Ggra1435.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1435.t1
Unique NameGgra1435.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length481
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:82027..83469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008804634.1
Max annot lvl35493|Streptophyta
Evalue6.72e-147
EggNOG OGs2CKYV@1|root,2QS54@2759|Eukaryota,37QD9@33090|Viridiplantae,3GG4G@35493|Streptophyta,3KS38@4447|Liliopsida
DescriptionTransducin WD40 repeat-like superfamily protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1435Ggra1435Gracilaria gracilis GNS1m malegenetig00000844_pilon 82027..83469 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1435.t1.stop1Ggra1435.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 82027..82029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1435.t1.CDS1Ggra1435.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 82027..83469 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1435.t1.exon1Ggra1435.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 82027..83469 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1435.t1.start1Ggra1435.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 83467..83469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1435.t1Ggra1435.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 82027..83469 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1435.t1 ID=Ggra1435.t1|Name=Ggra1435.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=481bp
MKPQTVPLANVSDASSSVITSSTTGKRTYADAAVRRHDSTDVLPLALQQS
ASLRKRHRRSVSRPSSSSVSRKLLRRELGEDMPSAHTSFVMQRFRNIQLQ
ATMDAHDADEMTPGLAWSRNRSKIVEIASSNDLVFGLTYNGVCAVFSREL
NQCICYMNVSDEEVIRSLFLNKTNDSLITVSVFKTDDFSSLHCRSTPLAH
IRIKYLKSGFKLFQSESLRYPGFVEFDDVNGKILTFSAVDQKYKVWDLNT
YKHLYTIHNERIHEVKISPGLMLLIHERQDVHVPIRIHDIETGAKLQEIN
HLVRRNRKIEFIEQFHDKLLVKQIHENLQIVDVCSGVRTEVERSRFLTPK
SFIFLHESEIFLTFENRRVNVWNFRGERIVTDFGDHVLYRSDSSNSLIYI
TQKQDIILSYCQNDAGKCSHGSINLSWIENGKLIEKISCKHIPDRKHVRA
LEDVSAVHYNEERSEIYSGTKNGLIHVWSN*
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spliced messenger RNA

>Ggra1435.t1 ID=Ggra1435.t1|Name=Ggra1435.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000844_pilon:82027..83469- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCTCAAACTGTACCGTTGGCCAATGTTTCTGACGCCTCATCGTC
GGTGATCACCTCCAGTACAACCGGCAAGCGCACCTATGCCGATGCCGCAG
TGCGACGCCATGACTCCACCGACGTGCTCCCGCTCGCGCTTCAGCAATCG
GCCTCCTTGCGAAAGCGACACCGCCGGAGCGTCTCCAGGCCCTCGTCGTC
TTCCGTTTCCAGAAAGCTTCTTCGCAGAGAGTTGGGAGAGGATATGCCCT
CCGCTCATACCAGTTTTGTCATGCAACGCTTTCGCAACATCCAACTGCAG
GCCACCATGGATGCTCATGATGCCGACGAGATGACTCCCGGCCTTGCGTG
GTCCAGGAACCGCTCCAAAATCGTCGAGATAGCCAGCAGCAACGACTTGG
TGTTTGGCTTGACCTACAACGGCGTCTGCGCCGTATTTTCGCGTGAGTTG
AACCAGTGCATATGCTACATGAACGTGTCGGATGAAGAGGTTATCCGATC
CTTGTTCCTCAACAAAACCAACGACAGCCTCATCACCGTATCCGTATTCA
AGACCGATGACTTTTCCTCCTTGCATTGCCGTTCAACCCCGCTGGCGCAT
ATTCGCATCAAGTACCTCAAATCTGGATTCAAGCTCTTCCAATCGGAGAG
CTTGCGCTACCCTGGCTTTGTGGAGTTTGACGACGTGAATGGCAAGATTC
TCACCTTCTCAGCCGTCGACCAAAAGTACAAGGTGTGGGACTTGAACACA
TACAAGCACTTGTACACCATCCACAATGAGCGAATCCACGAGGTCAAAAT
CTCACCCGGCTTGATGCTCCTCATCCACGAGCGACAGGACGTGCACGTTC
CCATCCGCATCCACGACATTGAGACCGGCGCCAAACTGCAAGAGATCAAC
CATCTCGTGCGTCGAAACCGAAAGATCGAGTTCATCGAACAGTTTCACGA
CAAGCTTTTGGTCAAGCAAATACACGAGAACCTGCAAATCGTTGACGTTT
GCTCCGGTGTACGCACGGAAGTAGAACGCAGTCGTTTCCTCACCCCAAAG
TCGTTCATTTTCTTGCACGAGAGTGAAATCTTCCTAACATTCGAGAACCG
ACGGGTGAACGTGTGGAACTTTAGGGGCGAGCGAATTGTGACCGACTTTG
GGGACCACGTGCTCTATCGTTCGGATTCGAGCAACAGTTTGATCTACATT
ACTCAAAAACAGGACATTATCTTATCATACTGCCAGAACGACGCTGGAAA
GTGTTCTCATGGCTCTATCAACTTGTCTTGGATTGAGAACGGAAAGCTAA
TTGAGAAGATTAGCTGCAAGCACATTCCGGACCGGAAGCACGTGCGCGCA
CTCGAAGACGTTTCTGCAGTGCACTACAATGAAGAAAGGTCGGAGATATA
CTCTGGTACAAAGAACGGGCTTATTCACGTGTGGTCAAACTGA
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protein sequence of Ggra1435.t1

>Ggra1435.t1 ID=Ggra1435.t1|Name=Ggra1435.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=481bp
MKPQTVPLANVSDASSSVITSSTTGKRTYADAAVRRHDSTDVLPLALQQS
ASLRKRHRRSVSRPSSSSVSRKLLRRELGEDMPSAHTSFVMQRFRNIQLQ
ATMDAHDADEMTPGLAWSRNRSKIVEIASSNDLVFGLTYNGVCAVFSREL
NQCICYMNVSDEEVIRSLFLNKTNDSLITVSVFKTDDFSSLHCRSTPLAH
IRIKYLKSGFKLFQSESLRYPGFVEFDDVNGKILTFSAVDQKYKVWDLNT
YKHLYTIHNERIHEVKISPGLMLLIHERQDVHVPIRIHDIETGAKLQEIN
HLVRRNRKIEFIEQFHDKLLVKQIHENLQIVDVCSGVRTEVERSRFLTPK
SFIFLHESEIFLTFENRRVNVWNFRGERIVTDFGDHVLYRSDSSNSLIYI
TQKQDIILSYCQNDAGKCSHGSINLSWIENGKLIEKISCKHIPDRKHVRA
LEDVSAVHYNEERSEIYSGTKNGLIHVWSN*
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mRNA from alignment at tig00000844_pilon:82027..83469-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1435.t1 ID=Ggra1435.t1|Name=Ggra1435.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000844_pilon:82027..83469- (Gracilaria gracilis GNS1m male)
ATGAAGCCTCAAACTGTACCGTTGGCCAATGTTTCTGACGCCTCATCGTC
GGTGATCACCTCCAGTACAACCGGCAAGCGCACCTATGCCGATGCCGCAG
TGCGACGCCATGACTCCACCGACGTGCTCCCGCTCGCGCTTCAGCAATCG
GCCTCCTTGCGAAAGCGACACCGCCGGAGCGTCTCCAGGCCCTCGTCGTC
TTCCGTTTCCAGAAAGCTTCTTCGCAGAGAGTTGGGAGAGGATATGCCCT
CCGCTCATACCAGTTTTGTCATGCAACGCTTTCGCAACATCCAACTGCAG
GCCACCATGGATGCTCATGATGCCGACGAGATGACTCCCGGCCTTGCGTG
GTCCAGGAACCGCTCCAAAATCGTCGAGATAGCCAGCAGCAACGACTTGG
TGTTTGGCTTGACCTACAACGGCGTCTGCGCCGTATTTTCGCGTGAGTTG
AACCAGTGCATATGCTACATGAACGTGTCGGATGAAGAGGTTATCCGATC
CTTGTTCCTCAACAAAACCAACGACAGCCTCATCACCGTATCCGTATTCA
AGACCGATGACTTTTCCTCCTTGCATTGCCGTTCAACCCCGCTGGCGCAT
ATTCGCATCAAGTACCTCAAATCTGGATTCAAGCTCTTCCAATCGGAGAG
CTTGCGCTACCCTGGCTTTGTGGAGTTTGACGACGTGAATGGCAAGATTC
TCACCTTCTCAGCCGTCGACCAAAAGTACAAGGTGTGGGACTTGAACACA
TACAAGCACTTGTACACCATCCACAATGAGCGAATCCACGAGGTCAAAAT
CTCACCCGGCTTGATGCTCCTCATCCACGAGCGACAGGACGTGCACGTTC
CCATCCGCATCCACGACATTGAGACCGGCGCCAAACTGCAAGAGATCAAC
CATCTCGTGCGTCGAAACCGAAAGATCGAGTTCATCGAACAGTTTCACGA
CAAGCTTTTGGTCAAGCAAATACACGAGAACCTGCAAATCGTTGACGTTT
GCTCCGGTGTACGCACGGAAGTAGAACGCAGTCGTTTCCTCACCCCAAAG
TCGTTCATTTTCTTGCACGAGAGTGAAATCTTCCTAACATTCGAGAACCG
ACGGGTGAACGTGTGGAACTTTAGGGGCGAGCGAATTGTGACCGACTTTG
GGGACCACGTGCTCTATCGTTCGGATTCGAGCAACAGTTTGATCTACATT
ACTCAAAAACAGGACATTATCTTATCATACTGCCAGAACGACGCTGGAAA
GTGTTCTCATGGCTCTATCAACTTGTCTTGGATTGAGAACGGAAAGCTAA
TTGAGAAGATTAGCTGCAAGCACATTCCGGACCGGAAGCACGTGCGCGCA
CTCGAAGACGTTTCTGCAGTGCACTACAATGAAGAAAGGTCGGAGATATA
CTCTGGTACAAAGAACGGGCTTATTCACGTGTGGTCAAACTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:82027..83469-

>Ggra1435.t1 ID=Ggra1435.t1|Name=Ggra1435.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1443bp|location=Sequence derived from alignment at tig00000844_pilon:82027..83469- (Gracilaria gracilis GNS1m male)
ATGAAGCCTCAAACTGTACCGTTGGCCAATGTTTCTGACGCCTCATCGTC
GGTGATCACCTCCAGTACAACCGGCAAGCGCACCTATGCCGATGCCGCAG
TGCGACGCCATGACTCCACCGACGTGCTCCCGCTCGCGCTTCAGCAATCG
GCCTCCTTGCGAAAGCGACACCGCCGGAGCGTCTCCAGGCCCTCGTCGTC
TTCCGTTTCCAGAAAGCTTCTTCGCAGAGAGTTGGGAGAGGATATGCCCT
CCGCTCATACCAGTTTTGTCATGCAACGCTTTCGCAACATCCAACTGCAG
GCCACCATGGATGCTCATGATGCCGACGAGATGACTCCCGGCCTTGCGTG
GTCCAGGAACCGCTCCAAAATCGTCGAGATAGCCAGCAGCAACGACTTGG
TGTTTGGCTTGACCTACAACGGCGTCTGCGCCGTATTTTCGCGTGAGTTG
AACCAGTGCATATGCTACATGAACGTGTCGGATGAAGAGGTTATCCGATC
CTTGTTCCTCAACAAAACCAACGACAGCCTCATCACCGTATCCGTATTCA
AGACCGATGACTTTTCCTCCTTGCATTGCCGTTCAACCCCGCTGGCGCAT
ATTCGCATCAAGTACCTCAAATCTGGATTCAAGCTCTTCCAATCGGAGAG
CTTGCGCTACCCTGGCTTTGTGGAGTTTGACGACGTGAATGGCAAGATTC
TCACCTTCTCAGCCGTCGACCAAAAGTACAAGGTGTGGGACTTGAACACA
TACAAGCACTTGTACACCATCCACAATGAGCGAATCCACGAGGTCAAAAT
CTCACCCGGCTTGATGCTCCTCATCCACGAGCGACAGGACGTGCACGTTC
CCATCCGCATCCACGACATTGAGACCGGCGCCAAACTGCAAGAGATCAAC
CATCTCGTGCGTCGAAACCGAAAGATCGAGTTCATCGAACAGTTTCACGA
CAAGCTTTTGGTCAAGCAAATACACGAGAACCTGCAAATCGTTGACGTTT
GCTCCGGTGTACGCACGGAAGTAGAACGCAGTCGTTTCCTCACCCCAAAG
TCGTTCATTTTCTTGCACGAGAGTGAAATCTTCCTAACATTCGAGAACCG
ACGGGTGAACGTGTGGAACTTTAGGGGCGAGCGAATTGTGACCGACTTTG
GGGACCACGTGCTCTATCGTTCGGATTCGAGCAACAGTTTGATCTACATT
ACTCAAAAACAGGACATTATCTTATCATACTGCCAGAACGACGCTGGAAA
GTGTTCTCATGGCTCTATCAACTTGTCTTGGATTGAGAACGGAAAGCTAA
TTGAGAAGATTAGCTGCAAGCACATTCCGGACCGGAAGCACGTGCGCGCA
CTCGAAGACGTTTCTGCAGTGCACTACAATGAAGAAAGGTCGGAGATATA
CTCTGGTACAAAGAACGGGCTTATTCACGTGTGGTCAAACTGA
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