.t1 ID=Ggra1457.t1|Name=Ggra1457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2292bp|location=Sequence derived from alignment at tig00000844_pilon:138578..140869- (Gracilaria gracilis GNS1m male)
ATGAGCAGTGCAACCGGTTTGGAAGCTTCCACAACATCGCCTACCGCTTC
TCTTCAGGGTCACGAACTAGGCTTTGAGCCAGCTGGCCCGGGTCAGAACC
TCCCCGCAGCCGGTATTCTTGCTGCTTGTGCTTCATCGCTTGCTCCCGAT
CAGGTATGGCTTCGAGCCTATCTAACGAGAGCGCTTCTCGCTTTTTCGCT
ACCAAATGGCGCTCGTGACGGCCTCATTGAGCAGGCTTTAGAAATCGCCT
CATCTCGAAAGCCAATACTGCGCGCTGTAGAAGTTGCAGATGCGTATCTT
ACTGCCTCCTCGTTCGGCCAGTCACAAGCTATCCAACTCATCTCCGCAGT
TCTTGAGGCTGATGTAATAAATTCTACGACTTACGATGCACGAGCAAGAG
AAGTGTTGATGCGTTACATCTCAGCGCTGAGTCTTCCCCCACGCATCCTG
TATGCTGCAGAGCACCAACTCGCAGAACTTGTATTTGCTTTGGCTGAGAA
CGCGACAGTGAATGGGGAAAACGTCGAGTCTGTCGGGGAAGACTCTGCTC
ATGCGCGACGCAGAGCAAATATAAAGTGGCTTAAGGTTGGTGCTGCAGGT
TTATTTGGGGGTCTTGCCCTTGGTCTTAGTGGTGGGTTGATTGCTCCAGC
GCTGCTGCCGGCTCTGGGCACCGTTGGTCTGGCTAGTGCAACCGCTCCAT
TAGCGGCACTCGGTGGAGGTGGTGCTGTCGCCGTTGGAAGTCTTTTCGGA
GCTGCAGGTGCTGGTGTCGGGGCCGCAGCAATGGCAAGTCGAACAGGAGA
TGTAGAGGAGTTTTCGTTTGAGCGATGTACACCCTTGCATGACAATGGTT
CCCAAGCTTACGATACGGCTCGCATAACGCCCACGGAGAACATTCACGAG
GCGTTGGTTCCACTTTCTCATGAAACGAAAGTCCTTGGCGGACTCTTGGT
TTGGGAAATACTAACCTCGCAGGAGTTTGATATGGTCGTTCCTGCTCGAG
TTGCGTTTGGGGTTCAAATCCGAGACATTGTGCAGGGAGGAAACGGGCCA
GTTTCCCAATGGCTTCTTCCGGAGCAGTTCATGGACGTAGGTGGCCTTGA
CAGGAATGGGAAGGGTAAACGTCGACGAACCACAGGAGCTATCACAATAA
CTGAGAACAAAATGTATCTACTTCGCTTTCGATTGATGCCGGGATCTCTC
ACTGTCAATGTTTCTTATCGAGTTGCCTTTGTACCGCCTGGGAAGGAGCC
TCCTGTATGGATTATGGGCGAAAACGAAGAACATGCAACTGAGCGTGAGA
AAGGCAAAGCGAGGTCTCTGTCTATGGCGATCCTTGTCCCAGGACTACTT
AGCGCTGCTGAAAACAGCGCATATCCTGGTATGTGTGCCGACCAGTTTCA
CACAACAACCTCGGCATTGGCAAAGATTGGGATACAGACGTTTGCATTGA
GATGGGAATCTCAGCTTCTTTTGGAACTAAGTAACGCGCTCAGGAAGCTA
ATTGCAAGAATGACCGTTTCTATTGCAGCGCAAAACGGTGCTATGATGGT
TTTGCCCGCTCTTGCGGGGGCTGTAGCCTTACCAATTTCTATAATCGGTG
CCCTGCGAACATTGATTGGTAATATATGGGCAAGGGCAATCTCACACGGT
GTTGAATGTGGATATATGCTCGCAGCAGAACTTGCATCGAGGTCATTCGG
GAATCGGCCTATCGTGCTTGCAGGTTTCTCGGTGGGAGCTCTGGTAGTGT
TCAGTTGTTTGCAGGAGCTCGCGCGTCGCAAACTCGTTGGTATTGTGCAT
GATGTGTATCTTGTCGGTGCTCCTTGTACCGCAGATATTGCAGCGTGGCG
AGATGTCAGATCGGTTGTGTCAGGAAGGCTGGTGAATGCCTACGATCCGC
GTGACTGGTACTTGGAATTGTATCACAGAGGAACAAATTTGGGCTCTGTA
GCTGGAAACAAACCCGTGAGAGATAAGGAAGGAATCGCTAACGTTGAAAA
CGTGTGCCTAGTTCATGAACAAGTAGCTAACCATATGGACTACGCGAAGC
GAGCGCAGCAAATACTGGTAGATCTCGGGGTTGCAGATCCAGAAGGCAGG
AGCCCATGGTCAAAGGACTTGCAAGTACGAAACAAAGGATCTGAGTTCGA
TCGTACCGAAGAACCAACTTCCGAACATAGCTTCGTTTCAGAAAGCGGTT
CTATAGCCTTCGAAGAAGAAGAAGTCGTGCTGTTCAAAGCAAAAAAGCGA
GGGAAGCTTCGTAAAAAGGGAAGCGCTAGTAGTAATAGCTGA

Coding sequence (CDS) from alignment at tig00000844_pilon:138578..140869-

>Ggra1457.t1 ID=Ggra1457.t1|Name=Ggra1457.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2292bp|location=Sequence derived from alignment at tig00000844_pilon:138578..140869- (Gracilaria gracilis GNS1m male)
ATGAGCAGTGCAACCGGTTTGGAAGCTTCCACAACATCGCCTACCGCTTC
TCTTCAGGGTCACGAACTAGGCTTTGAGCCAGCTGGCCCGGGTCAGAACC
TCCCCGCAGCCGGTATTCTTGCTGCTTGTGCTTCATCGCTTGCTCCCGAT
CAGGTATGGCTTCGAGCCTATCTAACGAGAGCGCTTCTCGCTTTTTCGCT
ACCAAATGGCGCTCGTGACGGCCTCATTGAGCAGGCTTTAGAAATCGCCT
CATCTCGAAAGCCAATACTGCGCGCTGTAGAAGTTGCAGATGCGTATCTT
ACTGCCTCCTCGTTCGGCCAGTCACAAGCTATCCAACTCATCTCCGCAGT
TCTTGAGGCTGATGTAATAAATTCTACGACTTACGATGCACGAGCAAGAG
AAGTGTTGATGCGTTACATCTCAGCGCTGAGTCTTCCCCCACGCATCCTG
TATGCTGCAGAGCACCAACTCGCAGAACTTGTATTTGCTTTGGCTGAGAA
CGCGACAGTGAATGGGGAAAACGTCGAGTCTGTCGGGGAAGACTCTGCTC
ATGCGCGACGCAGAGCAAATATAAAGTGGCTTAAGGTTGGTGCTGCAGGT
TTATTTGGGGGTCTTGCCCTTGGTCTTAGTGGTGGGTTGATTGCTCCAGC
GCTGCTGCCGGCTCTGGGCACCGTTGGTCTGGCTAGTGCAACCGCTCCAT
TAGCGGCACTCGGTGGAGGTGGTGCTGTCGCCGTTGGAAGTCTTTTCGGA
GCTGCAGGTGCTGGTGTCGGGGCCGCAGCAATGGCAAGTCGAACAGGAGA
TGTAGAGGAGTTTTCGTTTGAGCGATGTACACCCTTGCATGACAATGGTT
CCCAAGCTTACGATACGGCTCGCATAACGCCCACGGAGAACATTCACGAG
GCGTTGGTTCCACTTTCTCATGAAACGAAAGTCCTTGGCGGACTCTTGGT
TTGGGAAATACTAACCTCGCAGGAGTTTGATATGGTCGTTCCTGCTCGAG
TTGCGTTTGGGGTTCAAATCCGAGACATTGTGCAGGGAGGAAACGGGCCA
GTTTCCCAATGGCTTCTTCCGGAGCAGTTCATGGACGTAGGTGGCCTTGA
CAGGAATGGGAAGGGTAAACGTCGACGAACCACAGGAGCTATCACAATAA
CTGAGAACAAAATGTATCTACTTCGCTTTCGATTGATGCCGGGATCTCTC
ACTGTCAATGTTTCTTATCGAGTTGCCTTTGTACCGCCTGGGAAGGAGCC
TCCTGTATGGATTATGGGCGAAAACGAAGAACATGCAACTGAGCGTGAGA
AAGGCAAAGCGAGGTCTCTGTCTATGGCGATCCTTGTCCCAGGACTACTT
AGCGCTGCTGAAAACAGCGCATATCCTGGTATGTGTGCCGACCAGTTTCA
CACAACAACCTCGGCATTGGCAAAGATTGGGATACAGACGTTTGCATTGA
GATGGGAATCTCAGCTTCTTTTGGAACTAAGTAACGCGCTCAGGAAGCTA
ATTGCAAGAATGACCGTTTCTATTGCAGCGCAAAACGGTGCTATGATGGT
TTTGCCCGCTCTTGCGGGGGCTGTAGCCTTACCAATTTCTATAATCGGTG
CCCTGCGAACATTGATTGGTAATATATGGGCAAGGGCAATCTCACACGGT
GTTGAATGTGGATATATGCTCGCAGCAGAACTTGCATCGAGGTCATTCGG
GAATCGGCCTATCGTGCTTGCAGGTTTCTCGGTGGGAGCTCTGGTAGTGT
TCAGTTGTTTGCAGGAGCTCGCGCGTCGCAAACTCGTTGGTATTGTGCAT
GATGTGTATCTTGTCGGTGCTCCTTGTACCGCAGATATTGCAGCGTGGCG
AGATGTCAGATCGGTTGTGTCAGGAAGGCTGGTGAATGCCTACGATCCGC
GTGACTGGTACTTGGAATTGTATCACAGAGGAACAAATTTGGGCTCTGTA
GCTGGAAACAAACCCGTGAGAGATAAGGAAGGAATCGCTAACGTTGAAAA
CGTGTGCCTAGTTCATGAACAAGTAGCTAACCATATGGACTACGCGAAGC
GAGCGCAGCAAATACTGGTAGATCTCGGGGTTGCAGATCCAGAAGGCAGG
AGCCCATGGTCAAAGGACTTGCAAGTACGAAACAAAGGATCTGAGTTCGA
TCGTACCGAAGAACCAACTTCCGAACATAGCTTCGTTTCAGAAAGCGGTT
CTATAGCCTTCGAAGAAGAAGAAGTCGTGCTGTTCAAAGCAAAAAAGCGA
GGGAAGCTTCGTAAAAAGGGAAGCGCTAGTAGTAATAGCTGA