Ggra1441.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1441.t1
Unique NameGgra1441.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:96457..98269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LJL8
PFAMsANF_receptor,FKBP_C,SBP_bac_3
Max annot lvl2759|Eukaryota
KEGG koko:K01802
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009579,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031977,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044436,GO:0044444,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
Evalue3.77e-47
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota
EC5.2.1.8
Descriptionhistone peptidyl-prolyl isomerization
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1441Ggra1441Gracilaria gracilis GNS1m malegenetig00000844_pilon 96457..98269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1441.t1Ggra1441.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 96457..98269 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1441.t1.start1Ggra1441.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 96457..96459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1441.t1.CDS1Ggra1441.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 96457..96497 +
Ggra1441.t1.CDS2Ggra1441.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 97828..98269 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1441.t1.exon1Ggra1441.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 96457..96497 +
Ggra1441.t1.exon2Ggra1441.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 97828..98269 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1441.t1.intron1Ggra1441.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 96498..97827 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1441.t1.stop1Ggra1441.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 98267..98269 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1441.t1 ID=Ggra1441.t1|Name=Ggra1441.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=161bp
MGKTLDVGSGKLGRKKRILAKAGALVQLPSGVSYRDVTVGKGYVPRDGDT
VAIHYSLFYNDLEVESSRESQGLAASPLGFTFGATSGPGSIMRGVNVGMD
GMRVGGLRLITVPPELAFGRKGKAPLIPADSTVDFAVSLLSCKRAGTNPN
SVANPKAQAY*
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spliced messenger RNA

>Ggra1441.t1 ID=Ggra1441.t1|Name=Ggra1441.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00000844_pilon:96457..98269+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAAAACGCTAGACGTTGGGAGTGGCAAGTTGGGACGCAAGAAGCG
CATCCTGGCCAAGGCGGGCGCGCTGGTGCAGCTGCCGTCCGGCGTGTCGT
ACCGCGACGTCACCGTTGGCAAGGGCTACGTCCCGCGCGATGGCGACACC
GTCGCCATTCATTACTCGCTCTTCTACAACGACCTGGAGGTGGAGAGCAG
TCGCGAGAGCCAGGGCTTGGCGGCTAGTCCGCTGGGCTTTACGTTTGGCG
CCACGTCGGGGCCGGGCAGCATTATGAGGGGGGTCAATGTTGGTATGGAC
GGTATGAGAGTTGGCGGCTTGAGGCTCATCACTGTGCCCCCGGAATTGGC
CTTTGGACGCAAGGGCAAGGCGCCGCTTATCCCTGCCGACTCCACCGTTG
ACTTTGCCGTTTCGCTGCTGTCGTGTAAACGTGCTGGCACTAATCCGAAC
AGCGTGGCCAACCCCAAGGCGCAGGCGTATTGA
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protein sequence of Ggra1441.t1

>Ggra1441.t1 ID=Ggra1441.t1|Name=Ggra1441.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=161bp
MGKTLDVGSGKLGRKKRILAKAGALVQLPSGVSYRDVTVGKGYVPRDGDT
VAIHYSLFYNDLEVESSRESQGLAASPLGFTFGATSGPGSIMRGVNVGMD
GMRVGGLRLITVPPELAFGRKGKAPLIPADSTVDFAVSLLSCKRAGTNPN
SVANPKAQAY*
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mRNA from alignment at tig00000844_pilon:96457..98269+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1441.t1 ID=Ggra1441.t1|Name=Ggra1441.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1813bp|location=Sequence derived from alignment at tig00000844_pilon:96457..98269+ (Gracilaria gracilis GNS1m male)
ATGGGTAAAACGCTAGACGTTGGGAGTGGCAAGTTGGGACGGTGTGATAG
CCAGCCGTATATATGGCGCAGCTGACGGCCAATCTTGAGATATTACATGT
CGTCTGCGCACGGAGAAGTGTTAACCCTACATGGAAACAGCTTTTTGCAC
CTAAACAGACAACAGTTGTGCCATCGAGCACGCTCCATTTGAATTCAACG
GCGGCGCAATTTCAATATGCAAAGTTGGTGGCACACACTGTGTGCGCTGC
ATATGCGTCCGTTTATGCAGCGCATGTGCATGGCAGCTATGATGACATTA
ATGCACAGCAACCAAAAGTTATTATTAAACAGCGCAGCTTTAGGTGAATA
AAGCATTCCCGAATCTCGTGAGCTACAATATAATATTGCAATAAAAGCGT
GCATTCTAAATCATTATTGATATGAGCTATTATCAGCACAAGCTCAAAAA
GCAACAAGCGCTCGTGCGAGCGCAGCATGCATCCATCAAAACACAACCGC
CAGACGGCACACGCCGTcgcgcgcgcgcgcgcgcgcgcgcTTCAACACGT
CACGTAAGCACAAGTGCCATGCAGGCAGCGTTCGCCGTGGCGCAGCGCGC
AGAATAATCAGCCCCACAAACCGCCGCGCCCAAGGCGCCATTAGAGTTTA
TAGCTGCTCCACTAGGGTAAACGCTACTCCTTATCCCTACCCGGTGAGGG
TAGGGTTAGGTACTGGTAACTTTAAAAGCGCAGCTCCAGGTCCAACCcgc
gcgcgagacgtgtcagccgccgccgcgcgcctgcgccagcgccccgccgc
agtggcggtccgcactcgctccgcgtcgcTCCCGATGCGGGGGCGGGAGT
CGTCCCGCCCCCGCATCACGGAGCATGGCGGCGCGCACCAGCGCGCCCAC
GCCATCCACGTCGTCCACGTGCCACACGTCAACCACGTCATCCACGCGCC
CACGCGCCCACGCCGCACACGCGTCGCGCACCAAACCGCCCACCCCGCAC
CCCGAGATCTCCGCTGCAGCTCGCGCTCTGCTGCCGCCGCGTGCGGCTCG
GCAACCAACGTCATCATCATCAAGCGCTCGGGCGCAATCGCGGCGCGCGT
CGCCCGCTCACCCGCCGCTAGCAGCAGCTGTCATGcgccgcccgcccgcc
gccgccgccgccttctgcgcgtcccctctgccgccgtcgcgcgcgtcgcc
gcgccgccgcgccgcgcgcgtcttgtgcgcgcgcgagccgccgacgccgc
cgccgccgccgccgcgcgcgcacgccgtgtcgcgccgccggctgctggcg
ctgtccgtggcggcgtgcggcgcggtgggcgcggccgctgcgggcgcgcc
tctccccgcgctggcgcTCAGCAAGAAGCGCATCCTGGCCAAGGCGGGCG
CGCTGGTGCAGCTGCCGTCCGGCGTGTCGTACCGCGACGTCACCGTTGGC
AAGGGCTACGTCCCGCGCGATGGCGACACCGTCGCCATTCATTACTCGCT
CTTCTACAACGACCTGGAGGTGGAGAGCAGTCGCGAGAGCCAGGGCTTGG
CGGCTAGTCCGCTGGGCTTTACGTTTGGCGCCACGTCGGGGCCGGGCAGC
ATTATGAGGGGGGTCAATGTTGGTATGGACGGTATGAGAGTTGGCGGCTT
GAGGCTCATCACTGTGCCCCCGGAATTGGCCTTTGGACGCAAGGGCAAGG
CGCCGCTTATCCCTGCCGACTCCACCGTTGACTTTGCCGTTTCGCTGCTG
TCGTGTAAACGTGCTGGCACTAATCCGAACAGCGTGGCCAACCCCAAGGC
GCAGGCGTATTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:96457..98269+

>Ggra1441.t1 ID=Ggra1441.t1|Name=Ggra1441.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=483bp|location=Sequence derived from alignment at tig00000844_pilon:96457..98269+ (Gracilaria gracilis GNS1m male)
ATGGGTAAAACGCTAGACGTTGGGAGTGGCAAGTTGGGACGCAAGAAGCG
CATCCTGGCCAAGGCGGGCGCGCTGGTGCAGCTGCCGTCCGGCGTGTCGT
ACCGCGACGTCACCGTTGGCAAGGGCTACGTCCCGCGCGATGGCGACACC
GTCGCCATTCATTACTCGCTCTTCTACAACGACCTGGAGGTGGAGAGCAG
TCGCGAGAGCCAGGGCTTGGCGGCTAGTCCGCTGGGCTTTACGTTTGGCG
CCACGTCGGGGCCGGGCAGCATTATGAGGGGGGTCAATGTTGGTATGGAC
GGTATGAGAGTTGGCGGCTTGAGGCTCATCACTGTGCCCCCGGAATTGGC
CTTTGGACGCAAGGGCAAGGCGCCGCTTATCCCTGCCGACTCCACCGTTG
ACTTTGCCGTTTCGCTGCTGTCGTGTAAACGTGCTGGCACTAATCCGAAC
AGCGTGGCCAACCCCAAGGCGCAGGCGTATTGA
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