Ggra1430.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1430.t1
Unique NameGgra1430.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length530
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:68046..69635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1430Ggra1430Gracilaria gracilis GNS1m malegenetig00000844_pilon 68046..69635 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1430.t1.stop1Ggra1430.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 68046..68048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1430.t1.CDS1Ggra1430.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 68046..69635 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1430.t1.exon1Ggra1430.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 68046..69635 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1430.t1.start1Ggra1430.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 69633..69635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1430.t1Ggra1430.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 68046..69635 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1430.t1 ID=Ggra1430.t1|Name=Ggra1430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=530bp
MLPRRRSPMRTRTELQRPPTPTRRRGRSVFSSRSSPSSRNASSAPLRAPP
PPTTRPPAHGTRFFNERTEVEWVLRGACSDRRLVHLALQRAARAVREERM
HMRQRTPPLCVPPRAVGSEVDALLQPRRKAPRAPSAPLDTRPRDASLLDS
RRNVFGVRTARYRRALRREHDSDGVAYARRANSACVEPGKFEWYDTRTDY
EWRLPRASAQRRIDFLSDFGERHYERERSLWSASSNSEHDTRWWRNADRE
DRRSPSSFREDASGARLRDRTGKRIGGSGTRWRDVLAKKDLADNNAEPSY
CESLDKSHDLSPRSSLDIEEATSFYSWDEPHSTSIREWRSNTSLSYRPQP
DTRPRHIKNIGRQMCLYDLSSIVDASNEPCVSYDRQIFDPVSKLWTYVEA
SQPSSSPWELRAVGSPVTWSASGTEEGASSGSRQAAPVSADSNCTNALPS
PPVPDRKPAEKSTPRRNSSPGFAAITSAMEAKRAFMATRDLWLGTTRKSV
YGPANLEALIFASEIDDVEQGILRRASVT*
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spliced messenger RNA

>Ggra1430.t1 ID=Ggra1430.t1|Name=Ggra1430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00000844_pilon:68046..69635- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCGCGCCGTCGCTCGCCCATGCGCACGCGCACCGAGCTGCAACG
CCCGCCCACGCCCACGCGCCGCCGCGGTCGCTCCGTGTTCTCGTCGCGCT
CGTCGCCCTCTTCGCGCAATGCGTCGTCCGCGCCGCTGCGCGCGCCGCCG
CCGCCCACCACCCGCCCGCCGGCGCACGGCACGCGCTTCTTCAACGAGCG
CACCGAGGTGGAGTGGGTGCTCAGGGGCGCCTGCAGCGACAGACGCCTCG
TGCATCTGGCGTTGCAGAGGGCGGCGCGCGCCGTTCGGGAGGAGCGCATG
CACATGAGGCAGCGTACGCCGCCGCTTTGCGTGCCGCCGCGCGCCGTCGG
TAGTGAGGTCGATGCCTTGTTGCAGCCCAGGCGCAAGGCGCCTCGCGCCC
CGTCCGCTCCTTTGGATACGCGCCCTCGCGACGCCTCTCTTCTGGATTCG
CGCCGCAATGTGTTCGGCGTCCGCACTGCAAGGTATCGCCGCGCCTTGCG
CCGCGAGCATGACAGTGACGGCGTGGCGTACGCCAGAAGAGCCAACTCGG
CGTGCGTGGAGCCCGGTAAGTTTGAGTGGTATGACACTCGTACCGACTAC
GAGTGGCGCTTGCCACGTGCAAGCGCGCAGCGTAGGATTGACTTTCTGTC
TGATTTTGGCGAGCGTCACTACGAGCGTGAGCGCTCGCTGTGGTCTGCTA
GCTCCAATTCGGAGCACGATACCCGCTGGTGGCGAAATGCCGACCGTGAG
GATCGCCGTTCTCCGTCTTCATTTCGCGAGGATGCTTCTGGCGCCCGACT
CCGAGATCGTACGGGCAAGCGCATTGGCGGAAGCGGAACACGTTGGCGCG
ATGTGCTGGCCAAGAAGGACCTTGCCGACAACAACGCAGAGCCTTCTTAC
TGCGAGTCGCTTGACAAGAGCCATGACCTCAGTCCTAGATCTTCTTTGGA
TATTGAGGAAGCTACTAGCTTCTACAGCTGGGATGAGCCACATAGCACAT
CAATACGAGAGTGGCGATCGAACACTTCGCTATCGTACCGACCACAGCCG
GACACTAGACCTCGACACATCAAGAACATTGGTCGTCAGATGTGTTTGTA
TGATCTCTCCAGCATAGTTGACGCTTCAAATGAGCCATGCGTTTCTTACG
ACCGTCAGATATTTGACCCCGTGAGCAAGTTGTGGACCTATGTGGAAGCT
TCTCAACCGTCTTCCTCCCCTTGGGAGTTACGAGCCGTGGGCTCCCCTGT
TACTTGGTCTGCATCGGGTACAGAGGAAGGTGCTAGCTCAGGTTCTCGCC
AAGCTGCACCTGTTTCTGCAGACTCCAATTGTACAAACGCGTTACCATCA
CCTCCAGTACCCGACCGAAAACCTGCAGAAAAGTCCACCCCACGTCGGAA
TAGCTCACCTGGCTTTGCCGCAATCACAAGCGCTATGGAGGCGAAGCGTG
CCTTCATGGCCACTCGAGACTTGTGGCTGGGTACTACCCGCAAGTCAGTC
TATGGTCCAGCCAACCTTGAGGCTCTCATTTTTGCTTCAGAGATTGACGA
TGTTGAACAGGGGATCCTGCGGAGGGCGTCTGTAACGTGA
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protein sequence of Ggra1430.t1

>Ggra1430.t1 ID=Ggra1430.t1|Name=Ggra1430.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=530bp
MLPRRRSPMRTRTELQRPPTPTRRRGRSVFSSRSSPSSRNASSAPLRAPP
PPTTRPPAHGTRFFNERTEVEWVLRGACSDRRLVHLALQRAARAVREERM
HMRQRTPPLCVPPRAVGSEVDALLQPRRKAPRAPSAPLDTRPRDASLLDS
RRNVFGVRTARYRRALRREHDSDGVAYARRANSACVEPGKFEWYDTRTDY
EWRLPRASAQRRIDFLSDFGERHYERERSLWSASSNSEHDTRWWRNADRE
DRRSPSSFREDASGARLRDRTGKRIGGSGTRWRDVLAKKDLADNNAEPSY
CESLDKSHDLSPRSSLDIEEATSFYSWDEPHSTSIREWRSNTSLSYRPQP
DTRPRHIKNIGRQMCLYDLSSIVDASNEPCVSYDRQIFDPVSKLWTYVEA
SQPSSSPWELRAVGSPVTWSASGTEEGASSGSRQAAPVSADSNCTNALPS
PPVPDRKPAEKSTPRRNSSPGFAAITSAMEAKRAFMATRDLWLGTTRKSV
YGPANLEALIFASEIDDVEQGILRRASVT*
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mRNA from alignment at tig00000844_pilon:68046..69635-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1430.t1 ID=Ggra1430.t1|Name=Ggra1430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00000844_pilon:68046..69635- (Gracilaria gracilis GNS1m male)
ATGCTTCCGCGCCGTCGCTCGCCCATGCGCACGCGCACCGAGCTGCAACG
CCCGCCCACGCCCACGCGCCGCCGCGGTCGCTCCGTGTTCTCGTCGCGCT
CGTCGCCCTCTTCGCGCAATGCGTCGTCCGCGCCGCTGCGCGCGCCGCCG
CCGCCCACCACCCGCCCGCCGGCGCACGGCACGCGCTTCTTCAACGAGCG
CACCGAGGTGGAGTGGGTGCTCAGGGGCGCCTGCAGCGACAGACGCCTCG
TGCATCTGGCGTTGCAGAGGGCGGCGCGCGCCGTTCGGGAGGAGCGCATG
CACATGAGGCAGCGTACGCCGCCGCTTTGCGTGCCGCCGCGCGCCGTCGG
TAGTGAGGTCGATGCCTTGTTGCAGCCCAGGCGCAAGGCGCCTCGCGCCC
CGTCCGCTCCTTTGGATACGCGCCCTCGCGACGCCTCTCTTCTGGATTCG
CGCCGCAATGTGTTCGGCGTCCGCACTGCAAGGTATCGCCGCGCCTTGCG
CCGCGAGCATGACAGTGACGGCGTGGCGTACGCCAGAAGAGCCAACTCGG
CGTGCGTGGAGCCCGGTAAGTTTGAGTGGTATGACACTCGTACCGACTAC
GAGTGGCGCTTGCCACGTGCAAGCGCGCAGCGTAGGATTGACTTTCTGTC
TGATTTTGGCGAGCGTCACTACGAGCGTGAGCGCTCGCTGTGGTCTGCTA
GCTCCAATTCGGAGCACGATACCCGCTGGTGGCGAAATGCCGACCGTGAG
GATCGCCGTTCTCCGTCTTCATTTCGCGAGGATGCTTCTGGCGCCCGACT
CCGAGATCGTACGGGCAAGCGCATTGGCGGAAGCGGAACACGTTGGCGCG
ATGTGCTGGCCAAGAAGGACCTTGCCGACAACAACGCAGAGCCTTCTTAC
TGCGAGTCGCTTGACAAGAGCCATGACCTCAGTCCTAGATCTTCTTTGGA
TATTGAGGAAGCTACTAGCTTCTACAGCTGGGATGAGCCACATAGCACAT
CAATACGAGAGTGGCGATCGAACACTTCGCTATCGTACCGACCACAGCCG
GACACTAGACCTCGACACATCAAGAACATTGGTCGTCAGATGTGTTTGTA
TGATCTCTCCAGCATAGTTGACGCTTCAAATGAGCCATGCGTTTCTTACG
ACCGTCAGATATTTGACCCCGTGAGCAAGTTGTGGACCTATGTGGAAGCT
TCTCAACCGTCTTCCTCCCCTTGGGAGTTACGAGCCGTGGGCTCCCCTGT
TACTTGGTCTGCATCGGGTACAGAGGAAGGTGCTAGCTCAGGTTCTCGCC
AAGCTGCACCTGTTTCTGCAGACTCCAATTGTACAAACGCGTTACCATCA
CCTCCAGTACCCGACCGAAAACCTGCAGAAAAGTCCACCCCACGTCGGAA
TAGCTCACCTGGCTTTGCCGCAATCACAAGCGCTATGGAGGCGAAGCGTG
CCTTCATGGCCACTCGAGACTTGTGGCTGGGTACTACCCGCAAGTCAGTC
TATGGTCCAGCCAACCTTGAGGCTCTCATTTTTGCTTCAGAGATTGACGA
TGTTGAACAGGGGATCCTGCGGAGGGCGTCTGTAACGTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:68046..69635-

>Ggra1430.t1 ID=Ggra1430.t1|Name=Ggra1430.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1590bp|location=Sequence derived from alignment at tig00000844_pilon:68046..69635- (Gracilaria gracilis GNS1m male)
ATGCTTCCGCGCCGTCGCTCGCCCATGCGCACGCGCACCGAGCTGCAACG
CCCGCCCACGCCCACGCGCCGCCGCGGTCGCTCCGTGTTCTCGTCGCGCT
CGTCGCCCTCTTCGCGCAATGCGTCGTCCGCGCCGCTGCGCGCGCCGCCG
CCGCCCACCACCCGCCCGCCGGCGCACGGCACGCGCTTCTTCAACGAGCG
CACCGAGGTGGAGTGGGTGCTCAGGGGCGCCTGCAGCGACAGACGCCTCG
TGCATCTGGCGTTGCAGAGGGCGGCGCGCGCCGTTCGGGAGGAGCGCATG
CACATGAGGCAGCGTACGCCGCCGCTTTGCGTGCCGCCGCGCGCCGTCGG
TAGTGAGGTCGATGCCTTGTTGCAGCCCAGGCGCAAGGCGCCTCGCGCCC
CGTCCGCTCCTTTGGATACGCGCCCTCGCGACGCCTCTCTTCTGGATTCG
CGCCGCAATGTGTTCGGCGTCCGCACTGCAAGGTATCGCCGCGCCTTGCG
CCGCGAGCATGACAGTGACGGCGTGGCGTACGCCAGAAGAGCCAACTCGG
CGTGCGTGGAGCCCGGTAAGTTTGAGTGGTATGACACTCGTACCGACTAC
GAGTGGCGCTTGCCACGTGCAAGCGCGCAGCGTAGGATTGACTTTCTGTC
TGATTTTGGCGAGCGTCACTACGAGCGTGAGCGCTCGCTGTGGTCTGCTA
GCTCCAATTCGGAGCACGATACCCGCTGGTGGCGAAATGCCGACCGTGAG
GATCGCCGTTCTCCGTCTTCATTTCGCGAGGATGCTTCTGGCGCCCGACT
CCGAGATCGTACGGGCAAGCGCATTGGCGGAAGCGGAACACGTTGGCGCG
ATGTGCTGGCCAAGAAGGACCTTGCCGACAACAACGCAGAGCCTTCTTAC
TGCGAGTCGCTTGACAAGAGCCATGACCTCAGTCCTAGATCTTCTTTGGA
TATTGAGGAAGCTACTAGCTTCTACAGCTGGGATGAGCCACATAGCACAT
CAATACGAGAGTGGCGATCGAACACTTCGCTATCGTACCGACCACAGCCG
GACACTAGACCTCGACACATCAAGAACATTGGTCGTCAGATGTGTTTGTA
TGATCTCTCCAGCATAGTTGACGCTTCAAATGAGCCATGCGTTTCTTACG
ACCGTCAGATATTTGACCCCGTGAGCAAGTTGTGGACCTATGTGGAAGCT
TCTCAACCGTCTTCCTCCCCTTGGGAGTTACGAGCCGTGGGCTCCCCTGT
TACTTGGTCTGCATCGGGTACAGAGGAAGGTGCTAGCTCAGGTTCTCGCC
AAGCTGCACCTGTTTCTGCAGACTCCAATTGTACAAACGCGTTACCATCA
CCTCCAGTACCCGACCGAAAACCTGCAGAAAAGTCCACCCCACGTCGGAA
TAGCTCACCTGGCTTTGCCGCAATCACAAGCGCTATGGAGGCGAAGCGTG
CCTTCATGGCCACTCGAGACTTGTGGCTGGGTACTACCCGCAAGTCAGTC
TATGGTCCAGCCAACCTTGAGGCTCTCATTTTTGCTTCAGAGATTGACGA
TGTTGAACAGGGGATCCTGCGGAGGGCGTCTGTAACGTGA
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