Ggra1434.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1434.t1
Unique NameGgra1434.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:80600..81457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1434Ggra1434Gracilaria gracilis GNS1m malegenetig00000844_pilon 80600..81457 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1434.t1.start1Ggra1434.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 80600..80602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1434.t1.CDS1Ggra1434.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 80600..81457 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1434.t1.exon1Ggra1434.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 80600..81457 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1434.t1.stop1Ggra1434.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 81455..81457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1434.t1Ggra1434.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 80600..81457 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1434.t1 ID=Ggra1434.t1|Name=Ggra1434.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=286bp
MVDANFTDDWIDGAIPPHFPPVESFFDSELFCDENTIANLPDLPLTLPSS
PLLSMPVSLSPPPSPSFRSASHVLTVPLKIAPVSAQPISRPPQNPFSDEK
CPLRKRVKVTLRSSGPGRRVRIATPRKRRRLQTTLYVQNTSECTRLAIRV
PAPSSRNNSSVNSLSFSRRPLKLKPSNMSDPLFRRLQTVASSAPQAAKQP
DALPDITTALQGIAVTVHRFREMNGGAVVRPVPERKVRIQMGRKKKGKKR
TLLRFDDFKVAPLEPEDDTKPRQSGLYLYINSPYP*
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spliced messenger RNA

>Ggra1434.t1 ID=Ggra1434.t1|Name=Ggra1434.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000844_pilon:80600..81457+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGATGCAAACTTTACGGATGACTGGATCGATGGCGCCATCCCGCC
GCATTTCCCGCCGGTAGAGTCCTTCTTCGACTCTGAACTCTTCTGCGATG
AGAACACTATCGCTAATCTTCCTGACTTGCCACTAACTCTTCCATCCAGT
CCGCTCCTTTCCATGCCAGTCTCGCTCTCACCTCCCCCTTCTCCTTCCTT
CCGCTCTGCTTCACACGTGCTTACTGTCCCCCTCAAGATCGCTCCCGTCT
CGGCTCAACCAATCTCAAGACCGCCGCAAAACCCCTTCTCGGACGAAAAG
TGCCCGCTCCGCAAACGGGTAAAGGTCACACTCCGCTCCAGCGGGCCTGG
CCGCCGAGTTCGCATCGCCACCCCCCGCAAACGCCGTCGTCTGCAGACCA
CCTTGTACGTGCAGAACACATCGGAATGCACTCGTCTGGCCATTCGTGTT
CCGGCACCGTCTTCTCGAAACAACAGCTCCGTCAACAGCTTGTCGTTTTC
CAGACGTCCGCTCAAGCTCAAGCCAAGCAACATGTCTGATCCGCTTTTCC
GTCGCTTGCAGACTGTGGCATCGTCCGCGCCACAAGCCGCCAAACAGCCC
GATGCTTTGCCGGATATTACCACCGCTTTGCAGGGGATTGCCGTCACTGT
TCATCGATTCCGCGAGATGAACGGCGGCGCTGTGGTGCGCCCGGTGCCGG
AGAGAAAAGTTCGCATCCAGATGGGCAGAAAGAAGAAGGGAAAGAAAAGG
ACCTTGTTGAGATTCGACGACTTCAAGGTGGCTCCGTTGGAGCCAGAGGA
TGACACCAAGCCGCGTCAGAGCGGTTTGTACCTGTATATTAATTCACCGT
ACCCCTAA
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protein sequence of Ggra1434.t1

>Ggra1434.t1 ID=Ggra1434.t1|Name=Ggra1434.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=286bp
MVDANFTDDWIDGAIPPHFPPVESFFDSELFCDENTIANLPDLPLTLPSS
PLLSMPVSLSPPPSPSFRSASHVLTVPLKIAPVSAQPISRPPQNPFSDEK
CPLRKRVKVTLRSSGPGRRVRIATPRKRRRLQTTLYVQNTSECTRLAIRV
PAPSSRNNSSVNSLSFSRRPLKLKPSNMSDPLFRRLQTVASSAPQAAKQP
DALPDITTALQGIAVTVHRFREMNGGAVVRPVPERKVRIQMGRKKKGKKR
TLLRFDDFKVAPLEPEDDTKPRQSGLYLYINSPYP*
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mRNA from alignment at tig00000844_pilon:80600..81457+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1434.t1 ID=Ggra1434.t1|Name=Ggra1434.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000844_pilon:80600..81457+ (Gracilaria gracilis GNS1m male)
ATGGTGGATGCAAACTTTACGGATGACTGGATCGATGGCGCCATCCCGCC
GCATTTCCCGCCGGTAGAGTCCTTCTTCGACTCTGAACTCTTCTGCGATG
AGAACACTATCGCTAATCTTCCTGACTTGCCACTAACTCTTCCATCCAGT
CCGCTCCTTTCCATGCCAGTCTCGCTCTCACCTCCCCCTTCTCCTTCCTT
CCGCTCTGCTTCACACGTGCTTACTGTCCCCCTCAAGATCGCTCCCGTCT
CGGCTCAACCAATCTCAAGACCGCCGCAAAACCCCTTCTCGGACGAAAAG
TGCCCGCTCCGCAAACGGGTAAAGGTCACACTCCGCTCCAGCGGGCCTGG
CCGCCGAGTTCGCATCGCCACCCCCCGCAAACGCCGTCGTCTGCAGACCA
CCTTGTACGTGCAGAACACATCGGAATGCACTCGTCTGGCCATTCGTGTT
CCGGCACCGTCTTCTCGAAACAACAGCTCCGTCAACAGCTTGTCGTTTTC
CAGACGTCCGCTCAAGCTCAAGCCAAGCAACATGTCTGATCCGCTTTTCC
GTCGCTTGCAGACTGTGGCATCGTCCGCGCCACAAGCCGCCAAACAGCCC
GATGCTTTGCCGGATATTACCACCGCTTTGCAGGGGATTGCCGTCACTGT
TCATCGATTCCGCGAGATGAACGGCGGCGCTGTGGTGCGCCCGGTGCCGG
AGAGAAAAGTTCGCATCCAGATGGGCAGAAAGAAGAAGGGAAAGAAAAGG
ACCTTGTTGAGATTCGACGACTTCAAGGTGGCTCCGTTGGAGCCAGAGGA
TGACACCAAGCCGCGTCAGAGCGGTTTGTACCTGTATATTAATTCACCGT
ACCCCTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:80600..81457+

>Ggra1434.t1 ID=Ggra1434.t1|Name=Ggra1434.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00000844_pilon:80600..81457+ (Gracilaria gracilis GNS1m male)
ATGGTGGATGCAAACTTTACGGATGACTGGATCGATGGCGCCATCCCGCC
GCATTTCCCGCCGGTAGAGTCCTTCTTCGACTCTGAACTCTTCTGCGATG
AGAACACTATCGCTAATCTTCCTGACTTGCCACTAACTCTTCCATCCAGT
CCGCTCCTTTCCATGCCAGTCTCGCTCTCACCTCCCCCTTCTCCTTCCTT
CCGCTCTGCTTCACACGTGCTTACTGTCCCCCTCAAGATCGCTCCCGTCT
CGGCTCAACCAATCTCAAGACCGCCGCAAAACCCCTTCTCGGACGAAAAG
TGCCCGCTCCGCAAACGGGTAAAGGTCACACTCCGCTCCAGCGGGCCTGG
CCGCCGAGTTCGCATCGCCACCCCCCGCAAACGCCGTCGTCTGCAGACCA
CCTTGTACGTGCAGAACACATCGGAATGCACTCGTCTGGCCATTCGTGTT
CCGGCACCGTCTTCTCGAAACAACAGCTCCGTCAACAGCTTGTCGTTTTC
CAGACGTCCGCTCAAGCTCAAGCCAAGCAACATGTCTGATCCGCTTTTCC
GTCGCTTGCAGACTGTGGCATCGTCCGCGCCACAAGCCGCCAAACAGCCC
GATGCTTTGCCGGATATTACCACCGCTTTGCAGGGGATTGCCGTCACTGT
TCATCGATTCCGCGAGATGAACGGCGGCGCTGTGGTGCGCCCGGTGCCGG
AGAGAAAAGTTCGCATCCAGATGGGCAGAAAGAAGAAGGGAAAGAAAAGG
ACCTTGTTGAGATTCGACGACTTCAAGGTGGCTCCGTTGGAGCCAGAGGA
TGACACCAAGCCGCGTCAGAGCGGTTTGTACCTGTATATTAATTCACCGT
ACCCCTAA
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