Ggra1439.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1439.t1
Unique NameGgra1439.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:92849..93904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO078CT
PFAMsPeptidase_C26
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0008150,GO:0016787,GO:0016810,GO:0016811,GO:0022603,GO:0048831,GO:0050789,GO:0050793,GO:0051239,GO:0060688,GO:0065007,GO:1900618,GO:1905428,GO:2000026,GO:2000032
Evalue4.96e-74
EggNOG OGsCOG2071@1|root,2QR1H@2759|Eukaryota
Descriptionglutamine metabolic process
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1439Ggra1439Gracilaria gracilis GNS1m malegenetig00000844_pilon 92849..93904 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1439.t1.start1Ggra1439.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 92849..92851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1439.t1.CDS1Ggra1439.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 92849..93904 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1439.t1.exon1Ggra1439.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 92849..93904 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1439.t1.stop1Ggra1439.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 93902..93904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1439.t1Ggra1439.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 92849..93904 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1439.t1 ID=Ggra1439.t1|Name=Ggra1439.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=352bp
MLLQNHAQPVILPRTPPLSKLLHAYRPIHGILLIEGEDIADKYHPFAAPL
TPAQAERVRQHHASDTTPDHQRDSIEFQLVQHALRYHVPILAICRGSQIL
NVAAGGKLHADIHTAVAHADKHIDYANYDAHRHPLFIRAHTPLFDWFRRR
TISVNSYHHQGIHTLAPRFEPMAHSPDGLVEAFYEPAQYDPPNGRFRVGL
QFHPERMQNVRRALDDQPPRFDYAGCPLPYKMLVTAARAYARRVHAVAAL
HAPLRAPAKAPPPPLPAAARLASLLRHAPQRRYSKEHVQRIVRSGATVHG
GTFLLRILAEERHELDRLSGLNLAGVCARARACPRVDERSSSPAVFAVAD
W*
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spliced messenger RNA

>Ggra1439.t1 ID=Ggra1439.t1|Name=Ggra1439.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000844_pilon:92849..93904+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTGCAAAACCACGCGCAGCCGGTGATCCTGCCGCGAACGCCGCC
GCTCAGCAAGCTGCTGCACGCCTACCGCCCCATCCACGGCATCCTGCTCA
TCGAGGGCGAGGACATTGCCGACAAGTATCATCCGTTCGCCGCCCCGCTC
ACCCCGGCGCAGGCCGAGCGCGTGCGCCAGCACCACGCGTCCGACACCAC
GCCCGACCACCAGCGCGACAGCATCGAGTTCCAGCTGGTGCAGCACGCGC
TGCGCTACCACGTGCCCATCCTGGCCATCTGCCGCGGCTCGCAGATCCTC
AACGTCGCCGCGGGCGGCAAGCTGCACGCCGACATCCACACCGCCGTCGC
CCACGCCGACAAGCACATCGACTACGCCAACTACGACGCCCACCGCCACC
CGCTCTTCATCCGCGCGCACACGCCGCTGTTCGACTGGTTCCGCCGCCGC
ACCATCTCCGTCAACAGCTACCACCACCAGGGCATCCACACGCTGGCGCC
GCGCTTCGAGCCCATGGCGCACTCGCCCGACGGCTTGGTGGAGGCCTTCT
ACGAACCGGCGCAGTACGACCCGCCCAACGGCCGCTTCCGCGTCGGGCTA
CAGTTCCACCCCGAGCGCATGCAAAACGTGCGCCGCGCGCTGGACGACCA
GCCGCCGCGCTTCGACTACGCCGGCTGCCCGCTGCCGTACAAGATGCTGG
TCACTGCGGCGCGCGCGTAcgcgcgccgcgtgcacgccgtcgccgcgttg
cacgcgccgctgcgcgcgccggcaaaggcgccgccgccgccgctgcccgc
cgccgccaggctggcgtcgctgctgcgccacgcgccgcagcgccgcTACT
CCAAGGAGCACGTGCAGCGCATCGTCAGGTCGGGCGCCACCGTGCACGGC
GGCACCTTCCTGCTGCGCATTTTGGCCGAGGAGCGCCACGAGCTGGACCG
CCTGAGCGGGCTCAACCTGGCCGGCGTGTGCGCGCGTGCGCGCGCGTGTC
CGCGCGTCGACGAGCGCTCCTCGTCGCCCGCTGTTTTTGCCGTCGCCGAT
TGGTAG
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protein sequence of Ggra1439.t1

>Ggra1439.t1 ID=Ggra1439.t1|Name=Ggra1439.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=352bp
MLLQNHAQPVILPRTPPLSKLLHAYRPIHGILLIEGEDIADKYHPFAAPL
TPAQAERVRQHHASDTTPDHQRDSIEFQLVQHALRYHVPILAICRGSQIL
NVAAGGKLHADIHTAVAHADKHIDYANYDAHRHPLFIRAHTPLFDWFRRR
TISVNSYHHQGIHTLAPRFEPMAHSPDGLVEAFYEPAQYDPPNGRFRVGL
QFHPERMQNVRRALDDQPPRFDYAGCPLPYKMLVTAARAYARRVHAVAAL
HAPLRAPAKAPPPPLPAAARLASLLRHAPQRRYSKEHVQRIVRSGATVHG
GTFLLRILAEERHELDRLSGLNLAGVCARARACPRVDERSSSPAVFAVAD
W*
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mRNA from alignment at tig00000844_pilon:92849..93904+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1439.t1 ID=Ggra1439.t1|Name=Ggra1439.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000844_pilon:92849..93904+ (Gracilaria gracilis GNS1m male)
ATGCTGCTGCAAAACCACGCGCAGCCGGTGATCCTGCCGCGAACGCCGCC
GCTCAGCAAGCTGCTGCACGCCTACCGCCCCATCCACGGCATCCTGCTCA
TCGAGGGCGAGGACATTGCCGACAAGTATCATCCGTTCGCCGCCCCGCTC
ACCCCGGCGCAGGCCGAGCGCGTGCGCCAGCACCACGCGTCCGACACCAC
GCCCGACCACCAGCGCGACAGCATCGAGTTCCAGCTGGTGCAGCACGCGC
TGCGCTACCACGTGCCCATCCTGGCCATCTGCCGCGGCTCGCAGATCCTC
AACGTCGCCGCGGGCGGCAAGCTGCACGCCGACATCCACACCGCCGTCGC
CCACGCCGACAAGCACATCGACTACGCCAACTACGACGCCCACCGCCACC
CGCTCTTCATCCGCGCGCACACGCCGCTGTTCGACTGGTTCCGCCGCCGC
ACCATCTCCGTCAACAGCTACCACCACCAGGGCATCCACACGCTGGCGCC
GCGCTTCGAGCCCATGGCGCACTCGCCCGACGGCTTGGTGGAGGCCTTCT
ACGAACCGGCGCAGTACGACCCGCCCAACGGCCGCTTCCGCGTCGGGCTA
CAGTTCCACCCCGAGCGCATGCAAAACGTGCGCCGCGCGCTGGACGACCA
GCCGCCGCGCTTCGACTACGCCGGCTGCCCGCTGCCGTACAAGATGCTGG
TCACTGCGGCGCGCGCGTAcgcgcgccgcgtgcacgccgtcgccgcgttg
cacgcgccgctgcgcgcgccggcaaaggcgccgccgccgccgctgcccgc
cgccgccaggctggcgtcgctgctgcgccacgcgccgcagcgccgcTACT
CCAAGGAGCACGTGCAGCGCATCGTCAGGTCGGGCGCCACCGTGCACGGC
GGCACCTTCCTGCTGCGCATTTTGGCCGAGGAGCGCCACGAGCTGGACCG
CCTGAGCGGGCTCAACCTGGCCGGCGTGTGCGCGCGTGCGCGCGCGTGTC
CGCGCGTCGACGAGCGCTCCTCGTCGCCCGCTGTTTTTGCCGTCGCCGAT
TGGTAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:92849..93904+

>Ggra1439.t1 ID=Ggra1439.t1|Name=Ggra1439.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00000844_pilon:92849..93904+ (Gracilaria gracilis GNS1m male)
ATGCTGCTGCAAAACCACGCGCAGCCGGTGATCCTGCCGCGAACGCCGCC
GCTCAGCAAGCTGCTGCACGCCTACCGCCCCATCCACGGCATCCTGCTCA
TCGAGGGCGAGGACATTGCCGACAAGTATCATCCGTTCGCCGCCCCGCTC
ACCCCGGCGCAGGCCGAGCGCGTGCGCCAGCACCACGCGTCCGACACCAC
GCCCGACCACCAGCGCGACAGCATCGAGTTCCAGCTGGTGCAGCACGCGC
TGCGCTACCACGTGCCCATCCTGGCCATCTGCCGCGGCTCGCAGATCCTC
AACGTCGCCGCGGGCGGCAAGCTGCACGCCGACATCCACACCGCCGTCGC
CCACGCCGACAAGCACATCGACTACGCCAACTACGACGCCCACCGCCACC
CGCTCTTCATCCGCGCGCACACGCCGCTGTTCGACTGGTTCCGCCGCCGC
ACCATCTCCGTCAACAGCTACCACCACCAGGGCATCCACACGCTGGCGCC
GCGCTTCGAGCCCATGGCGCACTCGCCCGACGGCTTGGTGGAGGCCTTCT
ACGAACCGGCGCAGTACGACCCGCCCAACGGCCGCTTCCGCGTCGGGCTA
CAGTTCCACCCCGAGCGCATGCAAAACGTGCGCCGCGCGCTGGACGACCA
GCCGCCGCGCTTCGACTACGCCGGCTGCCCGCTGCCGTACAAGATGCTGG
TCACTGCGGCGCGCGCGTAcgcgcgccgcgtgcacgccgtcgccgcgttg
cacgcgccgctgcgcgcgccggcaaaggcgccgccgccgccgctgcccgc
cgccgccaggctggcgtcgctgctgcgccacgcgccgcagcgccgcTACT
CCAAGGAGCACGTGCAGCGCATCGTCAGGTCGGGCGCCACCGTGCACGGC
GGCACCTTCCTGCTGCGCATTTTGGCCGAGGAGCGCCACGAGCTGGACCG
CCTGAGCGGGCTCAACCTGGCCGGCGTGTGCGCGCGTGCGCGCGCGTGTC
CGCGCGTCGACGAGCGCTCCTCGTCGCCCGCTGTTTTTGCCGTCGCCGAT
TGGTAG
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