Ggra1431.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1431.t1
Unique Name	Ggra1431.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	395

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:70892..72076 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_04334T0
Preferred name	RPL3
PFAMs	Ribosomal_L3
Max annot lvl	4751\|Fungi
KEGG ko	ko:K02925
KEGG Pathway	ko03010,map03010
KEGG Module	M00177
GOs	GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:1990904
Evalue	4.08e-211
EggNOG OGs	COG0087@1\|root,KOG0746@2759\|Eukaryota,38CDY@33154\|Opisthokonta,3NUF5@4751\|Fungi,1GS71@112252\|Fungi incertae sedis
Description	Ribosomal protein L3
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1431	Ggra1431	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 70892..72076 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1431.t1.start1	Ggra1431.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 70892..70894 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1431.t1.CDS1	Ggra1431.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 70892..72076 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1431.t1.exon1	Ggra1431.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 70892..72076 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1431.t1.stop1	Ggra1431.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 72074..72076 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1431.t1	Ggra1431.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 70892..72076 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:70892..72076+
coding sequence from alignment at tig00000844_pilon:70892..72076+

mRNA sequence

>Ggra1431.t1 ID=Ggra1431.t1|Name=Ggra1431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=395bp
MSHRKFEAPRHGSLAYLPKKRSSRHRGKVKAFPKDDPSKPCHLTAFMGYK
AGMTHIVRDMDKPGSKMHKKEVVEAVTIIETPPIIAVGLVGYVETPYGLR
ALTTVWAEHLSDEVRRRFYKNWYKSKKKAFTKYAKKHAEGSNQIDAELDR
VVKHCSVVRLLVHTQIRKVKIAQKKAHLMEVQINGGSVADKVEFAKGLFE
RPIDVKAVFTKDEMIDAIGVTKGHGFEGVVTRWGVTRLPRKTHRGLRKVA
CIGAWHPARVGFTVARAGQRGYFHRTQTNLKIYRIGDKGDETSATTNFDL
TQKSITPMGGFPHYGMINEDWLMVKGCVVGTKKRIVTLRKSLFPQTSRAA
QEEIVLKFIDTSSKHGHGRFQTIAEKKKYEGTLKRDQIAAQQTA*

spliced messenger RNA

>Ggra1431.t1 ID=Ggra1431.t1|Name=Ggra1431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1185bp|location=Sequence derived from alignment at tig00000844_pilon:70892..72076+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCATCGAAAGTTCGAAGCGCCGCGTCATGGATCTCTTGCGTATCT
GCCGAAGAAGCGATCCAGTCGTCATCGCGGCAAGGTCAAGGCCTTCCCCA
AGGATGATCCGTCTAAACCGTGCCACCTGACCGCCTTTATGGGGTACAAG
GCCGGTATGACTCATATCGTTCGTGATATGGATAAACCGGGATCAAAGAT
GCACAAAAAGGAGGTTGTTGAGGCTGTCACCATCATTGAGACCCCACCGA
TCATTGCGGTTGGCCTTGTCGGATACGTCGAGACTCCTTACGGTCTGCGT
GCTCTCACTACTGTGTGGGCTGAGCATCTTTCCGATGAAGTCAGACGTCG
CTTCTACAAAAACTGGTACAAGTCGAAGAAGAAGGCTTTCACCAAGTATG
CCAAGAAGCATGCTGAGGGCTCCAACCAAATCGATGCCGAGCTCGACAGG
GTTGTCAAGCACTGCTCTGTCGTTCGCTTATTGGTCCATACGCAGATTCG
TAAAGTCAAGATTGCTCAGAAGAAGGCACATCTTATGGAAGTACAGATCA
ACGGTGGTTCCGTGGCTGACAAGGTTGAGTTCGCCAAGGGTCTATTCGAG
CGCCCTATTGACGTGAAGGCCGTCTTCACCAAAGACGAAATGATCGATGC
TATTGGTGTCACAAAGGGTCATGGCTTCGAAGGTGTGGTCACCCGATGGG
GCGTCACACGACTGCCGAGGAAGACTCATCGTGGTCTCCGAAAAGTCGCT
TGTATTGGTGCGTGGCATCCGGCTCGAGTTGGTTTCACAGTAGCTCGTGC
GGGGCAGCGTGGCTACTTCCACAGGACACAGACCAATTTGAAGATTTATC
GAATTGGCGATAAGGGTGATGAGACGAGCGCCACTACCAACTTTGATCTT
ACCCAGAAGTCTATTACCCCGATGGGTGGCTTCCCTCACTATGGTATGAT
CAACGAGGATTGGCTCATGGTCAAGGGGTGCGTAGTTGGCACAAAGAAAC
GTATCGTAACGCTTCGTAAGAGTTTGTTCCCACAGACCTCGCGCGCAGCA
CAGGAGGAAATTGTGCTCAAATTCATCGATACATCATCGAAGCATGGCCA
TGGGCGGTTCCAGACCATTGCAGAAAAGAAGAAGTACGAAGGTACTCTCA
AACGCGACCAAATTGCAGCCCAACAAACCGCTTAG

protein sequence of Ggra1431.t1

>Ggra1431.t1 ID=Ggra1431.t1|Name=Ggra1431.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=395bp
MSHRKFEAPRHGSLAYLPKKRSSRHRGKVKAFPKDDPSKPCHLTAFMGYK
AGMTHIVRDMDKPGSKMHKKEVVEAVTIIETPPIIAVGLVGYVETPYGLR
ALTTVWAEHLSDEVRRRFYKNWYKSKKKAFTKYAKKHAEGSNQIDAELDR
VVKHCSVVRLLVHTQIRKVKIAQKKAHLMEVQINGGSVADKVEFAKGLFE
RPIDVKAVFTKDEMIDAIGVTKGHGFEGVVTRWGVTRLPRKTHRGLRKVA
CIGAWHPARVGFTVARAGQRGYFHRTQTNLKIYRIGDKGDETSATTNFDL
TQKSITPMGGFPHYGMINEDWLMVKGCVVGTKKRIVTLRKSLFPQTSRAA
QEEIVLKFIDTSSKHGHGRFQTIAEKKKYEGTLKRDQIAAQQTA*

mRNA from alignment at tig00000844_pilon:70892..72076+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1431.t1 ID=Ggra1431.t1|Name=Ggra1431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1185bp|location=Sequence derived from alignment at tig00000844_pilon:70892..72076+ (Gracilaria gracilis GNS1m male)
ATGTCTCATCGAAAGTTCGAAGCGCCGCGTCATGGATCTCTTGCGTATCT
GCCGAAGAAGCGATCCAGTCGTCATCGCGGCAAGGTCAAGGCCTTCCCCA
AGGATGATCCGTCTAAACCGTGCCACCTGACCGCCTTTATGGGGTACAAG
GCCGGTATGACTCATATCGTTCGTGATATGGATAAACCGGGATCAAAGAT
GCACAAAAAGGAGGTTGTTGAGGCTGTCACCATCATTGAGACCCCACCGA
TCATTGCGGTTGGCCTTGTCGGATACGTCGAGACTCCTTACGGTCTGCGT
GCTCTCACTACTGTGTGGGCTGAGCATCTTTCCGATGAAGTCAGACGTCG
CTTCTACAAAAACTGGTACAAGTCGAAGAAGAAGGCTTTCACCAAGTATG
CCAAGAAGCATGCTGAGGGCTCCAACCAAATCGATGCCGAGCTCGACAGG
GTTGTCAAGCACTGCTCTGTCGTTCGCTTATTGGTCCATACGCAGATTCG
TAAAGTCAAGATTGCTCAGAAGAAGGCACATCTTATGGAAGTACAGATCA
ACGGTGGTTCCGTGGCTGACAAGGTTGAGTTCGCCAAGGGTCTATTCGAG
CGCCCTATTGACGTGAAGGCCGTCTTCACCAAAGACGAAATGATCGATGC
TATTGGTGTCACAAAGGGTCATGGCTTCGAAGGTGTGGTCACCCGATGGG
GCGTCACACGACTGCCGAGGAAGACTCATCGTGGTCTCCGAAAAGTCGCT
TGTATTGGTGCGTGGCATCCGGCTCGAGTTGGTTTCACAGTAGCTCGTGC
GGGGCAGCGTGGCTACTTCCACAGGACACAGACCAATTTGAAGATTTATC
GAATTGGCGATAAGGGTGATGAGACGAGCGCCACTACCAACTTTGATCTT
ACCCAGAAGTCTATTACCCCGATGGGTGGCTTCCCTCACTATGGTATGAT
CAACGAGGATTGGCTCATGGTCAAGGGGTGCGTAGTTGGCACAAAGAAAC
GTATCGTAACGCTTCGTAAGAGTTTGTTCCCACAGACCTCGCGCGCAGCA
CAGGAGGAAATTGTGCTCAAATTCATCGATACATCATCGAAGCATGGCCA
TGGGCGGTTCCAGACCATTGCAGAAAAGAAGAAGTACGAAGGTACTCTCA
AACGCGACCAAATTGCAGCCCAACAAACCGCTTAG

Coding sequence (CDS) from alignment at tig00000844_pilon:70892..72076+

>Ggra1431.t1 ID=Ggra1431.t1|Name=Ggra1431.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1185bp|location=Sequence derived from alignment at tig00000844_pilon:70892..72076+ (Gracilaria gracilis GNS1m male)
ATGTCTCATCGAAAGTTCGAAGCGCCGCGTCATGGATCTCTTGCGTATCT
GCCGAAGAAGCGATCCAGTCGTCATCGCGGCAAGGTCAAGGCCTTCCCCA
AGGATGATCCGTCTAAACCGTGCCACCTGACCGCCTTTATGGGGTACAAG
GCCGGTATGACTCATATCGTTCGTGATATGGATAAACCGGGATCAAAGAT
GCACAAAAAGGAGGTTGTTGAGGCTGTCACCATCATTGAGACCCCACCGA
TCATTGCGGTTGGCCTTGTCGGATACGTCGAGACTCCTTACGGTCTGCGT
GCTCTCACTACTGTGTGGGCTGAGCATCTTTCCGATGAAGTCAGACGTCG
CTTCTACAAAAACTGGTACAAGTCGAAGAAGAAGGCTTTCACCAAGTATG
CCAAGAAGCATGCTGAGGGCTCCAACCAAATCGATGCCGAGCTCGACAGG
GTTGTCAAGCACTGCTCTGTCGTTCGCTTATTGGTCCATACGCAGATTCG
TAAAGTCAAGATTGCTCAGAAGAAGGCACATCTTATGGAAGTACAGATCA
ACGGTGGTTCCGTGGCTGACAAGGTTGAGTTCGCCAAGGGTCTATTCGAG
CGCCCTATTGACGTGAAGGCCGTCTTCACCAAAGACGAAATGATCGATGC
TATTGGTGTCACAAAGGGTCATGGCTTCGAAGGTGTGGTCACCCGATGGG
GCGTCACACGACTGCCGAGGAAGACTCATCGTGGTCTCCGAAAAGTCGCT
TGTATTGGTGCGTGGCATCCGGCTCGAGTTGGTTTCACAGTAGCTCGTGC
GGGGCAGCGTGGCTACTTCCACAGGACACAGACCAATTTGAAGATTTATC
GAATTGGCGATAAGGGTGATGAGACGAGCGCCACTACCAACTTTGATCTT
ACCCAGAAGTCTATTACCCCGATGGGTGGCTTCCCTCACTATGGTATGAT
CAACGAGGATTGGCTCATGGTCAAGGGGTGCGTAGTTGGCACAAAGAAAC
GTATCGTAACGCTTCGTAAGAGTTTGTTCCCACAGACCTCGCGCGCAGCA
CAGGAGGAAATTGTGCTCAAATTCATCGATACATCATCGAAGCATGGCCA
TGGGCGGTTCCAGACCATTGCAGAAAAGAAGAAGTACGAAGGTACTCTCA
AACGCGACCAAATTGCAGCCCAACAAACCGCTTAG