Ggra1451.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1451.t1
Unique NameGgra1451.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:122210..123712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704017.1
PFAMsSWIB
Max annot lvl2759|Eukaryota
KEGG koko:K11650
KEGG Pathwayko04714,ko05225,map04714,map05225
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003682,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009909,GO:0009987,GO:0010224,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016514,GO:0019219,GO:0019222,GO:0022411,GO:0022622,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031498,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032947,GO:0032984,GO:0032986,GO:0032991,GO:0033554,GO:0034641,GO:0034728,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045815,GO:0045893,GO:0045935,GO:0046483,GO:0048096,GO:0048364,GO:0048518,GO:0048522,GO:0048580,GO:0048731,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0071564,GO:0071565,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097458,GO:0099402,GO:1901360,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1904949,GO:2000024,GO:2000026,GO:2000112,GO:2000241,GO:2001141
Evalue1.99e-78
EggNOG OGsCOG5531@1|root,KOG2570@2759|Eukaryota
Descriptionchromatin disassembly
COG categoryB
BRITEko00000,ko00001,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1451Ggra1451Gracilaria gracilis GNS1m malegenetig00000844_pilon 122210..123712 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1451.t1.stop1Ggra1451.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 122210..122212 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1451.t1.CDS1Ggra1451.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 122210..123712 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1451.t1.exon1Ggra1451.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 122210..123712 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1451.t1.start1Ggra1451.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 123710..123712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1451.t1Ggra1451.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 122210..123712 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1451.t1 ID=Ggra1451.t1|Name=Ggra1451.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp
MEISGGKGGALKSESDVGRAAADFLASASERRKRARASMGPIAEQARKRH
VSSHPSKVNVEAARKSALALSGESPAYKKLMEMEERLDLALMRKQQDIKE
MLKSQFFSEKRVFRLYIFNTYRSQPEAQGVTSEDVASWSLRIQGQLLPKK
DSSRTVNQGNGADSRSAGVPGLTTTPGATGVSPGLPSSPVPGQYQTSEPV
SVLIGPPPKCSDIFSKVIVELDKDLYPENNMIEWKRKDGEPSSNGFEISR
AGSNEFTAKIYLFVDHKPDHFRISWPLSRLIGIKRETKKNIYNSVWQYVK
KNRLQCVDDRTAVRLDPGLKTLLGPVNQTVEVLKLQQLFAIIKSHMGPLE
PIQIEYEVKLNGDVVDNQDCYDIEVNVQDTGLIESARKAGTFGLGLPQST
EYEALSEKHMVALQKIAEHKKRRDFFVGFCSNPVQFINHLILSQTRDLKV
LGGSTGRNPEEERRASFYQQQWVYEAVPRYLLRKAIADTAEETVEGVLKS
*
back to top

spliced messenger RNA

>Ggra1451.t1 ID=Ggra1451.t1|Name=Ggra1451.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000844_pilon:122210..123712- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATTTCCGGAGGGAAAGGAGGTGCTCTCAAATCTGAAAGCGACGT
GGGCCGGGCCGCTGCAGATTTCTTGGCGTCTGCATCTGAACGTCGAAAGA
GAGCTCGTGCCTCAATGGGTCCAATTGCGGAACAAGCTCGGAAGCGCCAT
GTTTCTTCACATCCATCAAAGGTAAATGTTGAGGCTGCCAGGAAGTCTGC
TCTTGCTCTTTCGGGCGAGTCGCCTGCGTACAAAAAGCTAATGGAAATGG
AGGAGCGCCTTGACCTCGCATTGATGCGCAAGCAACAGGATATTAAGGAG
ATGTTGAAGTCGCAATTCTTCTCCGAGAAGCGCGTGTTCAGATTATACAT
ATTCAACACGTACCGGTCGCAGCCAGAAGCTCAAGGGGTTACTTCGGAGG
ACGTTGCGTCTTGGTCTTTGCGAATTCAAGGCCAACTACTACCGAAAAAA
GATTCATCGAGGACAGTCAACCAGGGTAATGGCGCGGACTCCCGGTCAGC
AGGCGTTCCTGGTCTTACGACTACCCCTGGAGCAACTGGAGTGTCACCAG
GACTGCCATCATCACCCGTTCCTGGTCAATATCAAACTTCCGAACCTGTA
AGCGTGTTGATTGGTCCCCCTCCGAAGTGCTCGGACATTTTCAGCAAGGT
CATCGTTGAGCTTGATAAAGATCTATATCCTGAGAACAACATGATAGAGT
GGAAGCGGAAGGACGGTGAACCTTCGTCAAATGGCTTTGAGATTTCGCGA
GCTGGCTCGAACGAATTCACTGCGAAGATCTACCTGTTTGTGGATCACAA
GCCGGATCACTTTCGTATATCATGGCCTCTTTCTCGTCTAATCGGAATAA
AGAGGGAGACGAAGAAAAACATTTACAACAGTGTTTGGCAATACGTGAAG
AAGAACAGGTTGCAATGCGTTGACGACCGCACAGCTGTGCGACTGGATCC
TGGTTTGAAGACCTTGCTTGGACCTGTGAATCAAACTGTAGAGGTTTTGA
AGCTTCAGCAGCTGTTTGCTATCATCAAGAGCCACATGGGACCGTTGGAA
CCCATACAGATTGAGTACGAGGTGAAATTGAATGGAGATGTTGTTGACAA
TCAGGACTGCTACGATATCGAAGTGAATGTTCAGGACACAGGCTTAATTG
AGTCTGCTCGAAAAGCGGGGACATTTGGACTCGGTCTCCCGCAGTCGACG
GAATATGAAGCTCTCAGCGAGAAGCATATGGTTGCACTTCAGAAAATTGC
TGAACATAAGAAACGAAGAGACTTCTTCGTCGGTTTTTGTTCGAATCCTG
TCCAGTTTATAAACCATTTAATTCTGAGCCAAACCAGGGACTTGAAAGTT
CTCGGTGGTAGCACAGGTAGGAATCCCGAGGAAGAACGGAGAGCATCTTT
TTACCAGCAGCAGTGGGTGTATGAGGCGGTTCCCCGATATTTGCTGAGAA
AAGCAATTGCTGACACTGCTGAAGAGACGGTTGAAGGCGTTCTCAAGAGC
TAG
back to top

protein sequence of Ggra1451.t1

>Ggra1451.t1 ID=Ggra1451.t1|Name=Ggra1451.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=501bp
MEISGGKGGALKSESDVGRAAADFLASASERRKRARASMGPIAEQARKRH
VSSHPSKVNVEAARKSALALSGESPAYKKLMEMEERLDLALMRKQQDIKE
MLKSQFFSEKRVFRLYIFNTYRSQPEAQGVTSEDVASWSLRIQGQLLPKK
DSSRTVNQGNGADSRSAGVPGLTTTPGATGVSPGLPSSPVPGQYQTSEPV
SVLIGPPPKCSDIFSKVIVELDKDLYPENNMIEWKRKDGEPSSNGFEISR
AGSNEFTAKIYLFVDHKPDHFRISWPLSRLIGIKRETKKNIYNSVWQYVK
KNRLQCVDDRTAVRLDPGLKTLLGPVNQTVEVLKLQQLFAIIKSHMGPLE
PIQIEYEVKLNGDVVDNQDCYDIEVNVQDTGLIESARKAGTFGLGLPQST
EYEALSEKHMVALQKIAEHKKRRDFFVGFCSNPVQFINHLILSQTRDLKV
LGGSTGRNPEEERRASFYQQQWVYEAVPRYLLRKAIADTAEETVEGVLKS
*
back to top

mRNA from alignment at tig00000844_pilon:122210..123712-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1451.t1 ID=Ggra1451.t1|Name=Ggra1451.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000844_pilon:122210..123712- (Gracilaria gracilis GNS1m male)
ATGGAAATTTCCGGAGGGAAAGGAGGTGCTCTCAAATCTGAAAGCGACGT
GGGCCGGGCCGCTGCAGATTTCTTGGCGTCTGCATCTGAACGTCGAAAGA
GAGCTCGTGCCTCAATGGGTCCAATTGCGGAACAAGCTCGGAAGCGCCAT
GTTTCTTCACATCCATCAAAGGTAAATGTTGAGGCTGCCAGGAAGTCTGC
TCTTGCTCTTTCGGGCGAGTCGCCTGCGTACAAAAAGCTAATGGAAATGG
AGGAGCGCCTTGACCTCGCATTGATGCGCAAGCAACAGGATATTAAGGAG
ATGTTGAAGTCGCAATTCTTCTCCGAGAAGCGCGTGTTCAGATTATACAT
ATTCAACACGTACCGGTCGCAGCCAGAAGCTCAAGGGGTTACTTCGGAGG
ACGTTGCGTCTTGGTCTTTGCGAATTCAAGGCCAACTACTACCGAAAAAA
GATTCATCGAGGACAGTCAACCAGGGTAATGGCGCGGACTCCCGGTCAGC
AGGCGTTCCTGGTCTTACGACTACCCCTGGAGCAACTGGAGTGTCACCAG
GACTGCCATCATCACCCGTTCCTGGTCAATATCAAACTTCCGAACCTGTA
AGCGTGTTGATTGGTCCCCCTCCGAAGTGCTCGGACATTTTCAGCAAGGT
CATCGTTGAGCTTGATAAAGATCTATATCCTGAGAACAACATGATAGAGT
GGAAGCGGAAGGACGGTGAACCTTCGTCAAATGGCTTTGAGATTTCGCGA
GCTGGCTCGAACGAATTCACTGCGAAGATCTACCTGTTTGTGGATCACAA
GCCGGATCACTTTCGTATATCATGGCCTCTTTCTCGTCTAATCGGAATAA
AGAGGGAGACGAAGAAAAACATTTACAACAGTGTTTGGCAATACGTGAAG
AAGAACAGGTTGCAATGCGTTGACGACCGCACAGCTGTGCGACTGGATCC
TGGTTTGAAGACCTTGCTTGGACCTGTGAATCAAACTGTAGAGGTTTTGA
AGCTTCAGCAGCTGTTTGCTATCATCAAGAGCCACATGGGACCGTTGGAA
CCCATACAGATTGAGTACGAGGTGAAATTGAATGGAGATGTTGTTGACAA
TCAGGACTGCTACGATATCGAAGTGAATGTTCAGGACACAGGCTTAATTG
AGTCTGCTCGAAAAGCGGGGACATTTGGACTCGGTCTCCCGCAGTCGACG
GAATATGAAGCTCTCAGCGAGAAGCATATGGTTGCACTTCAGAAAATTGC
TGAACATAAGAAACGAAGAGACTTCTTCGTCGGTTTTTGTTCGAATCCTG
TCCAGTTTATAAACCATTTAATTCTGAGCCAAACCAGGGACTTGAAAGTT
CTCGGTGGTAGCACAGGTAGGAATCCCGAGGAAGAACGGAGAGCATCTTT
TTACCAGCAGCAGTGGGTGTATGAGGCGGTTCCCCGATATTTGCTGAGAA
AAGCAATTGCTGACACTGCTGAAGAGACGGTTGAAGGCGTTCTCAAGAGC
TAG
back to top

Coding sequence (CDS) from alignment at tig00000844_pilon:122210..123712-

>Ggra1451.t1 ID=Ggra1451.t1|Name=Ggra1451.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1503bp|location=Sequence derived from alignment at tig00000844_pilon:122210..123712- (Gracilaria gracilis GNS1m male)
ATGGAAATTTCCGGAGGGAAAGGAGGTGCTCTCAAATCTGAAAGCGACGT
GGGCCGGGCCGCTGCAGATTTCTTGGCGTCTGCATCTGAACGTCGAAAGA
GAGCTCGTGCCTCAATGGGTCCAATTGCGGAACAAGCTCGGAAGCGCCAT
GTTTCTTCACATCCATCAAAGGTAAATGTTGAGGCTGCCAGGAAGTCTGC
TCTTGCTCTTTCGGGCGAGTCGCCTGCGTACAAAAAGCTAATGGAAATGG
AGGAGCGCCTTGACCTCGCATTGATGCGCAAGCAACAGGATATTAAGGAG
ATGTTGAAGTCGCAATTCTTCTCCGAGAAGCGCGTGTTCAGATTATACAT
ATTCAACACGTACCGGTCGCAGCCAGAAGCTCAAGGGGTTACTTCGGAGG
ACGTTGCGTCTTGGTCTTTGCGAATTCAAGGCCAACTACTACCGAAAAAA
GATTCATCGAGGACAGTCAACCAGGGTAATGGCGCGGACTCCCGGTCAGC
AGGCGTTCCTGGTCTTACGACTACCCCTGGAGCAACTGGAGTGTCACCAG
GACTGCCATCATCACCCGTTCCTGGTCAATATCAAACTTCCGAACCTGTA
AGCGTGTTGATTGGTCCCCCTCCGAAGTGCTCGGACATTTTCAGCAAGGT
CATCGTTGAGCTTGATAAAGATCTATATCCTGAGAACAACATGATAGAGT
GGAAGCGGAAGGACGGTGAACCTTCGTCAAATGGCTTTGAGATTTCGCGA
GCTGGCTCGAACGAATTCACTGCGAAGATCTACCTGTTTGTGGATCACAA
GCCGGATCACTTTCGTATATCATGGCCTCTTTCTCGTCTAATCGGAATAA
AGAGGGAGACGAAGAAAAACATTTACAACAGTGTTTGGCAATACGTGAAG
AAGAACAGGTTGCAATGCGTTGACGACCGCACAGCTGTGCGACTGGATCC
TGGTTTGAAGACCTTGCTTGGACCTGTGAATCAAACTGTAGAGGTTTTGA
AGCTTCAGCAGCTGTTTGCTATCATCAAGAGCCACATGGGACCGTTGGAA
CCCATACAGATTGAGTACGAGGTGAAATTGAATGGAGATGTTGTTGACAA
TCAGGACTGCTACGATATCGAAGTGAATGTTCAGGACACAGGCTTAATTG
AGTCTGCTCGAAAAGCGGGGACATTTGGACTCGGTCTCCCGCAGTCGACG
GAATATGAAGCTCTCAGCGAGAAGCATATGGTTGCACTTCAGAAAATTGC
TGAACATAAGAAACGAAGAGACTTCTTCGTCGGTTTTTGTTCGAATCCTG
TCCAGTTTATAAACCATTTAATTCTGAGCCAAACCAGGGACTTGAAAGTT
CTCGGTGGTAGCACAGGTAGGAATCCCGAGGAAGAACGGAGAGCATCTTT
TTACCAGCAGCAGTGGGTGTATGAGGCGGTTCCCCGATATTTGCTGAGAA
AAGCAATTGCTGACACTGCTGAAGAGACGGTTGAAGGCGTTCTCAAGAGC
TAG
back to top