Ggra1455.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1455.t1
Unique Name	Ggra1455.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	291

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:134473..135345 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706170.1
PFAMs	RRM_1
Max annot lvl	2759\|Eukaryota
Evalue	2.83e-10
EggNOG OGs	2E4NG@1\|root,2SBHW@2759\|Eukaryota
Description	RNA recognition motif
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1455	Ggra1455	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 134473..135345 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1455.t1.start1	Ggra1455.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 134473..134475 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1455.t1.CDS1	Ggra1455.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 134473..135345 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1455.t1.exon1	Ggra1455.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 134473..135345 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1455.t1.stop1	Ggra1455.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 135343..135345 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1455.t1	Ggra1455.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 134473..135345 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:134473..135345+
coding sequence from alignment at tig00000844_pilon:134473..135345+

mRNA sequence

>Ggra1455.t1 ID=Ggra1455.t1|Name=Ggra1455.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=291bp
MTSPETPFPPPEALPRAVLVRNISPLATQAAIEDFFSFVCPIEILRLRSV
SSGNGKDTSQEAIVIFTESRAKADAIVMDKSTIVDQPVAISAVPEDYDFN
ALPAPNQEPNGILDGFSGFGDLFSGVSSAVATEMQKAGKLIDDATETGVL
KSAKEQVAAASQRTRNFATDIDGKWQVTSNVRTFAESSKANAAFVASTVA
SQTKNVAQRVDNSLHLSEQTERLAESARQNSALNNSFMAIRGGFMNLISQ
TGLSQEEASQLPPVGSNGTSTGATSQPPAGDTPPTTSNPQ*

spliced messenger RNA

>Ggra1455.t1 ID=Ggra1455.t1|Name=Ggra1455.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000844_pilon:134473..135345+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCTCCCGAAACGCCTTTCCCGCCTCCAGAAGCATTGCCTCGCGC
CGTGCTGGTGCGCAACATTTCGCCGTTGGCGACCCAGGCTGCAATTGAAG
ACTTTTTCTCATTTGTATGCCCAATTGAAATATTACGCTTACGTTCTGTG
AGTTCTGGGAACGGGAAAGACACAAGTCAAGAGGCTATCGTTATTTTTAC
CGAGTCAAGGGCTAAGGCCGACGCAATTGTTATGGACAAATCTACCATTG
TTGATCAGCCAGTGGCAATTTCCGCGGTGCCTGAGGATTACGATTTCAAT
GCACTTCCTGCGCCTAATCAAGAGCCAAACGGGATTCTCGATGGCTTTTC
AGGGTTTGGCGACCTTTTCAGTGGCGTAAGTTCTGCCGTTGCAACGGAGA
TGCAGAAAGCGGGTAAGCTGATTGACGATGCCACGGAAACTGGTGTGCTG
AAATCTGCTAAGGAACAAGTCGCCGCTGCTAGCCAACGTACACGCAACTT
CGCTACAGATATTGATGGAAAATGGCAAGTTACCAGTAACGTTCGTACCT
TTGCGGAAAGCAGCAAGGCCAATGCTGCCTTTGTCGCAAGCACTGTCGCA
TCTCAAACGAAGAATGTAGCCCAGCGCGTCGATAACAGCTTACACCTTTC
AGAACAAACTGAAAGACTTGCGGAAAGTGCTAGGCAAAATTCTGCGCTTA
ACAACAGCTTCATGGCTATAAGAGGTGGGTTCATGAACCTCATTTCCCAA
ACCGGGCTAAGTCAGGAAGAGGCTTCGCAACTTCCACCAGTTGGGTCGAA
TGGGACATCGACAGGGGCAACATCACAACCCCCTGCTGGGGACACCCCTC
CCACCACAAGTAACCCACAATAA

protein sequence of Ggra1455.t1

>Ggra1455.t1 ID=Ggra1455.t1|Name=Ggra1455.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=291bp
MTSPETPFPPPEALPRAVLVRNISPLATQAAIEDFFSFVCPIEILRLRSV
SSGNGKDTSQEAIVIFTESRAKADAIVMDKSTIVDQPVAISAVPEDYDFN
ALPAPNQEPNGILDGFSGFGDLFSGVSSAVATEMQKAGKLIDDATETGVL
KSAKEQVAAASQRTRNFATDIDGKWQVTSNVRTFAESSKANAAFVASTVA
SQTKNVAQRVDNSLHLSEQTERLAESARQNSALNNSFMAIRGGFMNLISQ
TGLSQEEASQLPPVGSNGTSTGATSQPPAGDTPPTTSNPQ*

mRNA from alignment at tig00000844_pilon:134473..135345+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1455.t1 ID=Ggra1455.t1|Name=Ggra1455.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000844_pilon:134473..135345+ (Gracilaria gracilis GNS1m male)
ATGACATCTCCCGAAACGCCTTTCCCGCCTCCAGAAGCATTGCCTCGCGC
CGTGCTGGTGCGCAACATTTCGCCGTTGGCGACCCAGGCTGCAATTGAAG
ACTTTTTCTCATTTGTATGCCCAATTGAAATATTACGCTTACGTTCTGTG
AGTTCTGGGAACGGGAAAGACACAAGTCAAGAGGCTATCGTTATTTTTAC
CGAGTCAAGGGCTAAGGCCGACGCAATTGTTATGGACAAATCTACCATTG
TTGATCAGCCAGTGGCAATTTCCGCGGTGCCTGAGGATTACGATTTCAAT
GCACTTCCTGCGCCTAATCAAGAGCCAAACGGGATTCTCGATGGCTTTTC
AGGGTTTGGCGACCTTTTCAGTGGCGTAAGTTCTGCCGTTGCAACGGAGA
TGCAGAAAGCGGGTAAGCTGATTGACGATGCCACGGAAACTGGTGTGCTG
AAATCTGCTAAGGAACAAGTCGCCGCTGCTAGCCAACGTACACGCAACTT
CGCTACAGATATTGATGGAAAATGGCAAGTTACCAGTAACGTTCGTACCT
TTGCGGAAAGCAGCAAGGCCAATGCTGCCTTTGTCGCAAGCACTGTCGCA
TCTCAAACGAAGAATGTAGCCCAGCGCGTCGATAACAGCTTACACCTTTC
AGAACAAACTGAAAGACTTGCGGAAAGTGCTAGGCAAAATTCTGCGCTTA
ACAACAGCTTCATGGCTATAAGAGGTGGGTTCATGAACCTCATTTCCCAA
ACCGGGCTAAGTCAGGAAGAGGCTTCGCAACTTCCACCAGTTGGGTCGAA
TGGGACATCGACAGGGGCAACATCACAACCCCCTGCTGGGGACACCCCTC
CCACCACAAGTAACCCACAATAA

Coding sequence (CDS) from alignment at tig00000844_pilon:134473..135345+

>Ggra1455.t1 ID=Ggra1455.t1|Name=Ggra1455.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00000844_pilon:134473..135345+ (Gracilaria gracilis GNS1m male)
ATGACATCTCCCGAAACGCCTTTCCCGCCTCCAGAAGCATTGCCTCGCGC
CGTGCTGGTGCGCAACATTTCGCCGTTGGCGACCCAGGCTGCAATTGAAG
ACTTTTTCTCATTTGTATGCCCAATTGAAATATTACGCTTACGTTCTGTG
AGTTCTGGGAACGGGAAAGACACAAGTCAAGAGGCTATCGTTATTTTTAC
CGAGTCAAGGGCTAAGGCCGACGCAATTGTTATGGACAAATCTACCATTG
TTGATCAGCCAGTGGCAATTTCCGCGGTGCCTGAGGATTACGATTTCAAT
GCACTTCCTGCGCCTAATCAAGAGCCAAACGGGATTCTCGATGGCTTTTC
AGGGTTTGGCGACCTTTTCAGTGGCGTAAGTTCTGCCGTTGCAACGGAGA
TGCAGAAAGCGGGTAAGCTGATTGACGATGCCACGGAAACTGGTGTGCTG
AAATCTGCTAAGGAACAAGTCGCCGCTGCTAGCCAACGTACACGCAACTT
CGCTACAGATATTGATGGAAAATGGCAAGTTACCAGTAACGTTCGTACCT
TTGCGGAAAGCAGCAAGGCCAATGCTGCCTTTGTCGCAAGCACTGTCGCA
TCTCAAACGAAGAATGTAGCCCAGCGCGTCGATAACAGCTTACACCTTTC
AGAACAAACTGAAAGACTTGCGGAAAGTGCTAGGCAAAATTCTGCGCTTA
ACAACAGCTTCATGGCTATAAGAGGTGGGTTCATGAACCTCATTTCCCAA
ACCGGGCTAAGTCAGGAAGAGGCTTCGCAACTTCCACCAGTTGGGTCGAA
TGGGACATCGACAGGGGCAACATCACAACCCCCTGCTGGGGACACCCCTC
CCACCACAAGTAACCCACAATAA