Ggra1426.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1426.t1
Unique NameGgra1426.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length518
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:52863..54475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010535714.1
PFAMsDNA_pol_E_B,Dpoe2NT
Max annot lvl35493|Streptophyta
KEGG rclassRC02795
KEGG koko:K02325
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
GOsGO:0000003,GO:0000228,GO:0000731,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008622,GO:0009058,GO:0009059,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0018130,GO:0019438,GO:0019899,GO:0019985,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048316,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051302,GO:0051716,GO:0051781,GO:0061458,GO:0061695,GO:0065007,GO:0070013,GO:0070182,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue1.97e-81
EggNOG OGsKOG3818@1|root,KOG3818@2759|Eukaryota,37SA8@33090|Viridiplantae,3G7UX@35493|Streptophyta,3HRRA@3699|Brassicales
EC2.7.7.7
DescriptionDNA polymerase epsilon subunit
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1426Ggra1426Gracilaria gracilis GNS1m malegenetig00000844_pilon 52863..54475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1426.t1Ggra1426.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 52863..54475 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1426.t1.start1Ggra1426.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 52863..52865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1426.t1.CDS1Ggra1426.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 52863..54400 +
Ggra1426.t1.CDS2Ggra1426.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 54460..54475 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1426.t1.exon1Ggra1426.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 52863..54400 +
Ggra1426.t1.exon2Ggra1426.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 54460..54475 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1426.t1.intron1Ggra1426.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 54401..54459 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1426.t1.stop1Ggra1426.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 54473..54475 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1426.t1 ID=Ggra1426.t1|Name=Ggra1426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=518bp
MVGRIGNSERKKALRCFRQRGFVVQVGALEHLYAVFDTLDIVDGGFPGFI
EKAIELLSGPVGSIDGIFTKELAASIGERLRRDADRRRHDAKASIEVINT
LTVPRWRPHAISTMQSRTAGRRVEAPRRPLGNAPAKLKGDMFRSRYELML
SKTLRNPKFKPPTSGSLSMSGSSPYFQLTGIESLSGSKGDQLVLGLLTQF
EEGIWYLEDLNGTIKTDLSETFVTSGMHTEASFVIAQGQVTERKGEEPIF
KVQAMGTPPHESREDTIMALGRDANLFGGHFDMSETSDLLRIEEQSLETV
FLFVSDVALDNSRVLAGLRHIWKGFLEDGVVPSVIVLMGNFLSHPFGQKP
DDVSTLCEKFGELGAMVKDEFEELIDKTTFVIVPGPNDPGPGNVLPRPPM
PQMITKRFVEAVGSENVHLAANPCRIRFITQEIVILRDDLMQKMIRHCAV
KPDLTEAGLMHTHLVKTVSDQSYLTPLPLSARPVLWAHDHGLWLFPTPHV
IVLADKVDSYICTLPSG*
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spliced messenger RNA

>Ggra1426.t1 ID=Ggra1426.t1|Name=Ggra1426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00000844_pilon:52863..54475+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGGACGAATAGGAAACTCGGAACGTAAGAAGGCTCTCCGCTGTTT
TAGGCAGCGAGGCTTCGTCGTGCAGGTCGGAGCGCTTGAACATTTATATG
CCGTCTTTGATACTCTGGACATCGTTGATGGTGGGTTTCCGGGTTTTATC
GAGAAAGCGATAGAGTTGCTAAGCGGCCCCGTTGGCTCAATCGATGGGAT
ATTTACCAAAGAGCTGGCAGCTTCTATCGGTGAGAGATTGAGGCGTGATG
CGGATAGAAGAAGACATGATGCGAAGGCAAGTATCGAAGTAATCAACACA
CTCACAGTTCCTCGATGGAGACCTCATGCAATTTCTACAATGCAGTCAAG
AACAGCAGGGAGACGAGTAGAGGCGCCCAGGAGACCTCTTGGTAATGCTC
CTGCAAAGCTCAAGGGCGATATGTTCCGCTCGCGATACGAGCTTATGCTC
AGTAAAACCCTTCGGAATCCCAAATTCAAGCCACCAACGAGTGGGTCGTT
GTCAATGTCGGGGTCTAGTCCATATTTTCAGCTAACAGGAATCGAAAGCC
TGTCTGGAAGCAAAGGAGATCAGTTAGTGCTTGGCCTTTTGACGCAATTT
GAAGAAGGGATCTGGTACTTAGAGGACCTCAACGGTACTATCAAGACAGA
CCTGTCCGAGACGTTTGTGACTTCCGGCATGCATACGGAAGCCAGTTTTG
TCATAGCTCAAGGGCAAGTTACAGAACGCAAAGGGGAAGAGCCAATATTT
AAGGTTCAAGCAATGGGAACCCCTCCTCATGAGTCCCGCGAGGATACCAT
CATGGCACTTGGACGAGACGCCAATCTGTTTGGTGGTCATTTTGATATGA
GTGAGACGTCAGATCTTCTAAGGATTGAAGAGCAGAGCTTAGAGACGGTT
TTTCTTTTCGTTTCAGACGTCGCTTTAGACAATTCTCGAGTTCTCGCTGG
TTTGCGACATATCTGGAAAGGGTTTCTTGAAGATGGTGTCGTTCCTTCTG
TAATAGTTCTCATGGGTAACTTTCTTTCCCACCCCTTTGGGCAAAAACCA
GATGACGTGTCAACTCTATGCGAGAAATTCGGAGAGCTGGGTGCCATGGT
CAAAGACGAGTTTGAAGAACTAATTGACAAAACCACCTTTGTCATAGTCC
CGGGACCAAACGACCCAGGACCAGGAAATGTATTGCCGCGACCTCCGATG
CCGCAGATGATCACTAAACGATTCGTGGAAGCTGTGGGTTCTGAAAACGT
CCACCTTGCTGCCAATCCTTGTCGAATTCGCTTTATTACCCAAGAGATTG
TTATTCTAAGAGACGATCTCATGCAGAAGATGATTCGTCATTGCGCCGTA
AAACCTGATCTGACGGAAGCTGGATTGATGCATACTCATTTAGTGAAAAC
GGTTAGCGACCAGTCATACTTGACTCCGCTTCCACTCTCTGCAAGGCCAG
TCCTCTGGGCTCATGATCATGGCCTCTGGCTTTTCCCTACACCACACGTT
ATAGTTCTCGCAGACAAGGTTGACAGCTACATATGCACTCTACCTTCCGG
CTGA
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protein sequence of Ggra1426.t1

>Ggra1426.t1 ID=Ggra1426.t1|Name=Ggra1426.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=518bp
MVGRIGNSERKKALRCFRQRGFVVQVGALEHLYAVFDTLDIVDGGFPGFI
EKAIELLSGPVGSIDGIFTKELAASIGERLRRDADRRRHDAKASIEVINT
LTVPRWRPHAISTMQSRTAGRRVEAPRRPLGNAPAKLKGDMFRSRYELML
SKTLRNPKFKPPTSGSLSMSGSSPYFQLTGIESLSGSKGDQLVLGLLTQF
EEGIWYLEDLNGTIKTDLSETFVTSGMHTEASFVIAQGQVTERKGEEPIF
KVQAMGTPPHESREDTIMALGRDANLFGGHFDMSETSDLLRIEEQSLETV
FLFVSDVALDNSRVLAGLRHIWKGFLEDGVVPSVIVLMGNFLSHPFGQKP
DDVSTLCEKFGELGAMVKDEFEELIDKTTFVIVPGPNDPGPGNVLPRPPM
PQMITKRFVEAVGSENVHLAANPCRIRFITQEIVILRDDLMQKMIRHCAV
KPDLTEAGLMHTHLVKTVSDQSYLTPLPLSARPVLWAHDHGLWLFPTPHV
IVLADKVDSYICTLPSG*
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mRNA from alignment at tig00000844_pilon:52863..54475+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1426.t1 ID=Ggra1426.t1|Name=Ggra1426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1613bp|location=Sequence derived from alignment at tig00000844_pilon:52863..54475+ (Gracilaria gracilis GNS1m male)
ATGGTAGGACGAATAGGAAACTCGGAACGTAAGAAGGCTCTCCGCTGTTT
TAGGCAGCGAGGCTTCGTCGTGCAGGTCGGAGCGCTTGAACATTTATATG
CCGTCTTTGATACTCTGGACATCGTTGATGGTGGGTTTCCGGGTTTTATC
GAGAAAGCGATAGAGTTGCTAAGCGGCCCCGTTGGCTCAATCGATGGGAT
ATTTACCAAAGAGCTGGCAGCTTCTATCGGTGAGAGATTGAGGCGTGATG
CGGATAGAAGAAGACATGATGCGAAGGCAAGTATCGAAGTAATCAACACA
CTCACAGTTCCTCGATGGAGACCTCATGCAATTTCTACAATGCAGTCAAG
AACAGCAGGGAGACGAGTAGAGGCGCCCAGGAGACCTCTTGGTAATGCTC
CTGCAAAGCTCAAGGGCGATATGTTCCGCTCGCGATACGAGCTTATGCTC
AGTAAAACCCTTCGGAATCCCAAATTCAAGCCACCAACGAGTGGGTCGTT
GTCAATGTCGGGGTCTAGTCCATATTTTCAGCTAACAGGAATCGAAAGCC
TGTCTGGAAGCAAAGGAGATCAGTTAGTGCTTGGCCTTTTGACGCAATTT
GAAGAAGGGATCTGGTACTTAGAGGACCTCAACGGTACTATCAAGACAGA
CCTGTCCGAGACGTTTGTGACTTCCGGCATGCATACGGAAGCCAGTTTTG
TCATAGCTCAAGGGCAAGTTACAGAACGCAAAGGGGAAGAGCCAATATTT
AAGGTTCAAGCAATGGGAACCCCTCCTCATGAGTCCCGCGAGGATACCAT
CATGGCACTTGGACGAGACGCCAATCTGTTTGGTGGTCATTTTGATATGA
GTGAGACGTCAGATCTTCTAAGGATTGAAGAGCAGAGCTTAGAGACGGTT
TTTCTTTTCGTTTCAGACGTCGCTTTAGACAATTCTCGAGTTCTCGCTGG
TTTGCGACATATCTGGAAAGGGTTTCTTGAAGATGGTGTCGTTCCTTCTG
TAATAGTTCTCATGGGTAACTTTCTTTCCCACCCCTTTGGGCAAAAACCA
GATGACGTGTCAACTCTATGCGAGAAATTCGGAGAGCTGGGTGCCATGGT
CAAAGACGAGTTTGAAGAACTAATTGACAAAACCACCTTTGTCATAGTCC
CGGGACCAAACGACCCAGGACCAGGAAATGTATTGCCGCGACCTCCGATG
CCGCAGATGATCACTAAACGATTCGTGGAAGCTGTGGGTTCTGAAAACGT
CCACCTTGCTGCCAATCCTTGTCGAATTCGCTTTATTACCCAAGAGATTG
TTATTCTAAGAGACGATCTCATGCAGAAGATGATTCGTCATTGCGCCGTA
AAACCTGATCTGACGGAAGCTGGATTGATGCATACTCATTTAGTGAAAAC
GGTTAGCGACCAGTCATACTTGACTCCGCTTCCACTCTCTGCAAGGCCAG
TCCTCTGGGCTCATGATCATGGCCTCTGGCTTTTCCCTACACCACACGTT
ATAGTTCTCGCAGACAAGGTTGACAGCTACATATGCACGTACGAGAGAAA
CCTTGGCATGAACCCAGGTTCTTTCAAAACTGACTTTTCTTTCCTAGTCT
ACCTTCCGGCTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:52863..54475+

>Ggra1426.t1 ID=Ggra1426.t1|Name=Ggra1426.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1554bp|location=Sequence derived from alignment at tig00000844_pilon:52863..54475+ (Gracilaria gracilis GNS1m male)
ATGGTAGGACGAATAGGAAACTCGGAACGTAAGAAGGCTCTCCGCTGTTT
TAGGCAGCGAGGCTTCGTCGTGCAGGTCGGAGCGCTTGAACATTTATATG
CCGTCTTTGATACTCTGGACATCGTTGATGGTGGGTTTCCGGGTTTTATC
GAGAAAGCGATAGAGTTGCTAAGCGGCCCCGTTGGCTCAATCGATGGGAT
ATTTACCAAAGAGCTGGCAGCTTCTATCGGTGAGAGATTGAGGCGTGATG
CGGATAGAAGAAGACATGATGCGAAGGCAAGTATCGAAGTAATCAACACA
CTCACAGTTCCTCGATGGAGACCTCATGCAATTTCTACAATGCAGTCAAG
AACAGCAGGGAGACGAGTAGAGGCGCCCAGGAGACCTCTTGGTAATGCTC
CTGCAAAGCTCAAGGGCGATATGTTCCGCTCGCGATACGAGCTTATGCTC
AGTAAAACCCTTCGGAATCCCAAATTCAAGCCACCAACGAGTGGGTCGTT
GTCAATGTCGGGGTCTAGTCCATATTTTCAGCTAACAGGAATCGAAAGCC
TGTCTGGAAGCAAAGGAGATCAGTTAGTGCTTGGCCTTTTGACGCAATTT
GAAGAAGGGATCTGGTACTTAGAGGACCTCAACGGTACTATCAAGACAGA
CCTGTCCGAGACGTTTGTGACTTCCGGCATGCATACGGAAGCCAGTTTTG
TCATAGCTCAAGGGCAAGTTACAGAACGCAAAGGGGAAGAGCCAATATTT
AAGGTTCAAGCAATGGGAACCCCTCCTCATGAGTCCCGCGAGGATACCAT
CATGGCACTTGGACGAGACGCCAATCTGTTTGGTGGTCATTTTGATATGA
GTGAGACGTCAGATCTTCTAAGGATTGAAGAGCAGAGCTTAGAGACGGTT
TTTCTTTTCGTTTCAGACGTCGCTTTAGACAATTCTCGAGTTCTCGCTGG
TTTGCGACATATCTGGAAAGGGTTTCTTGAAGATGGTGTCGTTCCTTCTG
TAATAGTTCTCATGGGTAACTTTCTTTCCCACCCCTTTGGGCAAAAACCA
GATGACGTGTCAACTCTATGCGAGAAATTCGGAGAGCTGGGTGCCATGGT
CAAAGACGAGTTTGAAGAACTAATTGACAAAACCACCTTTGTCATAGTCC
CGGGACCAAACGACCCAGGACCAGGAAATGTATTGCCGCGACCTCCGATG
CCGCAGATGATCACTAAACGATTCGTGGAAGCTGTGGGTTCTGAAAACGT
CCACCTTGCTGCCAATCCTTGTCGAATTCGCTTTATTACCCAAGAGATTG
TTATTCTAAGAGACGATCTCATGCAGAAGATGATTCGTCATTGCGCCGTA
AAACCTGATCTGACGGAAGCTGGATTGATGCATACTCATTTAGTGAAAAC
GGTTAGCGACCAGTCATACTTGACTCCGCTTCCACTCTCTGCAAGGCCAG
TCCTCTGGGCTCATGATCATGGCCTCTGGCTTTTCCCTACACCACACGTT
ATAGTTCTCGCAGACAAGGTTGACAGCTACATATGCACTCTACCTTCCGG
CTGA
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