Ggra1428.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1428.t1
Unique NameGgra1428.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:60989..61985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_03363T0
Max annot lvl529818.AMSG_03363T0|-
Evalue1.31e-12
EggNOG OGsKOG1470@1|root,KOG1470@2759|Eukaryota
Descriptionintermembrane phospholipid transfer
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1428Ggra1428Gracilaria gracilis GNS1m malegenetig00000844_pilon 60989..61985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1428.t1Ggra1428.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 60989..61985 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1428.t1.start1Ggra1428.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 60989..60991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1428.t1.CDS1Ggra1428.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 60989..61634 +
Ggra1428.t1.CDS2Ggra1428.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 61771..61985 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1428.t1.exon1Ggra1428.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 60989..61634 +
Ggra1428.t1.exon2Ggra1428.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 61771..61985 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1428.t1.intron1Ggra1428.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 61635..61770 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1428.t1.stop1Ggra1428.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 61983..61985 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1428.t1 ID=Ggra1428.t1|Name=Ggra1428.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=287bp
MTSYFTSYRSAKPIEDAPLSALPEDESAALATLQARTEHIFSPPHSKLHP
QDPWTTLSHRQIHALLIRFLRYNLLQIDASYAHICKAAAWRAEECPWNLG
VQALQGQPAGVPILSDVIRGLDDDVLLFVPCRHYEKSLVDRKAQATAMKA
FFEHYAYAVDGARALSAVMLIDFSGLHLRQVDLSAMKTAINIFLSYYPEV
LRKVILVNYPRWIHGTWKCIAPLLDARTIARVVWVQNGDGLRSELRKYFD
LDSLPRWLDGDGKNGTMRLFSGFQLNPEECRAKLWA*
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spliced messenger RNA

>Ggra1428.t1 ID=Ggra1428.t1|Name=Ggra1428.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000844_pilon:60989..61985+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCCTACTTTACGAGCTACCGTAGCGCCAAACCGATTGAAGATGC
CCCTCTATCAGCGCTTCCAGAAGACGAATCTGCCGCTCTTGCTACACTCC
AAGCACGCACCGAGCATATATTCTCACCACCACATAGCAAACTCCACCCA
CAAGATCCATGGACAACTCTCTCTCATCGACAGATACATGCGCTCTTGAT
TCGATTCCTTCGATATAATCTGCTCCAAATCGACGCATCGTACGCGCACA
TATGCAAAGCCGCTGCCTGGCGTGCCGAGGAGTGTCCGTGGAATCTTGGT
GTACAAGCGCTGCAAGGTCAACCAGCAGGCGTTCCCATACTGTCTGATGT
TATTCGTGGACTTGATGATGACGTACTTTTGTTCGTTCCATGTCGACATT
ACGAAAAGTCTCTAGTTGACCGTAAAGCTCAAGCCACTGCGATGAAGGCT
TTCTTTGAGCATTATGCGTACGCCGTTGATGGCGCAAGAGCTTTGAGTGC
AGTTATGCTCATTGATTTTTCTGGTCTGCATTTGAGGCAAGTGGACCTCA
GCGCGATGAAGACAGCCATCAACATATTCCTGTCTTACTACCCGGAAGTG
TTAAGAAAGGTCATTCTCGTTAATTACCCGCGTTGGATTCATGGCACCTG
GAAATGTATTGCGCCTCTACTTGATGCAAGGACGATTGCAAGAGTAGTGT
GGGTTCAAAATGGAGACGGTCTGCGATCTGAATTGCGGAAATACTTTGAT
CTAGATAGTCTTCCGCGTTGGTTGGATGGGGACGGAAAGAACGGAACGAT
GCGATTATTCTCAGGATTTCAATTGAACCCGGAGGAATGCAGAGCGAAAC
TTTGGGCCTGA
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protein sequence of Ggra1428.t1

>Ggra1428.t1 ID=Ggra1428.t1|Name=Ggra1428.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=287bp
MTSYFTSYRSAKPIEDAPLSALPEDESAALATLQARTEHIFSPPHSKLHP
QDPWTTLSHRQIHALLIRFLRYNLLQIDASYAHICKAAAWRAEECPWNLG
VQALQGQPAGVPILSDVIRGLDDDVLLFVPCRHYEKSLVDRKAQATAMKA
FFEHYAYAVDGARALSAVMLIDFSGLHLRQVDLSAMKTAINIFLSYYPEV
LRKVILVNYPRWIHGTWKCIAPLLDARTIARVVWVQNGDGLRSELRKYFD
LDSLPRWLDGDGKNGTMRLFSGFQLNPEECRAKLWA*
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mRNA from alignment at tig00000844_pilon:60989..61985+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1428.t1 ID=Ggra1428.t1|Name=Ggra1428.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=997bp|location=Sequence derived from alignment at tig00000844_pilon:60989..61985+ (Gracilaria gracilis GNS1m male)
ATGACCTCCTACTTTACGAGCTACCGTAGCGCCAAACCGATTGAAGATGC
CCCTCTATCAGCGCTTCCAGAAGACGAATCTGCCGCTCTTGCTACACTCC
AAGCACGCACCGAGCATATATTCTCACCACCACATAGCAAACTCCACCCA
CAAGATCCATGGACAACTCTCTCTCATCGACAGATACATGCGCTCTTGAT
TCGATTCCTTCGATATAATCTGCTCCAAATCGACGCATCGTACGCGCACA
TATGCAAAGCCGCTGCCTGGCGTGCCGAGGAGTGTCCGTGGAATCTTGGT
GTACAAGCGCTGCAAGGTCAACCAGCAGGCGTTCCCATACTGTCTGATGT
TATTCGTGGACTTGATGATGACGTACTTTTGTTCGTTCCATGTCGACATT
ACGAAAAGTCTCTAGTTGACCGTAAAGCTCAAGCCACTGCGATGAAGGCT
TTCTTTGAGCATTATGCGTACGCCGTTGATGGCGCAAGAGCTTTGAGTGC
AGTTATGCTCATTGATTTTTCTGGTCTGCATTTGAGGCAAGTGGACCTCA
GCGCGATGAAGACAGCCATCAACATATTCCTGTCTTACTACCCGGAAGTG
TTAAGAAAGGTCATTCTCGTTAATTACCCGCGTTGGATTCATGGCAGTAA
GTTATTCAGTACACCTTGTATCTTTGTCCTGCACTGTCGTACGACAGTGT
ACTGTGCTTTCTTACGTAACCATCTTGTGAGCTGTTTCTAACTGCTGCGT
CTACCCGTATGTCCTCACCCCTTTCATTGTAGCCTGGAAATGTATTGCGC
CTCTACTTGATGCAAGGACGATTGCAAGAGTAGTGTGGGTTCAAAATGGA
GACGGTCTGCGATCTGAATTGCGGAAATACTTTGATCTAGATAGTCTTCC
GCGTTGGTTGGATGGGGACGGAAAGAACGGAACGATGCGATTATTCTCAG
GATTTCAATTGAACCCGGAGGAATGCAGAGCGAAACTTTGGGCCTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:60989..61985+

>Ggra1428.t1 ID=Ggra1428.t1|Name=Ggra1428.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00000844_pilon:60989..61985+ (Gracilaria gracilis GNS1m male)
ATGACCTCCTACTTTACGAGCTACCGTAGCGCCAAACCGATTGAAGATGC
CCCTCTATCAGCGCTTCCAGAAGACGAATCTGCCGCTCTTGCTACACTCC
AAGCACGCACCGAGCATATATTCTCACCACCACATAGCAAACTCCACCCA
CAAGATCCATGGACAACTCTCTCTCATCGACAGATACATGCGCTCTTGAT
TCGATTCCTTCGATATAATCTGCTCCAAATCGACGCATCGTACGCGCACA
TATGCAAAGCCGCTGCCTGGCGTGCCGAGGAGTGTCCGTGGAATCTTGGT
GTACAAGCGCTGCAAGGTCAACCAGCAGGCGTTCCCATACTGTCTGATGT
TATTCGTGGACTTGATGATGACGTACTTTTGTTCGTTCCATGTCGACATT
ACGAAAAGTCTCTAGTTGACCGTAAAGCTCAAGCCACTGCGATGAAGGCT
TTCTTTGAGCATTATGCGTACGCCGTTGATGGCGCAAGAGCTTTGAGTGC
AGTTATGCTCATTGATTTTTCTGGTCTGCATTTGAGGCAAGTGGACCTCA
GCGCGATGAAGACAGCCATCAACATATTCCTGTCTTACTACCCGGAAGTG
TTAAGAAAGGTCATTCTCGTTAATTACCCGCGTTGGATTCATGGCACCTG
GAAATGTATTGCGCCTCTACTTGATGCAAGGACGATTGCAAGAGTAGTGT
GGGTTCAAAATGGAGACGGTCTGCGATCTGAATTGCGGAAATACTTTGAT
CTAGATAGTCTTCCGCGTTGGTTGGATGGGGACGGAAAGAACGGAACGAT
GCGATTATTCTCAGGATTTCAATTGAACCCGGAGGAATGCAGAGCGAAAC
TTTGGGCCTGA
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