Ggra1437.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1437.t1
Unique NameGgra1437.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:88330..89737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008606125.1
PFAMsPH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04371
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00687
Evalue9.54e-125
EggNOG OGsKOG0660@1|root,KOG0660@2759|Eukaryota
EC2.7.11.24
DescriptionMAP kinase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1437Ggra1437Gracilaria gracilis GNS1m malegenetig00000844_pilon 88330..89737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1437.t1Ggra1437.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 88330..89737 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1437.t1.stop1Ggra1437.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 88330..88332 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1437.t1.CDS1Ggra1437.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 88330..89032 -
Ggra1437.t1.CDS2Ggra1437.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 89144..89325 -
Ggra1437.t1.CDS3Ggra1437.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000844_pilon 89435..89737 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1437.t1.exon1Ggra1437.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 88330..89032 -
Ggra1437.t1.exon2Ggra1437.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 89144..89325 -
Ggra1437.t1.exon3Ggra1437.t1.exon3Gracilaria gracilis GNS1m maleexontig00000844_pilon 89435..89737 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1437.t1.intron1Ggra1437.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 89033..89143 -
Ggra1437.t1.intron2Ggra1437.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000844_pilon 89326..89434 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1437.t1.start1Ggra1437.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 89735..89737 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1437.t1 ID=Ggra1437.t1|Name=Ggra1437.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=396bp
MAEATTGQQRSTTANAVHEVVSPTPGTRCYEIQGTSFIVDEKYQVLRAVG
IGAYGIVTAAIDTETDQRVAMKKVSGVFDNLTDAKRILREIRLMRALEHD
NLLKLYDLQAPATLESFNEVYMASPLYDKDLAKVLESKVELSDEHNQYFV
YQMLCALKYLHSASVMHRDLKPANILIQESCDLSICDFGLARYVEDTDEG
QQGMTEYVVTRWYRAPELVLTNEYTNAVDLWAVGCIIGDLLGRKVLFPGR
DFKHQVEIICEILGKPSEEDIKHVTSSRARKFLSKLPESSSVDFSVMFPN
ANPDAIDLMEKLLKFNPSKRLTAEEALEHPYVKEFHDVEFEVCATDQIDM
SEIEPRVESGKALSKDDLRRMMVGEIYHFRPDAEIFKNNPDLIPN*
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spliced messenger RNA

>Ggra1437.t1 ID=Ggra1437.t1|Name=Ggra1437.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000844_pilon:88330..89737- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAGGCTACAACTGGTCAACAACGCAGCACAACAGCGAACGCTGT
TCACGAAGTTGTGTCCCCTACCCCAGGAACAAGATGTTACGAGATTCAGG
GCACATCATTCATCGTTGACGAAAAGTACCAAGTTCTTAGAGCTGTGGGT
ATCGGAGCCTATGGAATCGTTACTGCCGCAATTGACACAGAAACGGACCA
GAGAGTGGCTATGAAAAAAGTATCCGGCGTATTCGATAACTTGACTGATG
CAAAGCGAATTCTCCGCGAAATCCGTCTGATGCGTGCTTTGGAGCATGAC
AACCTTTTGAAACTATATGACCTACAGGCTCCGGCGACGCTCGAAAGTTT
TAACGAGGTTTATATGGCTAGTCCTCTTTATGACAAAGACCTGGCCAAAG
TTCTTGAATCAAAAGTTGAGCTTTCGGATGAACACAACCAATACTTTGTG
TATCAGATGCTGTGTGCTCTGAAATATCTGCACAGTGCTTCAGTCATGCA
CCGCGATTTGAAACCAGCCAACATTCTTATTCAAGAATCATGCGACCTTT
CCATTTGTGACTTTGGCCTTGCGCGCTACGTGGAGGACACTGACGAAGGT
CAACAGGGGATGACGGAATACGTTGTGACTCGTTGGTATCGAGCTCCAGA
GCTAGTTCTGACAAACGAGTACACAAATGCAGTTGATCTGTGGGCGGTGG
GGTGCATTATTGGAGATCTGCTGGGTCGCAAGGTGCTGTTTCCTGGAAGG
GACTTTAAACATCAGGTTGAGATAATCTGCGAAATCCTGGGGAAACCATC
CGAAGAGGATATCAAACACGTGACATCATCGAGGGCCCGAAAATTCTTGA
GCAAGCTTCCAGAATCAAGCAGCGTGGATTTCTCTGTCATGTTTCCCAAC
GCAAACCCAGATGCAATTGATCTAATGGAAAAGCTTCTCAAGTTCAACCC
CAGCAAGCGGTTGACAGCGGAAGAAGCGTTAGAACACCCATATGTGAAAG
AGTTTCATGATGTAGAGTTTGAGGTTTGTGCAACCGACCAAATTGACATG
AGCGAGATAGAACCGCGGGTTGAAAGCGGAAAGGCTCTTTCGAAAGACGA
TTTAAGACGAATGATGGTTGGGGAAATTTATCACTTTCGACCCGATGCAG
AGATCTTCAAGAACAATCCAGACCTGATACCAAACTAG
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protein sequence of Ggra1437.t1

>Ggra1437.t1 ID=Ggra1437.t1|Name=Ggra1437.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=396bp
MAEATTGQQRSTTANAVHEVVSPTPGTRCYEIQGTSFIVDEKYQVLRAVG
IGAYGIVTAAIDTETDQRVAMKKVSGVFDNLTDAKRILREIRLMRALEHD
NLLKLYDLQAPATLESFNEVYMASPLYDKDLAKVLESKVELSDEHNQYFV
YQMLCALKYLHSASVMHRDLKPANILIQESCDLSICDFGLARYVEDTDEG
QQGMTEYVVTRWYRAPELVLTNEYTNAVDLWAVGCIIGDLLGRKVLFPGR
DFKHQVEIICEILGKPSEEDIKHVTSSRARKFLSKLPESSSVDFSVMFPN
ANPDAIDLMEKLLKFNPSKRLTAEEALEHPYVKEFHDVEFEVCATDQIDM
SEIEPRVESGKALSKDDLRRMMVGEIYHFRPDAEIFKNNPDLIPN*
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mRNA from alignment at tig00000844_pilon:88330..89737-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1437.t1 ID=Ggra1437.t1|Name=Ggra1437.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1408bp|location=Sequence derived from alignment at tig00000844_pilon:88330..89737- (Gracilaria gracilis GNS1m male)
ATGGCGGAGGCTACAACTGGTCAACAACGCAGCACAACAGCGAACGCTGT
TCACGAAGTTGTGTCCCCTACCCCAGGAACAAGATGTTACGAGATTCAGG
GCACATCATTCATCGTTGACGAAAAGTACCAAGTTCTTAGAGCTGTGGGT
ATCGGAGCCTATGGAATCGTTACTGCCGCAATTGACACAGAAACGGACCA
GAGAGTGGCTATGAAAAAAGTATCCGGCGTATTCGATAACTTGACTGATG
CAAAGCGAATTCTCCGCGAAATCCGTCTGATGCGTGCTTTGGAGCATGAC
AACGTACGTATTGCAATACATGCTCATCATGGAATGAAAGTAGTATGACA
CTTAATCTGACACACAAATGAATTACATCTTTGAACATCTATCGACGGGT
CTTCTTACAAAGCTTTTGAAACTATATGACCTACAGGCTCCGGCGACGCT
CGAAAGTTTTAACGAGGTTTATATGGCTAGTCCTCTTTATGACAAAGACC
TGGCCAAAGTTCTTGAATCAAAAGTTGAGCTTTCGGATGAACACAACCAA
TACTTTGTGTATCAGATGCTGTGTGCTCTGAAATATCTGCACAGGTAAGC
ATATCTGTAGCACTTCACCATCGCCAACTTCTTCTTATCTCACAGCAGTT
TCTAACTTTGTCATTGACACATTGCATCATACTATCTTCACGTTCACGAT
TACAGTGCTTCAGTCATGCACCGCGATTTGAAACCAGCCAACATTCTTAT
TCAAGAATCATGCGACCTTTCCATTTGTGACTTTGGCCTTGCGCGCTACG
TGGAGGACACTGACGAAGGTCAACAGGGGATGACGGAATACGTTGTGACT
CGTTGGTATCGAGCTCCAGAGCTAGTTCTGACAAACGAGTACACAAATGC
AGTTGATCTGTGGGCGGTGGGGTGCATTATTGGAGATCTGCTGGGTCGCA
AGGTGCTGTTTCCTGGAAGGGACTTTAAACATCAGGTTGAGATAATCTGC
GAAATCCTGGGGAAACCATCCGAAGAGGATATCAAACACGTGACATCATC
GAGGGCCCGAAAATTCTTGAGCAAGCTTCCAGAATCAAGCAGCGTGGATT
TCTCTGTCATGTTTCCCAACGCAAACCCAGATGCAATTGATCTAATGGAA
AAGCTTCTCAAGTTCAACCCCAGCAAGCGGTTGACAGCGGAAGAAGCGTT
AGAACACCCATATGTGAAAGAGTTTCATGATGTAGAGTTTGAGGTTTGTG
CAACCGACCAAATTGACATGAGCGAGATAGAACCGCGGGTTGAAAGCGGA
AAGGCTCTTTCGAAAGACGATTTAAGACGAATGATGGTTGGGGAAATTTA
TCACTTTCGACCCGATGCAGAGATCTTCAAGAACAATCCAGACCTGATAC
CAAACTAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:88330..89737-

>Ggra1437.t1 ID=Ggra1437.t1|Name=Ggra1437.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1188bp|location=Sequence derived from alignment at tig00000844_pilon:88330..89737- (Gracilaria gracilis GNS1m male)
ATGGCGGAGGCTACAACTGGTCAACAACGCAGCACAACAGCGAACGCTGT
TCACGAAGTTGTGTCCCCTACCCCAGGAACAAGATGTTACGAGATTCAGG
GCACATCATTCATCGTTGACGAAAAGTACCAAGTTCTTAGAGCTGTGGGT
ATCGGAGCCTATGGAATCGTTACTGCCGCAATTGACACAGAAACGGACCA
GAGAGTGGCTATGAAAAAAGTATCCGGCGTATTCGATAACTTGACTGATG
CAAAGCGAATTCTCCGCGAAATCCGTCTGATGCGTGCTTTGGAGCATGAC
AACCTTTTGAAACTATATGACCTACAGGCTCCGGCGACGCTCGAAAGTTT
TAACGAGGTTTATATGGCTAGTCCTCTTTATGACAAAGACCTGGCCAAAG
TTCTTGAATCAAAAGTTGAGCTTTCGGATGAACACAACCAATACTTTGTG
TATCAGATGCTGTGTGCTCTGAAATATCTGCACAGTGCTTCAGTCATGCA
CCGCGATTTGAAACCAGCCAACATTCTTATTCAAGAATCATGCGACCTTT
CCATTTGTGACTTTGGCCTTGCGCGCTACGTGGAGGACACTGACGAAGGT
CAACAGGGGATGACGGAATACGTTGTGACTCGTTGGTATCGAGCTCCAGA
GCTAGTTCTGACAAACGAGTACACAAATGCAGTTGATCTGTGGGCGGTGG
GGTGCATTATTGGAGATCTGCTGGGTCGCAAGGTGCTGTTTCCTGGAAGG
GACTTTAAACATCAGGTTGAGATAATCTGCGAAATCCTGGGGAAACCATC
CGAAGAGGATATCAAACACGTGACATCATCGAGGGCCCGAAAATTCTTGA
GCAAGCTTCCAGAATCAAGCAGCGTGGATTTCTCTGTCATGTTTCCCAAC
GCAAACCCAGATGCAATTGATCTAATGGAAAAGCTTCTCAAGTTCAACCC
CAGCAAGCGGTTGACAGCGGAAGAAGCGTTAGAACACCCATATGTGAAAG
AGTTTCATGATGTAGAGTTTGAGGTTTGTGCAACCGACCAAATTGACATG
AGCGAGATAGAACCGCGGGTTGAAAGCGGAAAGGCTCTTTCGAAAGACGA
TTTAAGACGAATGATGGTTGGGGAAATTTATCACTTTCGACCCGATGCAG
AGATCTTCAAGAACAATCCAGACCTGATACCAAACTAG
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