Ggra1436.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1436.t1
Unique NameGgra1436.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length604
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:85716..87620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FKC6
Preferred nameMIC60
PFAMsMitofilin
Max annot lvl2759|Eukaryota
KEGG koko:K17785
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0030061,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042407,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044284,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0061617,GO:0065002,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0098573,GO:0098796,GO:0098798,GO:0098800,GO:1990542
Evalue2.46e-12
EggNOG OGsKOG1854@1|root,KOG1854@2759|Eukaryota
Descriptioncristae formation
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1436Ggra1436Gracilaria gracilis GNS1m malegenetig00000844_pilon 85716..87620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1436.t1Ggra1436.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 85716..87620 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1436.t1.stop1Ggra1436.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 85716..85718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1436.t1.CDS1Ggra1436.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 85716..87502 -
Ggra1436.t1.CDS2Ggra1436.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 87596..87620 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1436.t1.exon1Ggra1436.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 85716..87502 -
Ggra1436.t1.exon2Ggra1436.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 87596..87620 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1436.t1.intron1Ggra1436.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 87503..87595 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1436.t1.start1Ggra1436.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 87618..87620 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1436.t1 ID=Ggra1436.t1|Name=Ggra1436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=604bp
MHKVYSEEEFRASVEKAFPPSAKLFSQLFDLLPKSLALPSLRIQPIPKET
ATKVSEEKKRSSDISAHPPTYESISPELPEPRSSEKEPQSDLKRKTDQHS
TAESETPADIFGDTKAPEPQASESTAEEAKPSITEGKTKISQPAIESPKV
EPVKKEPTSVPQALGFPAIESEDSSMGDEKASSGMQKDAPVRSAKGKLAR
LLGKGDFEAAKVNSPDLVDDSEYMKPNLGSAPSISIFDSIPSTPELPIAG
STKALTTKTSPEEHSMISEQHIDEVEALRSEIRSQLKWEAVRLQEAVRSQ
LVEDKKIAAKEVSVMAKKHSEELAKVREEAMTQAERILTDRTRKIKEEAD
QKRDQELSKMLAEKEVELRETLATEYAEVRRTETETRELALLAAEANVSA
MSDRFNALVEQTERAKEAARRASSAFMLQERIASSQPFGALLKDASGSEL
GELVSESVPLSAASKGVSSVDNLKHEFKRASRRGLSAALVPESKQGTIWG
HLLGSIFSRLKVPVDIRLASEEPPKTNEDRIRLAKNLLDEGNLGGAVATL
DSLVGLPGELMSDWLGDAKARIAAEQAAAVLLADAIIAQISLTKGEDIKT
IST*
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spliced messenger RNA

>Ggra1436.t1 ID=Ggra1436.t1|Name=Ggra1436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1812bp|location=Sequence derived from alignment at tig00000844_pilon:85716..87620- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAAAGTTTATTCCGAAGAAGAATTTCGAGCGTCAGTTGAAAAAGC
GTTCCCTCCGTCCGCAAAGCTGTTCTCGCAGCTCTTTGATCTTCTTCCGA
AATCACTAGCTCTTCCGTCGCTTCGCATTCAGCCAATTCCGAAGGAAACT
GCAACAAAAGTTAGCGAAGAGAAGAAAAGATCCAGTGACATCTCCGCCCA
TCCCCCGACATATGAGTCAATAAGCCCTGAACTGCCTGAACCTAGATCGT
CAGAGAAAGAACCCCAAAGTGATCTAAAGCGCAAAACGGATCAGCATTCA
ACCGCAGAGAGCGAAACGCCTGCGGACATCTTCGGCGACACCAAAGCTCC
AGAGCCTCAAGCCTCGGAGAGTACCGCAGAGGAGGCAAAGCCGTCCATCA
CTGAGGGGAAGACCAAAATATCTCAGCCGGCTATTGAATCGCCGAAAGTC
GAACCCGTGAAGAAGGAACCGACTTCAGTCCCACAAGCTCTCGGTTTTCC
CGCAATCGAAAGCGAAGACTCATCAATGGGCGACGAGAAGGCGAGCAGTG
GTATGCAAAAGGATGCACCAGTACGGAGTGCAAAGGGCAAATTGGCAAGG
CTGCTAGGCAAGGGCGACTTCGAAGCCGCGAAAGTCAATAGCCCAGATTT
GGTTGATGACTCGGAATATATGAAGCCGAATCTGGGATCCGCGCCGAGCA
TCAGTATCTTTGACTCTATTCCTTCAACTCCCGAGCTTCCTATTGCTGGA
TCGACCAAGGCACTGACCACCAAAACTAGTCCAGAGGAACATTCCATGAT
TAGCGAGCAGCATATAGATGAAGTAGAGGCACTTCGATCGGAAATTCGGA
GCCAGCTAAAATGGGAAGCCGTCCGACTTCAAGAAGCTGTTCGTTCGCAA
CTGGTTGAAGACAAGAAGATTGCCGCAAAAGAAGTATCTGTCATGGCAAA
GAAGCATTCCGAAGAGTTGGCGAAAGTTCGAGAAGAAGCAATGACACAGG
CTGAACGGATTCTAACTGACAGGACTAGGAAGATAAAAGAGGAGGCAGAC
CAGAAGAGAGATCAGGAGCTGAGTAAGATGCTGGCAGAAAAGGAAGTCGA
ACTTCGGGAAACGTTGGCAACAGAATATGCGGAAGTGCGGCGTACTGAGA
CAGAGACCAGAGAATTGGCTCTACTTGCGGCGGAAGCGAACGTTTCCGCT
ATGTCGGACAGGTTCAATGCGCTTGTTGAACAGACTGAAAGAGCTAAGGA
AGCTGCGCGACGCGCTAGTTCTGCGTTCATGCTGCAAGAGCGTATTGCAT
CTAGTCAGCCGTTTGGTGCGCTTCTCAAGGATGCCAGTGGAAGCGAACTT
GGAGAGCTGGTGTCAGAAAGCGTGCCCTTGTCCGCAGCGTCGAAGGGAGT
ATCTTCTGTTGACAATTTGAAGCATGAATTCAAGCGAGCGTCAAGGCGCG
GACTGAGCGCAGCCCTTGTTCCAGAAAGCAAGCAAGGGACTATTTGGGGA
CATTTATTAGGCTCCATCTTTTCCCGGCTAAAGGTTCCAGTCGATATTCG
CTTGGCGTCCGAAGAGCCACCGAAAACGAACGAAGATCGCATCCGATTAG
CGAAAAACTTGTTAGATGAAGGGAATTTGGGCGGAGCTGTTGCTACTCTC
GACTCACTCGTTGGTCTCCCGGGAGAATTGATGTCTGACTGGCTAGGTGA
TGCAAAGGCACGCATTGCCGCAGAACAAGCAGCTGCGGTGTTGCTCGCGG
ATGCTATTATCGCACAGATTTCGCTAACAAAAGGAGAAGATATCAAAACG
ATTTCGACCTAG
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protein sequence of Ggra1436.t1

>Ggra1436.t1 ID=Ggra1436.t1|Name=Ggra1436.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=604bp
MHKVYSEEEFRASVEKAFPPSAKLFSQLFDLLPKSLALPSLRIQPIPKET
ATKVSEEKKRSSDISAHPPTYESISPELPEPRSSEKEPQSDLKRKTDQHS
TAESETPADIFGDTKAPEPQASESTAEEAKPSITEGKTKISQPAIESPKV
EPVKKEPTSVPQALGFPAIESEDSSMGDEKASSGMQKDAPVRSAKGKLAR
LLGKGDFEAAKVNSPDLVDDSEYMKPNLGSAPSISIFDSIPSTPELPIAG
STKALTTKTSPEEHSMISEQHIDEVEALRSEIRSQLKWEAVRLQEAVRSQ
LVEDKKIAAKEVSVMAKKHSEELAKVREEAMTQAERILTDRTRKIKEEAD
QKRDQELSKMLAEKEVELRETLATEYAEVRRTETETRELALLAAEANVSA
MSDRFNALVEQTERAKEAARRASSAFMLQERIASSQPFGALLKDASGSEL
GELVSESVPLSAASKGVSSVDNLKHEFKRASRRGLSAALVPESKQGTIWG
HLLGSIFSRLKVPVDIRLASEEPPKTNEDRIRLAKNLLDEGNLGGAVATL
DSLVGLPGELMSDWLGDAKARIAAEQAAAVLLADAIIAQISLTKGEDIKT
IST*
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mRNA from alignment at tig00000844_pilon:85716..87620-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1436.t1 ID=Ggra1436.t1|Name=Ggra1436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1905bp|location=Sequence derived from alignment at tig00000844_pilon:85716..87620- (Gracilaria gracilis GNS1m male)
ATGCACAAAGTTTATTCCGAAGAAGGTGCGTTTGATGCTGATCATACCGT
GTAGAGTCCGTTTCCGATTGCGCTTTATACCAGTTTTGTTGATACTGACG
GGTCATCTTGTTGAGCAGAATTTCGAGCGTCAGTTGAAAAAGCGTTCCCT
CCGTCCGCAAAGCTGTTCTCGCAGCTCTTTGATCTTCTTCCGAAATCACT
AGCTCTTCCGTCGCTTCGCATTCAGCCAATTCCGAAGGAAACTGCAACAA
AAGTTAGCGAAGAGAAGAAAAGATCCAGTGACATCTCCGCCCATCCCCCG
ACATATGAGTCAATAAGCCCTGAACTGCCTGAACCTAGATCGTCAGAGAA
AGAACCCCAAAGTGATCTAAAGCGCAAAACGGATCAGCATTCAACCGCAG
AGAGCGAAACGCCTGCGGACATCTTCGGCGACACCAAAGCTCCAGAGCCT
CAAGCCTCGGAGAGTACCGCAGAGGAGGCAAAGCCGTCCATCACTGAGGG
GAAGACCAAAATATCTCAGCCGGCTATTGAATCGCCGAAAGTCGAACCCG
TGAAGAAGGAACCGACTTCAGTCCCACAAGCTCTCGGTTTTCCCGCAATC
GAAAGCGAAGACTCATCAATGGGCGACGAGAAGGCGAGCAGTGGTATGCA
AAAGGATGCACCAGTACGGAGTGCAAAGGGCAAATTGGCAAGGCTGCTAG
GCAAGGGCGACTTCGAAGCCGCGAAAGTCAATAGCCCAGATTTGGTTGAT
GACTCGGAATATATGAAGCCGAATCTGGGATCCGCGCCGAGCATCAGTAT
CTTTGACTCTATTCCTTCAACTCCCGAGCTTCCTATTGCTGGATCGACCA
AGGCACTGACCACCAAAACTAGTCCAGAGGAACATTCCATGATTAGCGAG
CAGCATATAGATGAAGTAGAGGCACTTCGATCGGAAATTCGGAGCCAGCT
AAAATGGGAAGCCGTCCGACTTCAAGAAGCTGTTCGTTCGCAACTGGTTG
AAGACAAGAAGATTGCCGCAAAAGAAGTATCTGTCATGGCAAAGAAGCAT
TCCGAAGAGTTGGCGAAAGTTCGAGAAGAAGCAATGACACAGGCTGAACG
GATTCTAACTGACAGGACTAGGAAGATAAAAGAGGAGGCAGACCAGAAGA
GAGATCAGGAGCTGAGTAAGATGCTGGCAGAAAAGGAAGTCGAACTTCGG
GAAACGTTGGCAACAGAATATGCGGAAGTGCGGCGTACTGAGACAGAGAC
CAGAGAATTGGCTCTACTTGCGGCGGAAGCGAACGTTTCCGCTATGTCGG
ACAGGTTCAATGCGCTTGTTGAACAGACTGAAAGAGCTAAGGAAGCTGCG
CGACGCGCTAGTTCTGCGTTCATGCTGCAAGAGCGTATTGCATCTAGTCA
GCCGTTTGGTGCGCTTCTCAAGGATGCCAGTGGAAGCGAACTTGGAGAGC
TGGTGTCAGAAAGCGTGCCCTTGTCCGCAGCGTCGAAGGGAGTATCTTCT
GTTGACAATTTGAAGCATGAATTCAAGCGAGCGTCAAGGCGCGGACTGAG
CGCAGCCCTTGTTCCAGAAAGCAAGCAAGGGACTATTTGGGGACATTTAT
TAGGCTCCATCTTTTCCCGGCTAAAGGTTCCAGTCGATATTCGCTTGGCG
TCCGAAGAGCCACCGAAAACGAACGAAGATCGCATCCGATTAGCGAAAAA
CTTGTTAGATGAAGGGAATTTGGGCGGAGCTGTTGCTACTCTCGACTCAC
TCGTTGGTCTCCCGGGAGAATTGATGTCTGACTGGCTAGGTGATGCAAAG
GCACGCATTGCCGCAGAACAAGCAGCTGCGGTGTTGCTCGCGGATGCTAT
TATCGCACAGATTTCGCTAACAAAAGGAGAAGATATCAAAACGATTTCGA
CCTAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:85716..87620-

>Ggra1436.t1 ID=Ggra1436.t1|Name=Ggra1436.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1812bp|location=Sequence derived from alignment at tig00000844_pilon:85716..87620- (Gracilaria gracilis GNS1m male)
ATGCACAAAGTTTATTCCGAAGAAGAATTTCGAGCGTCAGTTGAAAAAGC
GTTCCCTCCGTCCGCAAAGCTGTTCTCGCAGCTCTTTGATCTTCTTCCGA
AATCACTAGCTCTTCCGTCGCTTCGCATTCAGCCAATTCCGAAGGAAACT
GCAACAAAAGTTAGCGAAGAGAAGAAAAGATCCAGTGACATCTCCGCCCA
TCCCCCGACATATGAGTCAATAAGCCCTGAACTGCCTGAACCTAGATCGT
CAGAGAAAGAACCCCAAAGTGATCTAAAGCGCAAAACGGATCAGCATTCA
ACCGCAGAGAGCGAAACGCCTGCGGACATCTTCGGCGACACCAAAGCTCC
AGAGCCTCAAGCCTCGGAGAGTACCGCAGAGGAGGCAAAGCCGTCCATCA
CTGAGGGGAAGACCAAAATATCTCAGCCGGCTATTGAATCGCCGAAAGTC
GAACCCGTGAAGAAGGAACCGACTTCAGTCCCACAAGCTCTCGGTTTTCC
CGCAATCGAAAGCGAAGACTCATCAATGGGCGACGAGAAGGCGAGCAGTG
GTATGCAAAAGGATGCACCAGTACGGAGTGCAAAGGGCAAATTGGCAAGG
CTGCTAGGCAAGGGCGACTTCGAAGCCGCGAAAGTCAATAGCCCAGATTT
GGTTGATGACTCGGAATATATGAAGCCGAATCTGGGATCCGCGCCGAGCA
TCAGTATCTTTGACTCTATTCCTTCAACTCCCGAGCTTCCTATTGCTGGA
TCGACCAAGGCACTGACCACCAAAACTAGTCCAGAGGAACATTCCATGAT
TAGCGAGCAGCATATAGATGAAGTAGAGGCACTTCGATCGGAAATTCGGA
GCCAGCTAAAATGGGAAGCCGTCCGACTTCAAGAAGCTGTTCGTTCGCAA
CTGGTTGAAGACAAGAAGATTGCCGCAAAAGAAGTATCTGTCATGGCAAA
GAAGCATTCCGAAGAGTTGGCGAAAGTTCGAGAAGAAGCAATGACACAGG
CTGAACGGATTCTAACTGACAGGACTAGGAAGATAAAAGAGGAGGCAGAC
CAGAAGAGAGATCAGGAGCTGAGTAAGATGCTGGCAGAAAAGGAAGTCGA
ACTTCGGGAAACGTTGGCAACAGAATATGCGGAAGTGCGGCGTACTGAGA
CAGAGACCAGAGAATTGGCTCTACTTGCGGCGGAAGCGAACGTTTCCGCT
ATGTCGGACAGGTTCAATGCGCTTGTTGAACAGACTGAAAGAGCTAAGGA
AGCTGCGCGACGCGCTAGTTCTGCGTTCATGCTGCAAGAGCGTATTGCAT
CTAGTCAGCCGTTTGGTGCGCTTCTCAAGGATGCCAGTGGAAGCGAACTT
GGAGAGCTGGTGTCAGAAAGCGTGCCCTTGTCCGCAGCGTCGAAGGGAGT
ATCTTCTGTTGACAATTTGAAGCATGAATTCAAGCGAGCGTCAAGGCGCG
GACTGAGCGCAGCCCTTGTTCCAGAAAGCAAGCAAGGGACTATTTGGGGA
CATTTATTAGGCTCCATCTTTTCCCGGCTAAAGGTTCCAGTCGATATTCG
CTTGGCGTCCGAAGAGCCACCGAAAACGAACGAAGATCGCATCCGATTAG
CGAAAAACTTGTTAGATGAAGGGAATTTGGGCGGAGCTGTTGCTACTCTC
GACTCACTCGTTGGTCTCCCGGGAGAATTGATGTCTGACTGGCTAGGTGA
TGCAAAGGCACGCATTGCCGCAGAACAAGCAGCTGCGGTGTTGCTCGCGG
ATGCTATTATCGCACAGATTTCGCTAACAAAAGGAGAAGATATCAAAACG
ATTTCGACCTAG
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