Ggra1450.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1450.t1
Unique NameGgra1450.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:120363..121355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog469381.Dpep_2235
Preferred nameclpB
PFAMsAAA,AAA_2,ClpB_D2-small,Clp_N
Max annot lvl508458|Synergistetes
KEGG koko:K03695
KEGG Pathwayko04213,map04213
Evalue8.7e-26
EggNOG OGsCOG0542@1|root,COG0542@2|Bacteria,3TA3A@508458|Synergistetes
DescriptionPart of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1450Ggra1450Gracilaria gracilis GNS1m malegenetig00000844_pilon 120363..121355 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1450.t1.stop1Ggra1450.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 120363..120365 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1450.t1.CDS1Ggra1450.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 120363..121355 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1450.t1.exon1Ggra1450.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 120363..121355 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1450.t1.start1Ggra1450.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 121353..121355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1450.t1Ggra1450.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 120363..121355 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1450.t1 ID=Ggra1450.t1|Name=Ggra1450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=331bp
MEMRDQQLVSTETPDAFSKLLTYPFVYCISERVKNEGQFPFEGYAETIDE
TLHAICNGNSVLLVGEPGIGKRSLSLGLARRLASLKKDSGNPIYTRTVYT
LSLGNYFWSGGSKDARQMQRNISEVLSHVERAGPEHIVLCIDDVDILGFV
DKIVNEGTKSKAEQHPFSLENMLRFLLFDKKVFCLCTCIRSAYKRLIESD
TYYDEKFTKSFRVIHMKPPSVPTSLRILAAHKDRIEKEHNVLITNEAISA
AVICADRYVTHRALPEKAIDVLGEACGIARSRVYNTNECHDGSSISVLVQ
RSDVERLIYNWCGVTVQQLGDYVGAANTSS*
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spliced messenger RNA

>Ggra1450.t1 ID=Ggra1450.t1|Name=Ggra1450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000844_pilon:120363..121355- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATGCGGGATCAGCAGCTCGTCTCTACAGAAACCCCTGATGCATT
TTCAAAGCTTCTTACCTATCCTTTCGTCTACTGCATTTCTGAAAGAGTGA
AGAATGAGGGACAATTCCCCTTCGAAGGGTATGCTGAGACGATTGATGAG
ACCCTACATGCCATTTGTAATGGTAACTCTGTCTTGCTTGTCGGAGAGCC
CGGTATTGGCAAGCGCTCTTTATCTCTGGGTCTTGCTCGTCGTCTCGCTT
CTTTGAAAAAGGACTCCGGAAACCCCATTTACACTCGTACCGTGTATACC
TTATCGCTTGGAAACTACTTTTGGAGTGGTGGTTCCAAAGACGCACGACA
GATGCAACGAAACATAAGCGAAGTTCTTTCCCATGTAGAGCGAGCAGGCC
CGGAACACATCGTGCTCTGCATAGACGATGTGGATATCCTTGGTTTCGTT
GACAAGATTGTTAACGAAGGTACAAAAAGCAAGGCAGAACAACATCCCTT
TTCCTTGGAAAACATGCTTCGGTTTCTCTTGTTCGACAAGAAAGTTTTCT
GCTTATGCACATGTATTCGAAGTGCCTACAAGAGATTGATAGAATCTGAC
ACATACTACGATGAGAAGTTCACCAAATCATTCCGTGTTATTCATATGAA
GCCCCCGAGCGTACCAACATCGCTACGGATTCTGGCTGCACACAAAGATC
GCATAGAGAAAGAGCACAACGTTCTCATTACGAATGAAGCTATATCTGCT
GCTGTAATATGTGCAGATCGATATGTCACACACCGTGCTCTGCCAGAAAA
AGCCATTGATGTCTTGGGTGAGGCATGTGGCATAGCTCGCTCTAGAGTGT
ATAACACCAATGAATGCCACGACGGCTCGTCTATCAGTGTTTTAGTGCAG
AGAAGTGATGTAGAGCGTTTGATATATAATTGGTGTGGCGTCACAGTACA
ACAATTGGGGGACTACGTTGGTGCTGCCAATACGAGCTCATGA
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protein sequence of Ggra1450.t1

>Ggra1450.t1 ID=Ggra1450.t1|Name=Ggra1450.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=331bp
MEMRDQQLVSTETPDAFSKLLTYPFVYCISERVKNEGQFPFEGYAETIDE
TLHAICNGNSVLLVGEPGIGKRSLSLGLARRLASLKKDSGNPIYTRTVYT
LSLGNYFWSGGSKDARQMQRNISEVLSHVERAGPEHIVLCIDDVDILGFV
DKIVNEGTKSKAEQHPFSLENMLRFLLFDKKVFCLCTCIRSAYKRLIESD
TYYDEKFTKSFRVIHMKPPSVPTSLRILAAHKDRIEKEHNVLITNEAISA
AVICADRYVTHRALPEKAIDVLGEACGIARSRVYNTNECHDGSSISVLVQ
RSDVERLIYNWCGVTVQQLGDYVGAANTSS*
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mRNA from alignment at tig00000844_pilon:120363..121355-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1450.t1 ID=Ggra1450.t1|Name=Ggra1450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000844_pilon:120363..121355- (Gracilaria gracilis GNS1m male)
ATGGAAATGCGGGATCAGCAGCTCGTCTCTACAGAAACCCCTGATGCATT
TTCAAAGCTTCTTACCTATCCTTTCGTCTACTGCATTTCTGAAAGAGTGA
AGAATGAGGGACAATTCCCCTTCGAAGGGTATGCTGAGACGATTGATGAG
ACCCTACATGCCATTTGTAATGGTAACTCTGTCTTGCTTGTCGGAGAGCC
CGGTATTGGCAAGCGCTCTTTATCTCTGGGTCTTGCTCGTCGTCTCGCTT
CTTTGAAAAAGGACTCCGGAAACCCCATTTACACTCGTACCGTGTATACC
TTATCGCTTGGAAACTACTTTTGGAGTGGTGGTTCCAAAGACGCACGACA
GATGCAACGAAACATAAGCGAAGTTCTTTCCCATGTAGAGCGAGCAGGCC
CGGAACACATCGTGCTCTGCATAGACGATGTGGATATCCTTGGTTTCGTT
GACAAGATTGTTAACGAAGGTACAAAAAGCAAGGCAGAACAACATCCCTT
TTCCTTGGAAAACATGCTTCGGTTTCTCTTGTTCGACAAGAAAGTTTTCT
GCTTATGCACATGTATTCGAAGTGCCTACAAGAGATTGATAGAATCTGAC
ACATACTACGATGAGAAGTTCACCAAATCATTCCGTGTTATTCATATGAA
GCCCCCGAGCGTACCAACATCGCTACGGATTCTGGCTGCACACAAAGATC
GCATAGAGAAAGAGCACAACGTTCTCATTACGAATGAAGCTATATCTGCT
GCTGTAATATGTGCAGATCGATATGTCACACACCGTGCTCTGCCAGAAAA
AGCCATTGATGTCTTGGGTGAGGCATGTGGCATAGCTCGCTCTAGAGTGT
ATAACACCAATGAATGCCACGACGGCTCGTCTATCAGTGTTTTAGTGCAG
AGAAGTGATGTAGAGCGTTTGATATATAATTGGTGTGGCGTCACAGTACA
ACAATTGGGGGACTACGTTGGTGCTGCCAATACGAGCTCATGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:120363..121355-

>Ggra1450.t1 ID=Ggra1450.t1|Name=Ggra1450.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00000844_pilon:120363..121355- (Gracilaria gracilis GNS1m male)
ATGGAAATGCGGGATCAGCAGCTCGTCTCTACAGAAACCCCTGATGCATT
TTCAAAGCTTCTTACCTATCCTTTCGTCTACTGCATTTCTGAAAGAGTGA
AGAATGAGGGACAATTCCCCTTCGAAGGGTATGCTGAGACGATTGATGAG
ACCCTACATGCCATTTGTAATGGTAACTCTGTCTTGCTTGTCGGAGAGCC
CGGTATTGGCAAGCGCTCTTTATCTCTGGGTCTTGCTCGTCGTCTCGCTT
CTTTGAAAAAGGACTCCGGAAACCCCATTTACACTCGTACCGTGTATACC
TTATCGCTTGGAAACTACTTTTGGAGTGGTGGTTCCAAAGACGCACGACA
GATGCAACGAAACATAAGCGAAGTTCTTTCCCATGTAGAGCGAGCAGGCC
CGGAACACATCGTGCTCTGCATAGACGATGTGGATATCCTTGGTTTCGTT
GACAAGATTGTTAACGAAGGTACAAAAAGCAAGGCAGAACAACATCCCTT
TTCCTTGGAAAACATGCTTCGGTTTCTCTTGTTCGACAAGAAAGTTTTCT
GCTTATGCACATGTATTCGAAGTGCCTACAAGAGATTGATAGAATCTGAC
ACATACTACGATGAGAAGTTCACCAAATCATTCCGTGTTATTCATATGAA
GCCCCCGAGCGTACCAACATCGCTACGGATTCTGGCTGCACACAAAGATC
GCATAGAGAAAGAGCACAACGTTCTCATTACGAATGAAGCTATATCTGCT
GCTGTAATATGTGCAGATCGATATGTCACACACCGTGCTCTGCCAGAAAA
AGCCATTGATGTCTTGGGTGAGGCATGTGGCATAGCTCGCTCTAGAGTGT
ATAACACCAATGAATGCCACGACGGCTCGTCTATCAGTGTTTTAGTGCAG
AGAAGTGATGTAGAGCGTTTGATATATAATTGGTGTGGCGTCACAGTACA
ACAATTGGGGGACTACGTTGGTGCTGCCAATACGAGCTCATGA
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