Ggra1429.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1429.t1
Unique NameGgra1429.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length523
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:64811..67369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ37908
PFAMsPCI,eIF-3c_N
Max annot lvl35493|Streptophyta
KEGG koko:K03252,ko:K08597
KEGG Pathwayko03013,map03013
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0031369,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue6.77e-20
EggNOG OGsCOG2828@1|root,KOG1076@1|root,KOG1076@2759|Eukaryota,KOG3246@2759|Eukaryota,37NK2@33090|Viridiplantae,3GFD2@35493|Streptophyta
EC3.4.22.68
Descriptioncomponent of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
COG categoryJ
BRITEko00000,ko00001,ko01000,ko01002,ko03012,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1429Ggra1429Gracilaria gracilis GNS1m malegenetig00000844_pilon 64811..67369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1429.t1Ggra1429.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 64811..67369 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1429.t1.start1Ggra1429.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 64811..64813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1429.t1.CDS1Ggra1429.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 64811..65480 +
Ggra1429.t1.CDS2Ggra1429.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 65624..65806 +
Ggra1429.t1.CDS3Ggra1429.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000844_pilon 66348..66560 +
Ggra1429.t1.CDS4Ggra1429.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000844_pilon 66640..66942 +
Ggra1429.t1.CDS5Ggra1429.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000844_pilon 67170..67369 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1429.t1.exon1Ggra1429.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 64811..65480 +
Ggra1429.t1.exon2Ggra1429.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 65624..65806 +
Ggra1429.t1.exon3Ggra1429.t1.exon3Gracilaria gracilis GNS1m maleexontig00000844_pilon 66348..66560 +
Ggra1429.t1.exon4Ggra1429.t1.exon4Gracilaria gracilis GNS1m maleexontig00000844_pilon 66640..66942 +
Ggra1429.t1.exon5Ggra1429.t1.exon5Gracilaria gracilis GNS1m maleexontig00000844_pilon 67170..67369 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1429.t1.intron1Ggra1429.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 65481..65623 +
Ggra1429.t1.intron2Ggra1429.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000844_pilon 65807..66347 +
Ggra1429.t1.intron3Ggra1429.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000844_pilon 66561..66639 +
Ggra1429.t1.intron4Ggra1429.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000844_pilon 66943..67169 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1429.t1.stop1Ggra1429.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 67367..67369 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1429.t1 ID=Ggra1429.t1|Name=Ggra1429.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=523bp
MTSYFSMKWSSILPRSTFVQEASGSSLSGSDDIALDTFKQSSKPMLEDAV
PRLSDEDPFRCLLVEQSTLRDDILLRVLRFNEMNVSKATHQLETTLNWRA
HSRICSVGLDMVRGSSSGIPLARLCEPNEKGDALFFASAGLYDRSSIERA
VQKVGVARMFEHMLYDSNGPKVRRGTVVVDFTGFGTKNVDVNGLRVGMAT
YMNHYPEIFDKIFLANYPRLLYGVWRTIVPLLDKRTARRVVFVETKEHLK
GALVQRFSEKQIPGWLGGKAEVSTVRLLNGIEIGRSRPMTPTPRVASLGD
ASLSVDDLALLVPPCWMNDQLISFWCEHLRIHVLENDSRVAILPPNLSFF
MSLTDDHEVLSQIASANNLKDSELIILTVNDSRDSDVDGNVASGTHWSLL
ALDRQANVAYYLDSLPHLTNVKVSQVLLHRLARMLGTSKASFVELDTPRQ
RNSYDCGAYACKFAEDVVQCFLSKKQISSVYEKGTELHQDQIDQKRQEIG
KLACRLLPDEAVEVGPQQSSPQ*
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spliced messenger RNA

>Ggra1429.t1 ID=Ggra1429.t1|Name=Ggra1429.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000844_pilon:64811..67369+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAGCTACTTCTCAATGAAATGGTCCTCTATACTCCCGCGCTCGAC
CTTTGTACAAGAAGCAAGCGGTTCAAGTCTCTCTGGAAGTGACGACATCG
CTCTTGACACATTCAAGCAGTCTAGTAAGCCTATGCTCGAGGATGCGGTC
CCAAGACTGTCGGATGAAGACCCTTTTCGTTGCTTACTTGTCGAGCAGAG
CACTCTCCGAGACGATATCTTGCTACGAGTTTTACGCTTCAACGAGATGA
ATGTGAGCAAAGCTACGCATCAATTGGAAACAACTCTTAACTGGCGTGCT
CATAGTCGAATATGTTCCGTTGGTCTTGACATGGTGCGAGGGAGTTCGAG
TGGTATTCCTCTTGCGCGACTTTGCGAGCCCAACGAAAAAGGGGACGCTT
TGTTCTTCGCTTCGGCGGGGTTATATGACAGATCCTCGATTGAACGAGCT
GTGCAGAAAGTAGGGGTGGCACGAATGTTCGAACATATGCTATATGACTC
CAACGGTCCAAAAGTAAGACGAGGGACAGTTGTTGTAGACTTTACTGGAT
TTGGAACAAAAAACGTTGATGTGAATGGGTTGCGAGTCGGAATGGCAACG
TATATGAACCACTATCCAGAGATCTTCGACAAGATATTTTTGGCTAACTA
TCCGCGGTTATTATATGGGGTTTGGAGAACGATTGTACCATTGCTAGACA
AACGAACAGCGCGTCGAGTCGTCTTCGTGGAAACAAAGGAACACCTTAAA
GGAGCTTTGGTGCAACGTTTTTCTGAAAAACAGATTCCTGGTTGGCTGGG
AGGGAAGGCTGAAGTTTCTACGGTGCGCCTTTTGAATGGAATCGAAATCG
GAAGATCAAGGCCAATGACTCCGACACCTCGAGTTGCTTCTCTGGGTGAT
GCCTCCTTGTCTGTGGATGACTTGGCATTGCTTGTTCCTCCGTGTTGGAT
GAATGACCAACTCATCTCGTTTTGGTGTGAACACCTGCGAATTCATGTAC
TGGAAAATGATTCTCGAGTTGCAATTCTACCTCCAAATCTGTCCTTCTTC
ATGTCTTTGACAGACGATCATGAAGTACTCTCGCAAATAGCTTCTGCAAA
CAATTTGAAAGACAGCGAGCTCATCATCCTCACCGTCAACGACAGTCGGG
ACTCTGACGTTGATGGAAATGTTGCGAGCGGAACTCATTGGAGTCTGCTC
GCCTTGGATCGTCAAGCAAACGTCGCCTACTATTTGGACTCCCTACCGCA
CCTCACCAACGTAAAGGTGTCTCAAGTTCTTTTGCATCGCCTGGCGAGAA
TGCTCGGTACTTCAAAGGCGTCGTTTGTTGAGCTCGACACACCGCGGCAA
AGGAACAGCTATGATTGCGGTGCATATGCATGCAAGTTTGCGGAGGATGT
CGTTCAATGCTTTCTATCAAAGAAACAAATATCATCGGTTTATGAGAAGG
GAACAGAGCTGCACCAGGATCAAATTGACCAAAAGCGTCAAGAAATCGGA
AAACTTGCGTGCAGGCTTCTACCTGACGAAGCAGTTGAGGTTGGTCCACA
GCAAAGCAGTCCACAGTAG
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protein sequence of Ggra1429.t1

>Ggra1429.t1 ID=Ggra1429.t1|Name=Ggra1429.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=523bp
MTSYFSMKWSSILPRSTFVQEASGSSLSGSDDIALDTFKQSSKPMLEDAV
PRLSDEDPFRCLLVEQSTLRDDILLRVLRFNEMNVSKATHQLETTLNWRA
HSRICSVGLDMVRGSSSGIPLARLCEPNEKGDALFFASAGLYDRSSIERA
VQKVGVARMFEHMLYDSNGPKVRRGTVVVDFTGFGTKNVDVNGLRVGMAT
YMNHYPEIFDKIFLANYPRLLYGVWRTIVPLLDKRTARRVVFVETKEHLK
GALVQRFSEKQIPGWLGGKAEVSTVRLLNGIEIGRSRPMTPTPRVASLGD
ASLSVDDLALLVPPCWMNDQLISFWCEHLRIHVLENDSRVAILPPNLSFF
MSLTDDHEVLSQIASANNLKDSELIILTVNDSRDSDVDGNVASGTHWSLL
ALDRQANVAYYLDSLPHLTNVKVSQVLLHRLARMLGTSKASFVELDTPRQ
RNSYDCGAYACKFAEDVVQCFLSKKQISSVYEKGTELHQDQIDQKRQEIG
KLACRLLPDEAVEVGPQQSSPQ*
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mRNA from alignment at tig00000844_pilon:64811..67369+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1429.t1 ID=Ggra1429.t1|Name=Ggra1429.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2559bp|location=Sequence derived from alignment at tig00000844_pilon:64811..67369+ (Gracilaria gracilis GNS1m male)
ATGACGAGCTACTTCTCAATGAAATGGTCCTCTATACTCCCGCGCTCGAC
CTTTGTACAAGAAGCAAGCGGTTCAAGTCTCTCTGGAAGTGACGACATCG
CTCTTGACACATTCAAGCAGTCTAGTAAGCCTATGCTCGAGGATGCGGTC
CCAAGACTGTCGGATGAAGACCCTTTTCGTTGCTTACTTGTCGAGCAGAG
CACTCTCCGAGACGATATCTTGCTACGAGTTTTACGCTTCAACGAGATGA
ATGTGAGCAAAGCTACGCATCAATTGGAAACAACTCTTAACTGGCGTGCT
CATAGTCGAATATGTTCCGTTGGTCTTGACATGGTGCGAGGGAGTTCGAG
TGGTATTCCTCTTGCGCGACTTTGCGAGCCCAACGAAAAAGGGGACGCTT
TGTTCTTCGCTTCGGCGGGGTTATATGACAGATCCTCGATTGAACGAGCT
GTGCAGAAAGTAGGGGTGGCACGAATGTTCGAACATATGCTATATGACTC
CAACGGTCCAAAAGTAAGACGAGGGACAGTTGTTGTAGACTTTACTGGAT
TTGGAACAAAAAACGTTGATGTGAATGGGTTGCGAGTCGGAATGGCAACG
TATATGAACCACTATCCAGAGATCTTCGACAAGATATTTTTGGCTAACTA
TCCGCGGTTATTATATGGGGGTAAGCTATTGAAACACGAAAGCAAAGTCA
GGCCAGCTACAACAATGTCACAAGCACTAACTCAAATTCACTGCACTTCA
TTTTGTCACTGCACACATGATCCCGCTCCTGTTCTCTTGGGTGTCGTATG
ATATCTACTACAGTTTGGAGAACGATTGTACCATTGCTAGACAAACGAAC
AGCGCGTCGAGTCGTCTTCGTGGAAACAAAGGAACACCTTAAAGGAGCTT
TGGTGCAACGTTTTTCTGAAAAACAGATTCCTGGTTGGCTGGGAGGGAAG
GCTGAAGTTTCTACGGTGCGCCTTTTGAATGGAATCGAAATCGGAAGTAA
GGCGCTGACTGAAAGCTTTGTTTAAGACAGGGACAGCGAGCAGAGAGAGG
TTCCTTTGTAAACCTCTACTAGATATCTATCTTTTGGAGAGCTTGGACAA
GGGAGACTTGATCCTTGCCGTAACTTCTCTTTTTTATTTCGATCATCGCT
GGGTACAGTGCTGACGAACGCATGGGCCCATTCGGCCAATCATCAGCGGT
TTTTCATAACCCTCAACTGTACAAGTTTAAACCGATCTTTGCGCCAAACG
CTGGTCCCTCACTGCCGGTGGAAACGACCTGGAGTTCATTCCATGTGCCG
CGACCTACCTTCGTGATTTCGGTGCAGCTTCACAAGGTTGGAGATTATGG
ATTAAGTTCGGGCGGACTTTGTATCTATTGTGCACCTTTGCACCTACCGT
CTTTTGAGGAGACAAGGTACCGTTGGTACCGTTGTACAAGAGTAATAATA
TCTTTTTTTCCTTTCCCATTGTTCTCGAGGAGCAGACCAGACACAAGTTG
TCGTAAGTATAAAAAGGTACCTATTCTGACCTTAAAGGATCAAGGCCAAT
GACTCCGACACCTCGAGTTGCTTCTCTGGGTGATGCCTCCTTGTCTGTGG
ATGACTTGGCATTGCTTGTTCCTCCGTGTTGGATGAATGACCAACTCATC
TCGTTTTGGTGTGAACACCTGCGAATTCATGTACTGGAAAATGATTCTCG
AGTTGCAATTCTACCTCCAAATCTGTCCTTCTTCATGTCTTTGACAGACG
GTAAGATGCCTTTCATGTATACTATTCAGTCAGCAAGGGCTCGTTTCTAA
ACTTGTAGCATTTGATTCTGCGTTACCAGATCATGAAGTACTCTCGCAAA
TAGCTTCTGCAAACAATTTGAAAGACAGCGAGCTCATCATCCTCACCGTC
AACGACAGTCGGGACTCTGACGTTGATGGAAATGTTGCGAGCGGAACTCA
TTGGAGTCTGCTCGCCTTGGATCGTCAAGCAAACGTCGCCTACTATTTGG
ACTCCCTACCGCACCTCACCAACGTAAAGGTGTCTCAAGTTCTTTTGCAT
CGCCTGGCGAGAATGCTCGGTACTTCAAAGGCGTCGTTTGTTGAGCTCGA
CACACCGCGGCAAAGGAACAGCTATGATTGCGGTACGTCTCTCTTCTCTT
TGTATCTTAAAAGTATACAGGCTTAGCTAGGAAGACGAAGCATCTTCTCA
GGTCAGAAGTACGAGAAGATGAAAGGCGACCCTTTAGCACACTTTCGAGT
TCGAACAACGCAACAATTGTGCTGAAAAGAAGCCTTTACTCACCAACTGC
GATGTGGATTGGCCTAACCCTACATCTTTGTCGGCGATGTGCGTTTATAT
CCATGTCAGGTGCATATGCATGCAAGTTTGCGGAGGATGTCGTTCAATGC
TTTCTATCAAAGAAACAAATATCATCGGTTTATGAGAAGGGAACAGAGCT
GCACCAGGATCAAATTGACCAAAAGCGTCAAGAAATCGGAAAACTTGCGT
GCAGGCTTCTACCTGACGAAGCAGTTGAGGTTGGTCCACAGCAAAGCAGT
CCACAGTAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:64811..67369+

>Ggra1429.t1 ID=Ggra1429.t1|Name=Ggra1429.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1569bp|location=Sequence derived from alignment at tig00000844_pilon:64811..67369+ (Gracilaria gracilis GNS1m male)
ATGACGAGCTACTTCTCAATGAAATGGTCCTCTATACTCCCGCGCTCGAC
CTTTGTACAAGAAGCAAGCGGTTCAAGTCTCTCTGGAAGTGACGACATCG
CTCTTGACACATTCAAGCAGTCTAGTAAGCCTATGCTCGAGGATGCGGTC
CCAAGACTGTCGGATGAAGACCCTTTTCGTTGCTTACTTGTCGAGCAGAG
CACTCTCCGAGACGATATCTTGCTACGAGTTTTACGCTTCAACGAGATGA
ATGTGAGCAAAGCTACGCATCAATTGGAAACAACTCTTAACTGGCGTGCT
CATAGTCGAATATGTTCCGTTGGTCTTGACATGGTGCGAGGGAGTTCGAG
TGGTATTCCTCTTGCGCGACTTTGCGAGCCCAACGAAAAAGGGGACGCTT
TGTTCTTCGCTTCGGCGGGGTTATATGACAGATCCTCGATTGAACGAGCT
GTGCAGAAAGTAGGGGTGGCACGAATGTTCGAACATATGCTATATGACTC
CAACGGTCCAAAAGTAAGACGAGGGACAGTTGTTGTAGACTTTACTGGAT
TTGGAACAAAAAACGTTGATGTGAATGGGTTGCGAGTCGGAATGGCAACG
TATATGAACCACTATCCAGAGATCTTCGACAAGATATTTTTGGCTAACTA
TCCGCGGTTATTATATGGGGTTTGGAGAACGATTGTACCATTGCTAGACA
AACGAACAGCGCGTCGAGTCGTCTTCGTGGAAACAAAGGAACACCTTAAA
GGAGCTTTGGTGCAACGTTTTTCTGAAAAACAGATTCCTGGTTGGCTGGG
AGGGAAGGCTGAAGTTTCTACGGTGCGCCTTTTGAATGGAATCGAAATCG
GAAGATCAAGGCCAATGACTCCGACACCTCGAGTTGCTTCTCTGGGTGAT
GCCTCCTTGTCTGTGGATGACTTGGCATTGCTTGTTCCTCCGTGTTGGAT
GAATGACCAACTCATCTCGTTTTGGTGTGAACACCTGCGAATTCATGTAC
TGGAAAATGATTCTCGAGTTGCAATTCTACCTCCAAATCTGTCCTTCTTC
ATGTCTTTGACAGACGATCATGAAGTACTCTCGCAAATAGCTTCTGCAAA
CAATTTGAAAGACAGCGAGCTCATCATCCTCACCGTCAACGACAGTCGGG
ACTCTGACGTTGATGGAAATGTTGCGAGCGGAACTCATTGGAGTCTGCTC
GCCTTGGATCGTCAAGCAAACGTCGCCTACTATTTGGACTCCCTACCGCA
CCTCACCAACGTAAAGGTGTCTCAAGTTCTTTTGCATCGCCTGGCGAGAA
TGCTCGGTACTTCAAAGGCGTCGTTTGTTGAGCTCGACACACCGCGGCAA
AGGAACAGCTATGATTGCGGTGCATATGCATGCAAGTTTGCGGAGGATGT
CGTTCAATGCTTTCTATCAAAGAAACAAATATCATCGGTTTATGAGAAGG
GAACAGAGCTGCACCAGGATCAAATTGACCAAAAGCGTCAAGAAATCGGA
AAACTTGCGTGCAGGCTTCTACCTGACGAAGCAGTTGAGGTTGGTCCACA
GCAAAGCAGTCCACAGTAG
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