Ggra1453.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1453.t1
Unique NameGgra1453.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:131589..132239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703056.1
Preferred nameYAF9
PFAMsYEATS
Max annot lvl2759|Eukaryota
KEGG koko:K11341
GOsGO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009909,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0031056,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034728,GO:0035065,GO:0035267,GO:0036211,GO:0040029,GO:0040034,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043981,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048506,GO:0048509,GO:0048510,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090239,GO:0090304,GO:0097346,GO:1901360,GO:1901564,GO:1901983,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:2000026,GO:2000028,GO:2000112,GO:2000113,GO:2000241,GO:2000756,GO:2001141
Evalue3.9e-53
EggNOG OGsCOG5033@1|root,KOG3149@2759|Eukaryota
Descriptionchromatin organization
COG categoryK
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1453Ggra1453Gracilaria gracilis GNS1m malegenetig00000844_pilon 131589..132239 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1453.t1.stop1Ggra1453.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 131589..131591 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1453.t1.CDS1Ggra1453.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 131589..132239 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1453.t1.exon1Ggra1453.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 131589..132239 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1453.t1.start1Ggra1453.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 132237..132239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1453.t1Ggra1453.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 131589..132239 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1453.t1 ID=Ggra1453.t1|Name=Ggra1453.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MKRVKGVNLHIPVVHGSFAKHLGDKGTESRSHEWTVYLRPLQPADLSHFI
RHVEFVLHESFEPQVRRVTEMPYEVQEYGWGEFEVVIRVFFQDPSEKPVE
FFHPLRLFENVGEPSPDPVISEYYDEIVFQDPPETLHGLLKTIPHGPNLR
IKQPSYPIPAYFKDFSGAESADLRKLEHARRKLREETMKRQTRYEELEEE
RAELIRQISAKGGRIS*
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spliced messenger RNA

>Ggra1453.t1 ID=Ggra1453.t1|Name=Ggra1453.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000844_pilon:131589..132239- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGCGTCAAGGGTGTGAACCTTCACATCCCCGTTGTGCATGGCTC
CTTTGCGAAACACCTTGGAGACAAGGGTACAGAGTCAAGAAGCCATGAGT
GGACTGTCTATCTGAGACCTTTGCAACCAGCAGATCTTTCACATTTTATT
CGCCATGTGGAATTCGTTCTCCACGAGTCCTTCGAACCTCAGGTCCGTCG
AGTGACGGAGATGCCGTATGAAGTTCAAGAGTACGGGTGGGGAGAGTTCG
AGGTTGTCATTCGCGTGTTCTTCCAAGACCCTTCAGAGAAGCCTGTGGAG
TTCTTTCACCCACTTCGCCTTTTTGAAAACGTGGGAGAACCTTCTCCAGA
TCCAGTTATCTCAGAGTATTACGATGAAATCGTGTTTCAGGACCCCCCGG
AAACACTACACGGATTGCTCAAAACAATACCACATGGACCAAACTTGAGA
ATCAAACAGCCTTCATATCCCATACCAGCTTATTTTAAGGACTTCAGCGG
AGCAGAAAGCGCTGATCTGCGAAAGCTAGAGCACGCAAGGCGCAAACTAC
GCGAGGAAACTATGAAGCGCCAGACGCGTTACGAAGAACTTGAAGAAGAA
CGAGCAGAACTAATTCGACAAATATCTGCGAAAGGTGGTCGCATTTCATA
G
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protein sequence of Ggra1453.t1

>Ggra1453.t1 ID=Ggra1453.t1|Name=Ggra1453.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MKRVKGVNLHIPVVHGSFAKHLGDKGTESRSHEWTVYLRPLQPADLSHFI
RHVEFVLHESFEPQVRRVTEMPYEVQEYGWGEFEVVIRVFFQDPSEKPVE
FFHPLRLFENVGEPSPDPVISEYYDEIVFQDPPETLHGLLKTIPHGPNLR
IKQPSYPIPAYFKDFSGAESADLRKLEHARRKLREETMKRQTRYEELEEE
RAELIRQISAKGGRIS*
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mRNA from alignment at tig00000844_pilon:131589..132239-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1453.t1 ID=Ggra1453.t1|Name=Ggra1453.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000844_pilon:131589..132239- (Gracilaria gracilis GNS1m male)
ATGAAGCGCGTCAAGGGTGTGAACCTTCACATCCCCGTTGTGCATGGCTC
CTTTGCGAAACACCTTGGAGACAAGGGTACAGAGTCAAGAAGCCATGAGT
GGACTGTCTATCTGAGACCTTTGCAACCAGCAGATCTTTCACATTTTATT
CGCCATGTGGAATTCGTTCTCCACGAGTCCTTCGAACCTCAGGTCCGTCG
AGTGACGGAGATGCCGTATGAAGTTCAAGAGTACGGGTGGGGAGAGTTCG
AGGTTGTCATTCGCGTGTTCTTCCAAGACCCTTCAGAGAAGCCTGTGGAG
TTCTTTCACCCACTTCGCCTTTTTGAAAACGTGGGAGAACCTTCTCCAGA
TCCAGTTATCTCAGAGTATTACGATGAAATCGTGTTTCAGGACCCCCCGG
AAACACTACACGGATTGCTCAAAACAATACCACATGGACCAAACTTGAGA
ATCAAACAGCCTTCATATCCCATACCAGCTTATTTTAAGGACTTCAGCGG
AGCAGAAAGCGCTGATCTGCGAAAGCTAGAGCACGCAAGGCGCAAACTAC
GCGAGGAAACTATGAAGCGCCAGACGCGTTACGAAGAACTTGAAGAAGAA
CGAGCAGAACTAATTCGACAAATATCTGCGAAAGGTGGTCGCATTTCATA
G
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Coding sequence (CDS) from alignment at tig00000844_pilon:131589..132239-

>Ggra1453.t1 ID=Ggra1453.t1|Name=Ggra1453.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000844_pilon:131589..132239- (Gracilaria gracilis GNS1m male)
ATGAAGCGCGTCAAGGGTGTGAACCTTCACATCCCCGTTGTGCATGGCTC
CTTTGCGAAACACCTTGGAGACAAGGGTACAGAGTCAAGAAGCCATGAGT
GGACTGTCTATCTGAGACCTTTGCAACCAGCAGATCTTTCACATTTTATT
CGCCATGTGGAATTCGTTCTCCACGAGTCCTTCGAACCTCAGGTCCGTCG
AGTGACGGAGATGCCGTATGAAGTTCAAGAGTACGGGTGGGGAGAGTTCG
AGGTTGTCATTCGCGTGTTCTTCCAAGACCCTTCAGAGAAGCCTGTGGAG
TTCTTTCACCCACTTCGCCTTTTTGAAAACGTGGGAGAACCTTCTCCAGA
TCCAGTTATCTCAGAGTATTACGATGAAATCGTGTTTCAGGACCCCCCGG
AAACACTACACGGATTGCTCAAAACAATACCACATGGACCAAACTTGAGA
ATCAAACAGCCTTCATATCCCATACCAGCTTATTTTAAGGACTTCAGCGG
AGCAGAAAGCGCTGATCTGCGAAAGCTAGAGCACGCAAGGCGCAAACTAC
GCGAGGAAACTATGAAGCGCCAGACGCGTTACGAAGAACTTGAAGAAGAA
CGAGCAGAACTAATTCGACAAATATCTGCGAAAGGTGGTCGCATTTCATA
G
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