Ggra1427.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1427.t1
Unique NameGgra1427.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:58249..59920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010258496.1
PFAMsPCI
Max annot lvl35493|Streptophyta
KEGG koko:K03036
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000502,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005911,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0008541,GO:0009056,GO:0009057,GO:0009506,GO:0009987,GO:0010035,GO:0010038,GO:0016043,GO:0019538,GO:0019941,GO:0022607,GO:0022624,GO:0030054,GO:0030154,GO:0030163,GO:0032502,GO:0032991,GO:0034622,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046686,GO:0048863,GO:0048869,GO:0050896,GO:0051603,GO:0055044,GO:0065003,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
Evalue2.38e-146
EggNOG OGsCOG5159@1|root,KOG1463@2759|Eukaryota,37NJZ@33090|Viridiplantae,3G8WQ@35493|Streptophyta
Description26S proteasome non-ATPase regulatory subunit
COG categoryO
BRITEko00000,ko00001,ko00002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1427Ggra1427Gracilaria gracilis GNS1m malegenetig00000844_pilon 58249..59920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1427.t1Ggra1427.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 58249..59920 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1427.t1.stop1Ggra1427.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 58249..58251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1427.t1.CDS1Ggra1427.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 58249..58321 -
Ggra1427.t1.CDS2Ggra1427.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 58704..59920 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1427.t1.exon1Ggra1427.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 58249..58321 -
Ggra1427.t1.exon2Ggra1427.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 58704..59920 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1427.t1.intron1Ggra1427.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 58322..58703 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1427.t1.start1Ggra1427.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 59918..59920 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1427.t1 ID=Ggra1427.t1|Name=Ggra1427.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=430bp
MPAEVEDGDISMADTTDEGPLAQMMASAEACSDPVEAQAIYRKLIDYEMS
AAEHSSTSDEDIAKVKETAILKLADLLVSSGNAKKLSELLRSLRPFFSTI
AKAKTAKIVRGLLDSVSKAQDAADLQVNLCKETIQWCREEKRTFLRQRVE
GRLAALYLDNSRFNDALKIINELLREVKRLDDKAHLLEIQLTESRIHHAL
RNIPKARAALTSARTTANAIYVPLNLQAQIDMQAGIIAAEEKDYKTAYSY
FYEGFEGFMSLEDPRAVSNLKYMLLCKIMTGNAEDVPGIVNGSVALKYSG
REVDAMLAVAKAHSERSLESFEKTLKDFKTELSDDPIVQAHLSSLYDTLK
QQNLLRLIEPFSRVEIQHVAELINLELNDVESKLSQMILDKKLNGILDQG
AGCLVVVETSSIDGQTDCWYIDISFTQAQ*
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spliced messenger RNA

>Ggra1427.t1 ID=Ggra1427.t1|Name=Ggra1427.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000844_pilon:58249..59920- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGCCGAAGTCGAGGATGGAGACATTTCCATGGCTGATACAACCGA
TGAAGGCCCGCTCGCACAAATGATGGCCAGCGCGGAGGCATGTTCCGATC
CAGTTGAAGCCCAGGCCATATACCGGAAGCTCATTGATTATGAGATGTCT
GCCGCCGAACATTCATCAACCTCAGATGAAGATATAGCAAAGGTCAAAGA
AACAGCCATTCTCAAGCTTGCCGATCTGCTCGTTTCGTCTGGAAATGCCA
AAAAGCTTTCAGAGCTTCTTAGATCCCTGCGACCATTCTTTTCAACCATT
GCGAAGGCCAAGACAGCCAAGATCGTTCGTGGTCTGCTTGATTCCGTATC
CAAGGCACAAGATGCAGCTGACTTGCAAGTGAATCTTTGCAAGGAAACCA
TTCAATGGTGTCGTGAGGAGAAGAGGACTTTTTTGCGTCAGCGTGTGGAA
GGCAGACTGGCTGCTCTATACCTAGACAATTCCCGTTTCAATGATGCTTT
GAAAATCATCAATGAGCTCTTGCGTGAAGTGAAGCGCTTGGACGATAAGG
CCCATCTGCTTGAAATTCAGCTCACAGAGTCTCGTATTCATCATGCACTG
CGAAATATTCCGAAAGCACGCGCAGCTCTGACTTCTGCGCGGACTACTGC
CAACGCCATCTATGTACCGCTCAATCTTCAGGCACAAATTGATATGCAGG
CTGGAATCATTGCTGCTGAGGAGAAGGACTATAAGACCGCTTATTCTTAC
TTTTATGAAGGTTTTGAGGGATTCATGAGCCTCGAAGATCCAAGAGCCGT
TAGTAATTTGAAGTATATGTTGCTCTGCAAGATCATGACAGGTAATGCGG
AAGATGTCCCGGGAATTGTGAACGGAAGTGTTGCGCTCAAGTACTCTGGG
CGGGAAGTTGACGCCATGCTCGCCGTTGCGAAAGCACATTCGGAGAGAAG
TCTGGAGTCTTTTGAAAAGACTCTCAAAGATTTCAAGACGGAGTTGTCCG
ATGACCCCATCGTCCAAGCCCATCTCAGCTCTTTGTATGACACACTGAAA
CAGCAGAATCTTTTGCGGTTAATCGAACCGTTTTCTCGGGTAGAGATTCA
ACATGTGGCCGAGTTGATCAACCTGGAACTGAATGATGTGGAATCAAAAC
TCTCGCAGATGATACTTGATAAGAAACTAAACGGAATTTTGGACCAAGGT
GCTGGATGCCTGGTTGTGGTAGAGACGTCATCGATTGATGGACAAACCGA
TTGCTGGTATATCGACATATCGTTCACGCAGGCCCAATGA
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protein sequence of Ggra1427.t1

>Ggra1427.t1 ID=Ggra1427.t1|Name=Ggra1427.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=430bp
MPAEVEDGDISMADTTDEGPLAQMMASAEACSDPVEAQAIYRKLIDYEMS
AAEHSSTSDEDIAKVKETAILKLADLLVSSGNAKKLSELLRSLRPFFSTI
AKAKTAKIVRGLLDSVSKAQDAADLQVNLCKETIQWCREEKRTFLRQRVE
GRLAALYLDNSRFNDALKIINELLREVKRLDDKAHLLEIQLTESRIHHAL
RNIPKARAALTSARTTANAIYVPLNLQAQIDMQAGIIAAEEKDYKTAYSY
FYEGFEGFMSLEDPRAVSNLKYMLLCKIMTGNAEDVPGIVNGSVALKYSG
REVDAMLAVAKAHSERSLESFEKTLKDFKTELSDDPIVQAHLSSLYDTLK
QQNLLRLIEPFSRVEIQHVAELINLELNDVESKLSQMILDKKLNGILDQG
AGCLVVVETSSIDGQTDCWYIDISFTQAQ*
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mRNA from alignment at tig00000844_pilon:58249..59920-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1427.t1 ID=Ggra1427.t1|Name=Ggra1427.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1672bp|location=Sequence derived from alignment at tig00000844_pilon:58249..59920- (Gracilaria gracilis GNS1m male)
ATGCCAGCCGAAGTCGAGGATGGAGACATTTCCATGGCTGATACAACCGA
TGAAGGCCCGCTCGCACAAATGATGGCCAGCGCGGAGGCATGTTCCGATC
CAGTTGAAGCCCAGGCCATATACCGGAAGCTCATTGATTATGAGATGTCT
GCCGCCGAACATTCATCAACCTCAGATGAAGATATAGCAAAGGTCAAAGA
AACAGCCATTCTCAAGCTTGCCGATCTGCTCGTTTCGTCTGGAAATGCCA
AAAAGCTTTCAGAGCTTCTTAGATCCCTGCGACCATTCTTTTCAACCATT
GCGAAGGCCAAGACAGCCAAGATCGTTCGTGGTCTGCTTGATTCCGTATC
CAAGGCACAAGATGCAGCTGACTTGCAAGTGAATCTTTGCAAGGAAACCA
TTCAATGGTGTCGTGAGGAGAAGAGGACTTTTTTGCGTCAGCGTGTGGAA
GGCAGACTGGCTGCTCTATACCTAGACAATTCCCGTTTCAATGATGCTTT
GAAAATCATCAATGAGCTCTTGCGTGAAGTGAAGCGCTTGGACGATAAGG
CCCATCTGCTTGAAATTCAGCTCACAGAGTCTCGTATTCATCATGCACTG
CGAAATATTCCGAAAGCACGCGCAGCTCTGACTTCTGCGCGGACTACTGC
CAACGCCATCTATGTACCGCTCAATCTTCAGGCACAAATTGATATGCAGG
CTGGAATCATTGCTGCTGAGGAGAAGGACTATAAGACCGCTTATTCTTAC
TTTTATGAAGGTTTTGAGGGATTCATGAGCCTCGAAGATCCAAGAGCCGT
TAGTAATTTGAAGTATATGTTGCTCTGCAAGATCATGACAGGTAATGCGG
AAGATGTCCCGGGAATTGTGAACGGAAGTGTTGCGCTCAAGTACTCTGGG
CGGGAAGTTGACGCCATGCTCGCCGTTGCGAAAGCACATTCGGAGAGAAG
TCTGGAGTCTTTTGAAAAGACTCTCAAAGATTTCAAGACGGAGTTGTCCG
ATGACCCCATCGTCCAAGCCCATCTCAGCTCTTTGTATGACACACTGAAA
CAGCAGAATCTTTTGCGGTTAATCGAACCGTTTTCTCGGGTAGAGATTCA
ACATGTGGCCGAGTTGATCAACCTGGAACTGAATGATGTGGAATCAAAAC
TCTCGCAGATGATACTTGATAAGAAACTAAACGGAATTTTGGACCAAGGT
GCTGGATGCCTGGTTGTGTACGATGATCTCCCGCTATCAAAGACATACCA
ATCCAGTCTAGACACAATGGCCAATATGGATAATGTCGTGAACTCCCTCT
TTGACAAAGCATCAACATTGAGATAAATCTTCACATGGACGTTTCCCGAA
TTCCCCTTCCAATTGTCTTTCCTACCACTTCTGCCATATGTAAATGCTTG
AGTAGTGTACCTGTGACTCCTCATGCGCAACCAAGAAGTTACAGTGTGTT
TCTCCCTTGTGGGTTGGGTCATCCTACATCGGAGCAGGTTGTTTCATAGA
GCCACAGAGAAATTCATATGCTGCATATGCTGCAACCCGCTTTCTCAGAC
AAACATAGCATTCCGTCCAGCATTCCTGTTTGTGTCTACCGCTGTTCAGG
GTAGAGACGTCATCGATTGATGGACAAACCGATTGCTGGTATATCGACAT
ATCGTTCACGCAGGCCCAATGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:58249..59920-

>Ggra1427.t1 ID=Ggra1427.t1|Name=Ggra1427.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00000844_pilon:58249..59920- (Gracilaria gracilis GNS1m male)
ATGCCAGCCGAAGTCGAGGATGGAGACATTTCCATGGCTGATACAACCGA
TGAAGGCCCGCTCGCACAAATGATGGCCAGCGCGGAGGCATGTTCCGATC
CAGTTGAAGCCCAGGCCATATACCGGAAGCTCATTGATTATGAGATGTCT
GCCGCCGAACATTCATCAACCTCAGATGAAGATATAGCAAAGGTCAAAGA
AACAGCCATTCTCAAGCTTGCCGATCTGCTCGTTTCGTCTGGAAATGCCA
AAAAGCTTTCAGAGCTTCTTAGATCCCTGCGACCATTCTTTTCAACCATT
GCGAAGGCCAAGACAGCCAAGATCGTTCGTGGTCTGCTTGATTCCGTATC
CAAGGCACAAGATGCAGCTGACTTGCAAGTGAATCTTTGCAAGGAAACCA
TTCAATGGTGTCGTGAGGAGAAGAGGACTTTTTTGCGTCAGCGTGTGGAA
GGCAGACTGGCTGCTCTATACCTAGACAATTCCCGTTTCAATGATGCTTT
GAAAATCATCAATGAGCTCTTGCGTGAAGTGAAGCGCTTGGACGATAAGG
CCCATCTGCTTGAAATTCAGCTCACAGAGTCTCGTATTCATCATGCACTG
CGAAATATTCCGAAAGCACGCGCAGCTCTGACTTCTGCGCGGACTACTGC
CAACGCCATCTATGTACCGCTCAATCTTCAGGCACAAATTGATATGCAGG
CTGGAATCATTGCTGCTGAGGAGAAGGACTATAAGACCGCTTATTCTTAC
TTTTATGAAGGTTTTGAGGGATTCATGAGCCTCGAAGATCCAAGAGCCGT
TAGTAATTTGAAGTATATGTTGCTCTGCAAGATCATGACAGGTAATGCGG
AAGATGTCCCGGGAATTGTGAACGGAAGTGTTGCGCTCAAGTACTCTGGG
CGGGAAGTTGACGCCATGCTCGCCGTTGCGAAAGCACATTCGGAGAGAAG
TCTGGAGTCTTTTGAAAAGACTCTCAAAGATTTCAAGACGGAGTTGTCCG
ATGACCCCATCGTCCAAGCCCATCTCAGCTCTTTGTATGACACACTGAAA
CAGCAGAATCTTTTGCGGTTAATCGAACCGTTTTCTCGGGTAGAGATTCA
ACATGTGGCCGAGTTGATCAACCTGGAACTGAATGATGTGGAATCAAAAC
TCTCGCAGATGATACTTGATAAGAAACTAAACGGAATTTTGGACCAAGGT
GCTGGATGCCTGGTTGTGGTAGAGACGTCATCGATTGATGGACAAACCGA
TTGCTGGTATATCGACATATCGTTCACGCAGGCCCAATGA
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