Ggra1438.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1438.t1
Unique NameGgra1438.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length459
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:90651..92027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7897.ENSLACP00000010404
PFAMsDEP,DUF547,Glutaredoxin
Max annot lvl33208|Metazoa
Evalue1.56e-48
EggNOG OGs28JT7@1|root,2QS72@2759|Eukaryota,38H0G@33154|Opisthokonta,3BGN4@33208|Metazoa,3CYUK@33213|Bilateria,481G5@7711|Chordata,4994G@7742|Vertebrata
DescriptionProtein of unknown function, DUF547
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1438Ggra1438Gracilaria gracilis GNS1m malegenetig00000844_pilon 90651..92027 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1438.t1.stop1Ggra1438.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 90651..90653 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1438.t1.CDS1Ggra1438.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 90651..92027 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1438.t1.exon1Ggra1438.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 90651..92027 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1438.t1.start1Ggra1438.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 92025..92027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1438.t1Ggra1438.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 90651..92027 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1438.t1 ID=Ggra1438.t1|Name=Ggra1438.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=459bp
MTHGTPQQPPPPQQPPAAQSFSSRDQRLPPSPPLPPPPESAPSALMAAMR
TRYRHAVATLFGTRPRVLNSPCFLSAALLQRATPRSPRSSPPPPPPPRTR
SRKRRAPPSPDHAPVRKRARAAPPPPQPSQPADQVVPSRAAADADADADA
AAERRCPELIRSQPRCADALHCSCADSMWNARGIGPQLMLRTAEELSERI
IKLYGRAIDVRTNEVHYASLQNSRDFHHYLVSACKLRYFNPALLADVDRK
AFFLNVYNSLMIHAVAVMSRPRSKYERISLFNVAAYNIGGRLYSLNMIEH
GILRSNRPGCGPFAQPTFSDNDARLQCVLPHIDPRIHFALNCGARSCPAV
RFYTASTLDSTLQIATTSYLQDVQVDHQQRTVTLPKLFQWYKRDFSSNAD
LDEVVEWTLPYLDSEKRQNIDALLRDKKEHARPFKIQFAEYDWTINDISV
NDTSVANS*
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spliced messenger RNA

>Ggra1438.t1 ID=Ggra1438.t1|Name=Ggra1438.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00000844_pilon:90651..92027- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCACGGCACGCCGCAGCAGCCGCCGCCGCCGCAGCAGCCGCCCGC
CGCGCAGTCGTTCTCGTCGCGCGACCAGCGGCTGCCGCCGTCGCCGCCGC
TGCCGCCGCCGCCCGAGTCGGCGCCGTCCGCGCTCATGGCCGCCATGCGC
ACGCGCTACCGCCACGCAGTGGCCACGCTATTCGGCACGCGTCCGCGCGT
GCTCAACTCGCCGTGCTTCCTGTCCGCCGCGCTGCTGCAGCGCGCCACGC
CGCGCTCGCCGCGCTCGTCGCCGCCGCCGCCGCCGCCGCCGCGCACGCGC
TCGCGCAAGCGCCGCGCGCCGCCGTCGCCCGACCACGCGCCCGTGCGCAA
GCGCGCGCGCGCCGCGCCGCCGCCGCCACAGCCGTCGCAGCCCGCCGACC
AGGTCGTGCCGTCGCGCGCCGCCGCTGACGCCGACGCCGACGCTGACGCC
GCCGCGGAGCGCCGTTGCCCGGAGCTCATTCGCTCGCAGCCGCGGTGCGC
CGACGCGCTGCACTGCTCGTGCGCCGACTCCATGTGGAACGCGCGCGGCA
TTGGGCCGCAGCTCATGTTGCGCACGGCGGAGGAGTTGAGCGAGCGCATC
ATCAAGTTGTACGGCCGCGCTATTGACGTGCGCACCAACGAGGTGCACTA
CGCGTCGTTGCAAAACTCGCGCGACTTTCATCACTACTTGGTTTCCGCCT
GCAAGCTGCGCTACTTTAACCCCGCGCTGCTGGCCGACGTCGACCGCAAG
GCCTTCTTCCTCAATGTGTACAACAGTCTCATGATTCATGCTGTCGCAGT
CATGTCGCGCCCTCGCTCAAAGTATGAACGCATCTCGCTTTTCAACGTCG
CCGCCTACAATATTGGCGGCCGCCTCTATTCGTTGAACATGATTGAGCAC
GGCATTCTTCGCAGTAATCGCCCGGGTTGTGGCCCGTTTGCCCAGCCCAC
CTTCTCGGACAACGACGCCCGACTGCAGTGCGTCTTGCCGCACATCGACC
CGCGTATCCATTTTGCACTCAACTGCGGCGCCAGAAGCTGCCCAGCCGTT
CGCTTCTACACCGCCAGTACCCTCGACTCCACTCTGCAAATCGCTACTAC
CAGCTACTTGCAGGACGTTCAAGTCGACCATCAGCAGCGAACTGTCACTT
TGCCAAAGCTCTTCCAATGGTACAAGCGAGATTTTAGCTCCAACGCAGAT
CTGGACGAGGTTGTGGAGTGGACATTACCCTATCTGGACTCGGAGAAGCG
ACAGAATATCGATGCACTGCTTCGCGATAAGAAGGAACATGCTCGTCCTT
TCAAAATCCAGTTTGCAGAGTACGATTGGACCATCAACGACATATCTGTC
AACGACACATCTGTCGCTAACTCATAA
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protein sequence of Ggra1438.t1

>Ggra1438.t1 ID=Ggra1438.t1|Name=Ggra1438.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=459bp
MTHGTPQQPPPPQQPPAAQSFSSRDQRLPPSPPLPPPPESAPSALMAAMR
TRYRHAVATLFGTRPRVLNSPCFLSAALLQRATPRSPRSSPPPPPPPRTR
SRKRRAPPSPDHAPVRKRARAAPPPPQPSQPADQVVPSRAAADADADADA
AAERRCPELIRSQPRCADALHCSCADSMWNARGIGPQLMLRTAEELSERI
IKLYGRAIDVRTNEVHYASLQNSRDFHHYLVSACKLRYFNPALLADVDRK
AFFLNVYNSLMIHAVAVMSRPRSKYERISLFNVAAYNIGGRLYSLNMIEH
GILRSNRPGCGPFAQPTFSDNDARLQCVLPHIDPRIHFALNCGARSCPAV
RFYTASTLDSTLQIATTSYLQDVQVDHQQRTVTLPKLFQWYKRDFSSNAD
LDEVVEWTLPYLDSEKRQNIDALLRDKKEHARPFKIQFAEYDWTINDISV
NDTSVANS*
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mRNA from alignment at tig00000844_pilon:90651..92027-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1438.t1 ID=Ggra1438.t1|Name=Ggra1438.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00000844_pilon:90651..92027- (Gracilaria gracilis GNS1m male)
ATGACTCACGGCACGCCGCAGCAGCCGCCGCCGCCGCAGCAGCCGCCCGC
CGCGCAGTCGTTCTCGTCGCGCGACCAGCGGCTGCCGCCGTCGCCGCCGC
TGCCGCCGCCGCCCGAGTCGGCGCCGTCCGCGCTCATGGCCGCCATGCGC
ACGCGCTACCGCCACGCAGTGGCCACGCTATTCGGCACGCGTCCGCGCGT
GCTCAACTCGCCGTGCTTCCTGTCCGCCGCGCTGCTGCAGCGCGCCACGC
CGCGCTCGCCGCGCTCGTCGCCGCCGCCGCCGCCGCCGCCGCGCACGCGC
TCGCGCAAGCGCCGCGCGCCGCCGTCGCCCGACCACGCGCCCGTGCGCAA
GCGCGCGCGCGCCGCGCCGCCGCCGCCACAGCCGTCGCAGCCCGCCGACC
AGGTCGTGCCGTCGCGCGCCGCCGCTGACGCCGACGCCGACGCTGACGCC
GCCGCGGAGCGCCGTTGCCCGGAGCTCATTCGCTCGCAGCCGCGGTGCGC
CGACGCGCTGCACTGCTCGTGCGCCGACTCCATGTGGAACGCGCGCGGCA
TTGGGCCGCAGCTCATGTTGCGCACGGCGGAGGAGTTGAGCGAGCGCATC
ATCAAGTTGTACGGCCGCGCTATTGACGTGCGCACCAACGAGGTGCACTA
CGCGTCGTTGCAAAACTCGCGCGACTTTCATCACTACTTGGTTTCCGCCT
GCAAGCTGCGCTACTTTAACCCCGCGCTGCTGGCCGACGTCGACCGCAAG
GCCTTCTTCCTCAATGTGTACAACAGTCTCATGATTCATGCTGTCGCAGT
CATGTCGCGCCCTCGCTCAAAGTATGAACGCATCTCGCTTTTCAACGTCG
CCGCCTACAATATTGGCGGCCGCCTCTATTCGTTGAACATGATTGAGCAC
GGCATTCTTCGCAGTAATCGCCCGGGTTGTGGCCCGTTTGCCCAGCCCAC
CTTCTCGGACAACGACGCCCGACTGCAGTGCGTCTTGCCGCACATCGACC
CGCGTATCCATTTTGCACTCAACTGCGGCGCCAGAAGCTGCCCAGCCGTT
CGCTTCTACACCGCCAGTACCCTCGACTCCACTCTGCAAATCGCTACTAC
CAGCTACTTGCAGGACGTTCAAGTCGACCATCAGCAGCGAACTGTCACTT
TGCCAAAGCTCTTCCAATGGTACAAGCGAGATTTTAGCTCCAACGCAGAT
CTGGACGAGGTTGTGGAGTGGACATTACCCTATCTGGACTCGGAGAAGCG
ACAGAATATCGATGCACTGCTTCGCGATAAGAAGGAACATGCTCGTCCTT
TCAAAATCCAGTTTGCAGAGTACGATTGGACCATCAACGACATATCTGTC
AACGACACATCTGTCGCTAACTCATAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:90651..92027-

>Ggra1438.t1 ID=Ggra1438.t1|Name=Ggra1438.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1377bp|location=Sequence derived from alignment at tig00000844_pilon:90651..92027- (Gracilaria gracilis GNS1m male)
ATGACTCACGGCACGCCGCAGCAGCCGCCGCCGCCGCAGCAGCCGCCCGC
CGCGCAGTCGTTCTCGTCGCGCGACCAGCGGCTGCCGCCGTCGCCGCCGC
TGCCGCCGCCGCCCGAGTCGGCGCCGTCCGCGCTCATGGCCGCCATGCGC
ACGCGCTACCGCCACGCAGTGGCCACGCTATTCGGCACGCGTCCGCGCGT
GCTCAACTCGCCGTGCTTCCTGTCCGCCGCGCTGCTGCAGCGCGCCACGC
CGCGCTCGCCGCGCTCGTCGCCGCCGCCGCCGCCGCCGCCGCGCACGCGC
TCGCGCAAGCGCCGCGCGCCGCCGTCGCCCGACCACGCGCCCGTGCGCAA
GCGCGCGCGCGCCGCGCCGCCGCCGCCACAGCCGTCGCAGCCCGCCGACC
AGGTCGTGCCGTCGCGCGCCGCCGCTGACGCCGACGCCGACGCTGACGCC
GCCGCGGAGCGCCGTTGCCCGGAGCTCATTCGCTCGCAGCCGCGGTGCGC
CGACGCGCTGCACTGCTCGTGCGCCGACTCCATGTGGAACGCGCGCGGCA
TTGGGCCGCAGCTCATGTTGCGCACGGCGGAGGAGTTGAGCGAGCGCATC
ATCAAGTTGTACGGCCGCGCTATTGACGTGCGCACCAACGAGGTGCACTA
CGCGTCGTTGCAAAACTCGCGCGACTTTCATCACTACTTGGTTTCCGCCT
GCAAGCTGCGCTACTTTAACCCCGCGCTGCTGGCCGACGTCGACCGCAAG
GCCTTCTTCCTCAATGTGTACAACAGTCTCATGATTCATGCTGTCGCAGT
CATGTCGCGCCCTCGCTCAAAGTATGAACGCATCTCGCTTTTCAACGTCG
CCGCCTACAATATTGGCGGCCGCCTCTATTCGTTGAACATGATTGAGCAC
GGCATTCTTCGCAGTAATCGCCCGGGTTGTGGCCCGTTTGCCCAGCCCAC
CTTCTCGGACAACGACGCCCGACTGCAGTGCGTCTTGCCGCACATCGACC
CGCGTATCCATTTTGCACTCAACTGCGGCGCCAGAAGCTGCCCAGCCGTT
CGCTTCTACACCGCCAGTACCCTCGACTCCACTCTGCAAATCGCTACTAC
CAGCTACTTGCAGGACGTTCAAGTCGACCATCAGCAGCGAACTGTCACTT
TGCCAAAGCTCTTCCAATGGTACAAGCGAGATTTTAGCTCCAACGCAGAT
CTGGACGAGGTTGTGGAGTGGACATTACCCTATCTGGACTCGGAGAAGCG
ACAGAATATCGATGCACTGCTTCGCGATAAGAAGGAACATGCTCGTCCTT
TCAAAATCCAGTTTGCAGAGTACGATTGGACCATCAACGACATATCTGTC
AACGACACATCTGTCGCTAACTCATAA
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