Ggra1440.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1440.t1
Unique NameGgra1440.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:94170..95405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1440Ggra1440Gracilaria gracilis GNS1m malegenetig00000844_pilon 94170..95405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1440.t1Ggra1440.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 94170..95405 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1440.t1.stop1Ggra1440.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 94170..94172 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1440.t1.CDS1Ggra1440.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 94170..94184 -
Ggra1440.t1.CDS2Ggra1440.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 94662..95405 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1440.t1.exon1Ggra1440.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 94170..94184 -
Ggra1440.t1.exon2Ggra1440.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 94662..95405 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1440.t1.intron1Ggra1440.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 94185..94661 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1440.t1.start1Ggra1440.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 95403..95405 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1440.t1 ID=Ggra1440.t1|Name=Ggra1440.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=253bp
MSAKPPFDPADLLPKSYTPRSRASSSSSSSSASASAPSQPPSSSARHARH
APRAVPDRQRSRAGASAGASASAGASAARSPPRPPPRPPKFNRSRTNNVD
HPVAELQRVRAMSPQQWAKESQRFVKHYLPLVERGIDIEPLVRANARAAA
AAAGLNKPSREVPPLLIPPSAIPEYNGLLTPEELDAASCAPANAAAAAAA
AAAAAAAAAPPPPQPAPKPKPSASASQRTRAQRPALPSSSVMHPRAAPHY
PP*
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spliced messenger RNA

>Ggra1440.t1 ID=Ggra1440.t1|Name=Ggra1440.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000844_pilon:94170..95405- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCAAGCCGCCTTTCGACCCGGCCGACCTGCTGCCCAAGTCGTA
CACGCCGCGCTCGCGCGCCTCCTCCTCGTCGTCGTCATCGTCCGCGTCCG
CGTCTGCGCCCTCGCAGCCGCCGTCGTCGTCCGCGCGCCACGCGCGCCAC
GCGCCGCGCGCAGTGCCAGACCGCCAGCGCTCGCGCGCCGGCGCCAGCGC
CGGCGCCAGCGCCAGCGCCGGCGCCAGTGCAGCGCGCTCGCCGCCGCGCC
CGCCGCCGCGCCCGCCCAAGTTCAACCGCTCGCGCACCAACAACGTGGAC
CACCCGGTGGCCGAGCTGCAGCGCGTGCGCGCAATGTCGCCGCAGCAGTG
GGCAAAGGAGTCGCAGCGCTTCGTCAAGCACTACCTGCCATTGGTGGAGC
GCGGCATCGACATTGAGCCGCTGGTACGCGCCAATGCGCGCGCGGCTGCC
GCCGCCGCGGGGCTCAACAAACCGTCGCGTGAGGTGCCGCCGCTGCTCAT
CCCGCCGTCCGCCATCCCGGAGTACAACGGGCTGCTCACGCCGGAGGAGC
TGGACGCCGCGTCCTGCGCGCCCGCCAATGCCGCCGCCGCTGCCGCCGCT
GCCGCTGCCGCCGCCGCCGCCGCCGCGCCACCGCCGCCACAGCCGGCGCC
CAAGCCCAAGCCCAGCGCGTCCGCGTCGCAGCGCACGCGCGCGCAGCGGC
CGGCGCTGCCGTCGTCGTCCGTGATGCACCCGCGCGCGGCGCCGCACTAC
CCGCCGTAG
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protein sequence of Ggra1440.t1

>Ggra1440.t1 ID=Ggra1440.t1|Name=Ggra1440.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=253bp
MSAKPPFDPADLLPKSYTPRSRASSSSSSSSASASAPSQPPSSSARHARH
APRAVPDRQRSRAGASAGASASAGASAARSPPRPPPRPPKFNRSRTNNVD
HPVAELQRVRAMSPQQWAKESQRFVKHYLPLVERGIDIEPLVRANARAAA
AAAGLNKPSREVPPLLIPPSAIPEYNGLLTPEELDAASCAPANAAAAAAA
AAAAAAAAAPPPPQPAPKPKPSASASQRTRAQRPALPSSSVMHPRAAPHY
PP*
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mRNA from alignment at tig00000844_pilon:94170..95405-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1440.t1 ID=Ggra1440.t1|Name=Ggra1440.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000844_pilon:94170..95405- (Gracilaria gracilis GNS1m male)
ATGTCCGCCAAGCCGCCTTTCGACCCGGCCGACCTGCTGCCCAAGTCGTA
CACGCCGCGCTCGCGCGCCTCCTCCTCGTCGTCGTCATCGTCCGCGTCCG
CGTCTGCGCCCTCGCAGCCGCCGTCGTCGTCCGCGCGCCACGCGCGCCAC
GCGCCGCGCGCAGTGCCAGACCGCCAGCGCTCGCGCGCCGGCGCCAGCGC
CGGCGCCAGCGCCAGCGCCGGCGCCAGTGCAGCGCGCTCGCCGCCGCGCC
CGCCGCCGCGCCCGCCCAAGTTCAACCGCTCGCGCACCAACAACGTGGAC
CACCCGGTGGCCGAGCTGCAGCGCGTGCGCGCAATGTCGCCGCAGCAGTG
GGCAAAGGAGTCGCAGCGCTTCGTCAAGCACTACCTGCCATTGGTGGAGC
GCGGCATCGACATTGAGCCGCTGGTACGCGCCAATGCGCGCGCGGCTGCC
GCCGCCGCGGGGCTCAACAAACCGTCGCGTGAGGTGCCGCCGCTGCTCAT
CCCGCCGTCCGCCATCCCGGAGTACAACGGGCTGCTCACGCCGGAGGAGC
TGGACGCCGCGTCCTGCGCGCCCGCCAATGCCGCCGCCGCTGCCGCCGCT
GCCGCTGCCGCCGCCGCCGCCGCCGCGCCACCGCCGCCACAGCCGGCGCC
CAAGCCCAAGCCCAGCGCGTCCGCGTCGCAGCGCACGCGCGCGCAGCGGC
CGGCGCTGCCGTCGTCGTCCGTGATGCACCCGCGCGCGGCGCCGGTGCGA
CACGCGCGCCGCGCGCCGCCGCCGCCAGCCAGCAGCAGCAGCGCAGACGC
GCCGTTTCTGCCCGACACGCTCGACCAGCGGCCGCTGTCGCGCGCGCACG
CGGCCGTGCTGAGCGCGGCGGCGGCGCAGCGGCGCGCGATCGCGGACGGC
GCGGTGGCGCCGCCGTGGATGGCGCGCGGCAGGCGCGTGCCGCCGCAGCA
CAGGGGCGGCGGCGGCAGGGCGTCGTCAGCGTCGTCGTCAGCGTCGTCGT
CAGCGTCGGGTGCTGCGGCGGCAGCGCAGCGGCGCGCGATCGCGGACGGC
GCGGTGGCGCCGCCGTGGATGGCGCGCGGCAGGCGCGTGCCACCGCAGCA
CAGGGGCGGCGGCGGCAGGGCGTCGTCAGCGTCGTCGTCAGCGTCGTCGT
CAGCGTCGGGTGCTGCGGCGGCGGCTTCAGCGTCGTCGTCAAAGTGGAGC
AAACGGCCTTCGTCACGGCAGCACTACCCGCCGTAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:94170..95405-

>Ggra1440.t1 ID=Ggra1440.t1|Name=Ggra1440.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00000844_pilon:94170..95405- (Gracilaria gracilis GNS1m male)
ATGTCCGCCAAGCCGCCTTTCGACCCGGCCGACCTGCTGCCCAAGTCGTA
CACGCCGCGCTCGCGCGCCTCCTCCTCGTCGTCGTCATCGTCCGCGTCCG
CGTCTGCGCCCTCGCAGCCGCCGTCGTCGTCCGCGCGCCACGCGCGCCAC
GCGCCGCGCGCAGTGCCAGACCGCCAGCGCTCGCGCGCCGGCGCCAGCGC
CGGCGCCAGCGCCAGCGCCGGCGCCAGTGCAGCGCGCTCGCCGCCGCGCC
CGCCGCCGCGCCCGCCCAAGTTCAACCGCTCGCGCACCAACAACGTGGAC
CACCCGGTGGCCGAGCTGCAGCGCGTGCGCGCAATGTCGCCGCAGCAGTG
GGCAAAGGAGTCGCAGCGCTTCGTCAAGCACTACCTGCCATTGGTGGAGC
GCGGCATCGACATTGAGCCGCTGGTACGCGCCAATGCGCGCGCGGCTGCC
GCCGCCGCGGGGCTCAACAAACCGTCGCGTGAGGTGCCGCCGCTGCTCAT
CCCGCCGTCCGCCATCCCGGAGTACAACGGGCTGCTCACGCCGGAGGAGC
TGGACGCCGCGTCCTGCGCGCCCGCCAATGCCGCCGCCGCTGCCGCCGCT
GCCGCTGCCGCCGCCGCCGCCGCCGCGCCACCGCCGCCACAGCCGGCGCC
CAAGCCCAAGCCCAGCGCGTCCGCGTCGCAGCGCACGCGCGCGCAGCGGC
CGGCGCTGCCGTCGTCGTCCGTGATGCACCCGCGCGCGGCGCCGCACTAC
CCGCCGTAG
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