Ggra1456.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1456.t1
Unique Name	Ggra1456.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	419

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:136004..137260 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28532.XP_010527343.1
PFAMs	DUF563
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00005,RC00059
KEGG ko	ko:K18134
KEGG Reaction	R09304,R09676
KEGG Pathway	ko00514,map00514
Evalue	0.000331
EggNOG OGs	KOG4698@1\|root,KOG4698@2759\|Eukaryota,37R1Y@33090\|Viridiplantae,3G8G3@35493\|Streptophyta,3HZT3@3699\|Brassicales
EC	2.4.1.255
Description	Protein of unknown function (DUF563)
COG category	L
CAZy	GT41
BRITE	ko00000,ko00001,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1456	Ggra1456	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 136004..137260 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1456.t1.stop1	Ggra1456.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 136004..136006 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1456.t1.CDS1	Ggra1456.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 136004..137260 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1456.t1.exon1	Ggra1456.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 136004..137260 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1456.t1.start1	Ggra1456.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 137258..137260 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1456.t1	Ggra1456.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 136004..137260 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:136004..137260-
coding sequence from alignment at tig00000844_pilon:136004..137260-

mRNA sequence

>Ggra1456.t1 ID=Ggra1456.t1|Name=Ggra1456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=419bp
MSFVLGNDERASAYVSRTDGSKSKVNLNYVYEDMDVIGSNLPRGKRELLA
YDITPYIFMIEMFSRSRSSSEFTLHCLSSNPGSCGQHEQDSIENSSLNPM
LLIDARISNSKEYHWPKSLLRLIRNSVMGRLKILDMKDLYGWKVRSTASC
FRSILSTNVQTGDMSPKTFAGTNRFFSLNGLVRNSTGRVQNSLTPCICKV
LLLNRHGKRFIVGGDTLTRAITLYGTKVASIDPTVRIEAEEVFFENSSFH
EQVSIIQESSIVVASHGDANSNFMFLKPDSYVFELVPYGYKSDTFRNISV
AYGARYEQITSQADNEVFEACVQHYNSNGGVSLTQYLRNWEKDARMYLNE
TIQKKRNVWSDFEIPEDEGQGTSTSLRNLKECASYQRLSVDVKDLARKVA
LAAIRQCRVQGDLSLLDQ*

spliced messenger RNA

>Ggra1456.t1 ID=Ggra1456.t1|Name=Ggra1456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1257bp|location=Sequence derived from alignment at tig00000844_pilon:136004..137260- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTTGTGTTAGGAAATGATGAGAGAGCTTCCGCGTATGTTTCAAG
AACCGACGGAAGCAAATCCAAAGTTAATTTGAATTATGTCTATGAAGACA
TGGACGTCATTGGGTCTAACCTACCACGCGGTAAACGTGAGTTGCTGGCC
TACGATATCACACCATATATATTTATGATAGAGATGTTTTCAAGGTCGAG
GAGCTCTTCGGAATTCACTCTTCACTGCTTGTCAAGTAATCCTGGCAGTT
GTGGACAGCACGAACAAGACTCTATCGAGAATTCTTCTCTCAACCCAATG
CTTCTAATCGACGCTCGTATATCAAATTCGAAGGAGTATCACTGGCCCAA
GAGTCTCCTTCGACTGATAAGGAACAGTGTTATGGGCAGATTAAAGATTC
TAGACATGAAAGACCTTTACGGGTGGAAGGTGCGTTCAACCGCTTCCTGT
TTCCGTTCAATACTCTCCACCAATGTACAAACAGGAGATATGTCTCCGAA
AACCTTTGCTGGAACCAATCGTTTCTTCTCTCTGAATGGCTTGGTGAGGA
ATTCTACCGGTCGAGTTCAGAATTCTCTCACGCCATGTATTTGCAAGGTT
TTGCTACTAAATCGCCACGGGAAAAGATTTATAGTAGGAGGAGACACGCT
GACGCGAGCTATCACTCTCTATGGTACGAAAGTCGCAAGCATTGATCCCA
CCGTGCGTATTGAAGCCGAAGAAGTATTCTTCGAAAACTCCTCCTTTCAC
GAACAGGTCTCAATCATACAGGAATCCAGTATTGTTGTAGCATCTCACGG
GGATGCGAATTCCAATTTCATGTTCCTTAAACCTGACTCCTATGTCTTTG
AGCTTGTACCTTATGGATACAAGTCAGATACATTTCGAAACATCTCAGTT
GCTTATGGTGCTCGATACGAGCAAATAACATCTCAGGCCGACAATGAGGT
GTTCGAAGCGTGTGTGCAACACTACAACTCAAACGGTGGTGTTTCTCTAA
CTCAATACCTGAGAAATTGGGAGAAGGATGCGAGGATGTATTTGAATGAG
ACGATACAGAAGAAGAGAAACGTTTGGTCTGACTTCGAAATACCGGAAGA
CGAAGGCCAAGGGACCTCTACTTCCTTGAGGAACCTTAAGGAATGCGCTT
CCTATCAGCGTTTAAGTGTGGACGTCAAAGACTTGGCAAGAAAGGTAGCG
TTGGCTGCGATCCGGCAATGTAGAGTTCAAGGAGATCTCTCTCTCCTCGA
TCAGTGA

protein sequence of Ggra1456.t1

>Ggra1456.t1 ID=Ggra1456.t1|Name=Ggra1456.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=419bp
MSFVLGNDERASAYVSRTDGSKSKVNLNYVYEDMDVIGSNLPRGKRELLA
YDITPYIFMIEMFSRSRSSSEFTLHCLSSNPGSCGQHEQDSIENSSLNPM
LLIDARISNSKEYHWPKSLLRLIRNSVMGRLKILDMKDLYGWKVRSTASC
FRSILSTNVQTGDMSPKTFAGTNRFFSLNGLVRNSTGRVQNSLTPCICKV
LLLNRHGKRFIVGGDTLTRAITLYGTKVASIDPTVRIEAEEVFFENSSFH
EQVSIIQESSIVVASHGDANSNFMFLKPDSYVFELVPYGYKSDTFRNISV
AYGARYEQITSQADNEVFEACVQHYNSNGGVSLTQYLRNWEKDARMYLNE
TIQKKRNVWSDFEIPEDEGQGTSTSLRNLKECASYQRLSVDVKDLARKVA
LAAIRQCRVQGDLSLLDQ*

mRNA from alignment at tig00000844_pilon:136004..137260-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1456.t1 ID=Ggra1456.t1|Name=Ggra1456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1257bp|location=Sequence derived from alignment at tig00000844_pilon:136004..137260- (Gracilaria gracilis GNS1m male)
ATGTCGTTTGTGTTAGGAAATGATGAGAGAGCTTCCGCGTATGTTTCAAG
AACCGACGGAAGCAAATCCAAAGTTAATTTGAATTATGTCTATGAAGACA
TGGACGTCATTGGGTCTAACCTACCACGCGGTAAACGTGAGTTGCTGGCC
TACGATATCACACCATATATATTTATGATAGAGATGTTTTCAAGGTCGAG
GAGCTCTTCGGAATTCACTCTTCACTGCTTGTCAAGTAATCCTGGCAGTT
GTGGACAGCACGAACAAGACTCTATCGAGAATTCTTCTCTCAACCCAATG
CTTCTAATCGACGCTCGTATATCAAATTCGAAGGAGTATCACTGGCCCAA
GAGTCTCCTTCGACTGATAAGGAACAGTGTTATGGGCAGATTAAAGATTC
TAGACATGAAAGACCTTTACGGGTGGAAGGTGCGTTCAACCGCTTCCTGT
TTCCGTTCAATACTCTCCACCAATGTACAAACAGGAGATATGTCTCCGAA
AACCTTTGCTGGAACCAATCGTTTCTTCTCTCTGAATGGCTTGGTGAGGA
ATTCTACCGGTCGAGTTCAGAATTCTCTCACGCCATGTATTTGCAAGGTT
TTGCTACTAAATCGCCACGGGAAAAGATTTATAGTAGGAGGAGACACGCT
GACGCGAGCTATCACTCTCTATGGTACGAAAGTCGCAAGCATTGATCCCA
CCGTGCGTATTGAAGCCGAAGAAGTATTCTTCGAAAACTCCTCCTTTCAC
GAACAGGTCTCAATCATACAGGAATCCAGTATTGTTGTAGCATCTCACGG
GGATGCGAATTCCAATTTCATGTTCCTTAAACCTGACTCCTATGTCTTTG
AGCTTGTACCTTATGGATACAAGTCAGATACATTTCGAAACATCTCAGTT
GCTTATGGTGCTCGATACGAGCAAATAACATCTCAGGCCGACAATGAGGT
GTTCGAAGCGTGTGTGCAACACTACAACTCAAACGGTGGTGTTTCTCTAA
CTCAATACCTGAGAAATTGGGAGAAGGATGCGAGGATGTATTTGAATGAG
ACGATACAGAAGAAGAGAAACGTTTGGTCTGACTTCGAAATACCGGAAGA
CGAAGGCCAAGGGACCTCTACTTCCTTGAGGAACCTTAAGGAATGCGCTT
CCTATCAGCGTTTAAGTGTGGACGTCAAAGACTTGGCAAGAAAGGTAGCG
TTGGCTGCGATCCGGCAATGTAGAGTTCAAGGAGATCTCTCTCTCCTCGA
TCAGTGA

Coding sequence (CDS) from alignment at tig00000844_pilon:136004..137260-

>Ggra1456.t1 ID=Ggra1456.t1|Name=Ggra1456.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1257bp|location=Sequence derived from alignment at tig00000844_pilon:136004..137260- (Gracilaria gracilis GNS1m male)
ATGTCGTTTGTGTTAGGAAATGATGAGAGAGCTTCCGCGTATGTTTCAAG
AACCGACGGAAGCAAATCCAAAGTTAATTTGAATTATGTCTATGAAGACA
TGGACGTCATTGGGTCTAACCTACCACGCGGTAAACGTGAGTTGCTGGCC
TACGATATCACACCATATATATTTATGATAGAGATGTTTTCAAGGTCGAG
GAGCTCTTCGGAATTCACTCTTCACTGCTTGTCAAGTAATCCTGGCAGTT
GTGGACAGCACGAACAAGACTCTATCGAGAATTCTTCTCTCAACCCAATG
CTTCTAATCGACGCTCGTATATCAAATTCGAAGGAGTATCACTGGCCCAA
GAGTCTCCTTCGACTGATAAGGAACAGTGTTATGGGCAGATTAAAGATTC
TAGACATGAAAGACCTTTACGGGTGGAAGGTGCGTTCAACCGCTTCCTGT
TTCCGTTCAATACTCTCCACCAATGTACAAACAGGAGATATGTCTCCGAA
AACCTTTGCTGGAACCAATCGTTTCTTCTCTCTGAATGGCTTGGTGAGGA
ATTCTACCGGTCGAGTTCAGAATTCTCTCACGCCATGTATTTGCAAGGTT
TTGCTACTAAATCGCCACGGGAAAAGATTTATAGTAGGAGGAGACACGCT
GACGCGAGCTATCACTCTCTATGGTACGAAAGTCGCAAGCATTGATCCCA
CCGTGCGTATTGAAGCCGAAGAAGTATTCTTCGAAAACTCCTCCTTTCAC
GAACAGGTCTCAATCATACAGGAATCCAGTATTGTTGTAGCATCTCACGG
GGATGCGAATTCCAATTTCATGTTCCTTAAACCTGACTCCTATGTCTTTG
AGCTTGTACCTTATGGATACAAGTCAGATACATTTCGAAACATCTCAGTT
GCTTATGGTGCTCGATACGAGCAAATAACATCTCAGGCCGACAATGAGGT
GTTCGAAGCGTGTGTGCAACACTACAACTCAAACGGTGGTGTTTCTCTAA
CTCAATACCTGAGAAATTGGGAGAAGGATGCGAGGATGTATTTGAATGAG
ACGATACAGAAGAAGAGAAACGTTTGGTCTGACTTCGAAATACCGGAAGA
CGAAGGCCAAGGGACCTCTACTTCCTTGAGGAACCTTAAGGAATGCGCTT
CCTATCAGCGTTTAAGTGTGGACGTCAAAGACTTGGCAAGAAAGGTAGCG
TTGGCTGCGATCCGGCAATGTAGAGTTCAAGGAGATCTCTCTCTCCTCGA
TCAGTGA