Ggra1443.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1443.t1
Unique NameGgra1443.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length496
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:100765..102342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708998.1
PFAMsADK,DUF4821
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00939
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
Evalue9.06e-78
EggNOG OGsCOG0563@1|root,KOG3078@2759|Eukaryota
EC2.7.4.3
Descriptionadenylate kinase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1443Ggra1443Gracilaria gracilis GNS1m malegenetig00000844_pilon 100765..102342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1443.t1Ggra1443.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 100765..102342 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1443.t1.stop1Ggra1443.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 100765..100767 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1443.t1.CDS1Ggra1443.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 100765..100949 -
Ggra1443.t1.CDS2Ggra1443.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 101040..102342 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1443.t1.exon1Ggra1443.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 100765..100949 -
Ggra1443.t1.exon2Ggra1443.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 101040..102342 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1443.t1.intron1Ggra1443.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 100950..101039 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1443.t1.start1Ggra1443.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 102340..102342 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1443.t1 ID=Ggra1443.t1|Name=Ggra1443.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=496bp
MAFVAPFAQPRSSPRTRYRVLCGLRTTSFTSRPSLRAQSWSNALRPQKES
PLVVKSPLLTSMSVATTPKILISGAPASGKGTQCEFIVEKYGVVHISTGD
MLRAAVRNATPLGLQAKSYMDSGKLVPDDLVISMLKERITQPDCVEKGWL
LDGFPRTAVQAQALDDAGILPSSVVVLEVDDDILVERVVGRRSDPQTGKI
YHMTFSPPTDPQVAARLVQRSDDTEEKARVRLETYYTHAQSINDHYGAVL
KKVDGNRSKDVVFGDLSTIIDSADPARKVDAESPETKGNATGYGSTVSDS
SQYMPVSEFVKRAEEAYERGMLRDEDVNWSGQATVDTPSSAGTSGYADLG
RRMDLVIGDAITLVAFAYIGRFHHGDKSFDVDVLKTAAPFLSAWFVTTPL
LGAYTRAATANVSASLQYFVRAWAIAIPMGIGLRGVVTDHVPPVAFAVIS
LIATLILMGSWRVLYVLARGEETEDARRGGIIETFRMVTTLLRRW*
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spliced messenger RNA

>Ggra1443.t1 ID=Ggra1443.t1|Name=Ggra1443.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000844_pilon:100765..102342- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTGTTGCCCCTTTTGCTCAACCAAGGTCCTCACCTCGCACGCG
ATATAGAGTTTTGTGCGGCCTCAGAACGACAAGCTTTACTTCACGGCCAA
GTCTCCGAGCTCAGTCCTGGTCGAACGCCCTTCGACCTCAAAAAGAGTCT
CCCCTAGTCGTCAAATCGCCATTGCTCACGTCCATGAGCGTTGCCACCAC
CCCAAAAATCTTAATCTCAGGCGCCCCCGCGTCTGGAAAAGGCACCCAGT
GTGAATTTATCGTCGAGAAGTATGGAGTTGTTCACATTTCTACCGGCGAT
ATGTTACGAGCGGCGGTTCGAAATGCCACGCCTTTGGGACTGCAAGCCAA
ATCATATATGGACTCGGGCAAACTTGTTCCAGATGATCTCGTTATATCCA
TGTTGAAGGAGCGAATAACTCAACCGGACTGCGTTGAAAAGGGGTGGTTG
TTGGACGGTTTCCCACGAACGGCAGTGCAAGCTCAAGCTCTTGACGACGC
TGGCATCCTGCCTTCCTCTGTGGTTGTACTTGAAGTAGATGATGATATAC
TTGTTGAACGTGTTGTGGGGCGTCGTTCTGATCCTCAAACTGGAAAAATA
TATCACATGACATTTAGTCCTCCGACTGACCCTCAAGTAGCAGCTCGTCT
CGTACAACGCTCAGATGATACTGAAGAAAAAGCAAGAGTACGGCTGGAAA
CGTATTATACCCATGCGCAGTCCATCAATGACCACTACGGCGCGGTTCTG
AAGAAGGTTGATGGTAATCGTAGCAAAGACGTAGTGTTTGGGGATTTAAG
CACAATTATCGACTCTGCTGATCCCGCACGCAAAGTTGATGCTGAATCTC
CCGAGACGAAAGGCAATGCAACAGGGTATGGTAGCACCGTTTCGGATTCT
TCGCAGTACATGCCAGTTTCTGAGTTTGTTAAACGTGCGGAAGAAGCATA
CGAACGAGGAATGCTTCGCGACGAGGACGTCAACTGGAGTGGTCAGGCAA
CTGTAGACACTCCTAGCTCTGCAGGAACATCGGGCTATGCAGACTTGGGT
CGTCGTATGGACCTCGTTATTGGTGATGCAATTACTCTGGTAGCGTTTGC
CTATATCGGTCGTTTTCATCATGGAGACAAATCATTCGATGTTGACGTGC
TGAAGACCGCGGCCCCTTTTCTATCTGCATGGTTTGTTACTACGCCTCTG
CTTGGCGCGTACACACGAGCAGCCACTGCCAATGTGTCAGCGTCGCTTCA
GTACTTTGTTCGAGCTTGGGCAATCGCGATTCCCATGGGAATTGGTCTTC
GAGGTGTGGTTACAGACCACGTTCCCCCTGTGGCTTTTGCAGTAATCTCT
CTAATTGCAACTCTGATTTTGATGGGGTCGTGGAGGGTTTTATATGTTTT
GGCGCGTGGTGAAGAAACTGAAGACGCTAGAAGGGGGGGTATCATTGAGA
CTTTTAGGATGGTCACAACTCTTCTAAGACGGTGGTAA
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protein sequence of Ggra1443.t1

>Ggra1443.t1 ID=Ggra1443.t1|Name=Ggra1443.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=496bp
MAFVAPFAQPRSSPRTRYRVLCGLRTTSFTSRPSLRAQSWSNALRPQKES
PLVVKSPLLTSMSVATTPKILISGAPASGKGTQCEFIVEKYGVVHISTGD
MLRAAVRNATPLGLQAKSYMDSGKLVPDDLVISMLKERITQPDCVEKGWL
LDGFPRTAVQAQALDDAGILPSSVVVLEVDDDILVERVVGRRSDPQTGKI
YHMTFSPPTDPQVAARLVQRSDDTEEKARVRLETYYTHAQSINDHYGAVL
KKVDGNRSKDVVFGDLSTIIDSADPARKVDAESPETKGNATGYGSTVSDS
SQYMPVSEFVKRAEEAYERGMLRDEDVNWSGQATVDTPSSAGTSGYADLG
RRMDLVIGDAITLVAFAYIGRFHHGDKSFDVDVLKTAAPFLSAWFVTTPL
LGAYTRAATANVSASLQYFVRAWAIAIPMGIGLRGVVTDHVPPVAFAVIS
LIATLILMGSWRVLYVLARGEETEDARRGGIIETFRMVTTLLRRW*
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mRNA from alignment at tig00000844_pilon:100765..102342-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1443.t1 ID=Ggra1443.t1|Name=Ggra1443.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1578bp|location=Sequence derived from alignment at tig00000844_pilon:100765..102342- (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTTGCCCCTTTTGCTCAACCAAGGTCCTCACCTCGCACGCG
ATATAGAGTTTTGTGCGGCCTCAGAACGACAAGCTTTACTTCACGGCCAA
GTCTCCGAGCTCAGTCCTGGTCGAACGCCCTTCGACCTCAAAAAGAGTCT
CCCCTAGTCGTCAAATCGCCATTGCTCACGTCCATGAGCGTTGCCACCAC
CCCAAAAATCTTAATCTCAGGCGCCCCCGCGTCTGGAAAAGGCACCCAGT
GTGAATTTATCGTCGAGAAGTATGGAGTTGTTCACATTTCTACCGGCGAT
ATGTTACGAGCGGCGGTTCGAAATGCCACGCCTTTGGGACTGCAAGCCAA
ATCATATATGGACTCGGGCAAACTTGTTCCAGATGATCTCGTTATATCCA
TGTTGAAGGAGCGAATAACTCAACCGGACTGCGTTGAAAAGGGGTGGTTG
TTGGACGGTTTCCCACGAACGGCAGTGCAAGCTCAAGCTCTTGACGACGC
TGGCATCCTGCCTTCCTCTGTGGTTGTACTTGAAGTAGATGATGATATAC
TTGTTGAACGTGTTGTGGGGCGTCGTTCTGATCCTCAAACTGGAAAAATA
TATCACATGACATTTAGTCCTCCGACTGACCCTCAAGTAGCAGCTCGTCT
CGTACAACGCTCAGATGATACTGAAGAAAAAGCAAGAGTACGGCTGGAAA
CGTATTATACCCATGCGCAGTCCATCAATGACCACTACGGCGCGGTTCTG
AAGAAGGTTGATGGTAATCGTAGCAAAGACGTAGTGTTTGGGGATTTAAG
CACAATTATCGACTCTGCTGATCCCGCACGCAAAGTTGATGCTGAATCTC
CCGAGACGAAAGGCAATGCAACAGGGTATGGTAGCACCGTTTCGGATTCT
TCGCAGTACATGCCAGTTTCTGAGTTTGTTAAACGTGCGGAAGAAGCATA
CGAACGAGGAATGCTTCGCGACGAGGACGTCAACTGGAGTGGTCAGGCAA
CTGTAGACACTCCTAGCTCTGCAGGAACATCGGGCTATGCAGACTTGGGT
CGTCGTATGGACCTCGTTATTGGTGATGCAATTACTCTGGTAGCGTTTGC
CTATATCGGTCGTTTTCATCATGGAGACAAATCATTCGATGTTGACGTGC
TGAAGACCGCGGCCCCTTTTCTATCTGCATGGTTTGTTACTACGCCTCTG
CTTGGCGCGTACACACGAGCAGCCACTGCCAATGTGTCAGCGTCGCTTCA
GTACTTTGTTCGAGCTTGGGCAATCGCGATTCCCATGGGAATTGGTCTTC
GAGGTAAGTCGGACAGGAAAGCAGTTTACGCTCTTTGTAGTTTTAACAGA
TTCTAACCTCTGACGTGCTTGCCGATGCCTTGCTTGCCTACAGGTGTGGT
TACAGACCACGTTCCCCCTGTGGCTTTTGCAGTAATCTCTCTAATTGCAA
CTCTGATTTTGATGGGGTCGTGGAGGGTTTTATATGTTTTGGCGCGTGGT
GAAGAAACTGAAGACGCTAGAAGGGGGGGTATCATTGAGACTTTTAGGAT
GGTCACAACTCTTCTAAGACGGTGGTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:100765..102342-

>Ggra1443.t1 ID=Ggra1443.t1|Name=Ggra1443.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1488bp|location=Sequence derived from alignment at tig00000844_pilon:100765..102342- (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTTGCCCCTTTTGCTCAACCAAGGTCCTCACCTCGCACGCG
ATATAGAGTTTTGTGCGGCCTCAGAACGACAAGCTTTACTTCACGGCCAA
GTCTCCGAGCTCAGTCCTGGTCGAACGCCCTTCGACCTCAAAAAGAGTCT
CCCCTAGTCGTCAAATCGCCATTGCTCACGTCCATGAGCGTTGCCACCAC
CCCAAAAATCTTAATCTCAGGCGCCCCCGCGTCTGGAAAAGGCACCCAGT
GTGAATTTATCGTCGAGAAGTATGGAGTTGTTCACATTTCTACCGGCGAT
ATGTTACGAGCGGCGGTTCGAAATGCCACGCCTTTGGGACTGCAAGCCAA
ATCATATATGGACTCGGGCAAACTTGTTCCAGATGATCTCGTTATATCCA
TGTTGAAGGAGCGAATAACTCAACCGGACTGCGTTGAAAAGGGGTGGTTG
TTGGACGGTTTCCCACGAACGGCAGTGCAAGCTCAAGCTCTTGACGACGC
TGGCATCCTGCCTTCCTCTGTGGTTGTACTTGAAGTAGATGATGATATAC
TTGTTGAACGTGTTGTGGGGCGTCGTTCTGATCCTCAAACTGGAAAAATA
TATCACATGACATTTAGTCCTCCGACTGACCCTCAAGTAGCAGCTCGTCT
CGTACAACGCTCAGATGATACTGAAGAAAAAGCAAGAGTACGGCTGGAAA
CGTATTATACCCATGCGCAGTCCATCAATGACCACTACGGCGCGGTTCTG
AAGAAGGTTGATGGTAATCGTAGCAAAGACGTAGTGTTTGGGGATTTAAG
CACAATTATCGACTCTGCTGATCCCGCACGCAAAGTTGATGCTGAATCTC
CCGAGACGAAAGGCAATGCAACAGGGTATGGTAGCACCGTTTCGGATTCT
TCGCAGTACATGCCAGTTTCTGAGTTTGTTAAACGTGCGGAAGAAGCATA
CGAACGAGGAATGCTTCGCGACGAGGACGTCAACTGGAGTGGTCAGGCAA
CTGTAGACACTCCTAGCTCTGCAGGAACATCGGGCTATGCAGACTTGGGT
CGTCGTATGGACCTCGTTATTGGTGATGCAATTACTCTGGTAGCGTTTGC
CTATATCGGTCGTTTTCATCATGGAGACAAATCATTCGATGTTGACGTGC
TGAAGACCGCGGCCCCTTTTCTATCTGCATGGTTTGTTACTACGCCTCTG
CTTGGCGCGTACACACGAGCAGCCACTGCCAATGTGTCAGCGTCGCTTCA
GTACTTTGTTCGAGCTTGGGCAATCGCGATTCCCATGGGAATTGGTCTTC
GAGGTGTGGTTACAGACCACGTTCCCCCTGTGGCTTTTGCAGTAATCTCT
CTAATTGCAACTCTGATTTTGATGGGGTCGTGGAGGGTTTTATATGTTTT
GGCGCGTGGTGAAGAAACTGAAGACGCTAGAAGGGGGGGTATCATTGAGA
CTTTTAGGATGGTCACAACTCTTCTAAGACGGTGGTAA
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