Ggra1424.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1424.t1
Unique NameGgra1424.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length451
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:45255..48635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706665.1
PFAMsGlyco_transf_25
Max annot lvl2759|Eukaryota
Evalue4.37e-40
EggNOG OGsKOG4179@1|root,KOG4179@2759|Eukaryota
Descriptionprocollagen galactosyltransferase activity
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1424Ggra1424Gracilaria gracilis GNS1m malegenetig00000844_pilon 45255..48635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1424.t1Ggra1424.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 45255..48635 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1424.t1.stop1Ggra1424.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 45255..45257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1424.t1.CDS1Ggra1424.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 45255..46042 -
Ggra1424.t1.CDS2Ggra1424.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 47994..48146 -
Ggra1424.t1.CDS3Ggra1424.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000844_pilon 48224..48635 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1424.t1.exon1Ggra1424.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 45255..46042 -
Ggra1424.t1.exon2Ggra1424.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 47994..48146 -
Ggra1424.t1.exon3Ggra1424.t1.exon3Gracilaria gracilis GNS1m maleexontig00000844_pilon 48224..48635 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1424.t1.intron1Ggra1424.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 46043..47993 -
Ggra1424.t1.intron2Ggra1424.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000844_pilon 48147..48223 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1424.t1.start1Ggra1424.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 48633..48635 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1424.t1 ID=Ggra1424.t1|Name=Ggra1424.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=451bp
METLEKEQENVNSESEDGYQDGDFEESSDEDPVDVAGERNPDELKAAEME
ALHNVSEEEIEGDDTELILFRIPRHTRLRGALKNSKFHISVAENVIDKKL
AVCDGSYVFRDRGKGRCEQIRPIFVTKNENGRPYLQIGKKFSRFVTVTFD
TKITSLSDQRPMPRIYPKKREDLKLKYHPLGKVLPSERANPARWRSQEMK
ESLDAMYVIGMRHCEQRWNHINAWALQENINITPLNATRFDEINLHRPPI
PITGMPRNETVSGGQVACTVSHMRAWRDAFRKKYSHVVVMEDDVKLSPSM
VKRLPRIMHDASLGSSMRGDLPWHFIFLRIHPTTTVPLREEWFGTLTKAE
PGWGSAAYVLSEPGIRFLLTRITSYSFPLDVQFERLQRGEDTLNSEFIAL
NACLKSEDGKISPGCPENVQELSDELRGNCVHHGSQLGIRSRGRQMPGSI
*
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spliced messenger RNA

>Ggra1424.t1 ID=Ggra1424.t1|Name=Ggra1424.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000844_pilon:45255..48635- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACTCTTGAAAAGGAACAAGAAAATGTAAATTCTGAAAGTGAGGA
TGGGTATCAGGATGGAGACTTCGAGGAATCGTCAGACGAAGATCCTGTAG
ATGTTGCTGGGGAGAGAAATCCGGACGAACTTAAGGCTGCAGAGATGGAA
GCTCTGCATAATGTATCGGAAGAAGAGATTGAAGGAGATGATACAGAACT
TATACTGTTCCGCATCCCACGACACACCAGGCTTAGAGGTGCTTTGAAGA
ATTCTAAGTTTCACATTTCTGTCGCTGAAAACGTTATTGACAAAAAGCTT
GCAGTTTGTGACGGTAGCTACGTATTTCGAGATCGTGGGAAAGGGAGATG
TGAGCAGATACGTCCAATATTCGTCACCAAAAACGAAAATGGAAGGCCTT
ACCTGCAAATAGGGAAAAAGTTCTCTAGATTTGTAACAGTGACGTTTGAT
ACGAAAATAACCAGCTTAAGTGACCAAAGACCAATGCCAAGAATATATCC
GAAGAAAAGGGAAGACTTGAAACTCAAGTATCACCCGTTGGGAAAAGTCC
TTCCAAGTGAACGTGCAAATCCCGCACGCTGGCGCTCACAAGAAATGAAA
GAAAGTCTGGATGCTATGTATGTCATCGGCATGCGACATTGTGAACAACG
ATGGAATCATATCAACGCTTGGGCTTTGCAAGAAAATATCAATATAACTC
CGTTGAATGCGACACGGTTCGATGAAATCAATCTACACAGACCTCCAATT
CCAATAACCGGTATGCCCAGAAACGAAACGGTTTCCGGGGGTCAAGTGGC
GTGCACAGTCTCTCACATGCGAGCGTGGCGTGATGCTTTCCGCAAGAAGT
ATTCCCATGTAGTTGTCATGGAAGATGACGTCAAATTATCACCATCAATG
GTGAAAAGGCTGCCTCGAATCATGCACGACGCAAGTCTTGGTTCCAGTAT
GCGAGGTGACTTGCCTTGGCACTTCATCTTTCTTAGAATTCATCCGACAA
CCACTGTTCCCCTTCGCGAGGAATGGTTCGGAACACTGACGAAAGCAGAA
CCTGGCTGGGGTTCGGCTGCTTATGTTTTGTCTGAACCAGGGATCCGCTT
TCTGCTTACGCGAATAACTTCGTATTCCTTTCCTTTGGACGTTCAGTTCG
AGAGATTACAAAGAGGAGAGGACACGTTGAACTCAGAATTTATCGCTCTC
AATGCCTGTCTGAAGTCAGAGGATGGAAAGATATCTCCTGGTTGCCCCGA
AAACGTTCAAGAACTCTCTGATGAATTGCGAGGAAATTGTGTACATCACG
GAAGCCAGTTGGGCATTCGATCGAGAGGAAGGCAGATGCCAGGAAGTATA
TAA
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protein sequence of Ggra1424.t1

>Ggra1424.t1 ID=Ggra1424.t1|Name=Ggra1424.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=451bp
METLEKEQENVNSESEDGYQDGDFEESSDEDPVDVAGERNPDELKAAEME
ALHNVSEEEIEGDDTELILFRIPRHTRLRGALKNSKFHISVAENVIDKKL
AVCDGSYVFRDRGKGRCEQIRPIFVTKNENGRPYLQIGKKFSRFVTVTFD
TKITSLSDQRPMPRIYPKKREDLKLKYHPLGKVLPSERANPARWRSQEMK
ESLDAMYVIGMRHCEQRWNHINAWALQENINITPLNATRFDEINLHRPPI
PITGMPRNETVSGGQVACTVSHMRAWRDAFRKKYSHVVVMEDDVKLSPSM
VKRLPRIMHDASLGSSMRGDLPWHFIFLRIHPTTTVPLREEWFGTLTKAE
PGWGSAAYVLSEPGIRFLLTRITSYSFPLDVQFERLQRGEDTLNSEFIAL
NACLKSEDGKISPGCPENVQELSDELRGNCVHHGSQLGIRSRGRQMPGSI
*
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mRNA from alignment at tig00000844_pilon:45255..48635-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1424.t1 ID=Ggra1424.t1|Name=Ggra1424.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3381bp|location=Sequence derived from alignment at tig00000844_pilon:45255..48635- (Gracilaria gracilis GNS1m male)
ATGGAAACTCTTGAAAAGGAACAAGAAAATGTAAATTCTGAAAGTGAGGA
TGGGTATCAGGATGGAGACTTCGAGGAATCGTCAGACGAAGATCCTGTAG
ATGTTGCTGGGGAGAGAAATCCGGACGAACTTAAGGCTGCAGAGATGGAA
GCTCTGCATAATGTATCGGAAGAAGAGATTGAAGGAGATGATACAGAACT
TATACTGTTCCGCATCCCACGACACACCAGGCTTAGAGGTGCTTTGAAGA
ATTCTAAGTTTCACATTTCTGTCGCTGAAAACGTTATTGACAAAAAGCTT
GCAGTTTGTGACGGTAGCTACGTATTTCGAGATCGTGGGAAAGGGAGATG
TGAGCAGATACGTCCAATATTCGTCACCAAAAACGAAAATGGAAGGCCTT
ACCTGCAAATAGGTAGGTTGCATTCATGTATTCCTTTGTACAGGTGTTTG
CGGTGCCAAAGCGAGTTGCTGACTTTTCTTTTGACACAGGGAAAAAGTTC
TCTAGATTTGTAACAGTGACGTTTGATACGAAAATAACCAGCTTAAGTGA
CCAAAGACCAATGCCAAGAATATATCCGAAGAAAAGGGAAGACTTGAAAC
TCAAGTATCACCCGTTGGGAAAAGTCCTTCCAAGTGAACGTGGTCACAGC
TCTCGAAATGTCAAACTTGAACACTCAATCTAGCTGCTGAAATCAAGAAA
AACATCTTTATAGAGCCGCTACAATAATCTTTGCTGTCCATGACAGGCCT
TGGACCGCAGTTCACAGTTCACAGTTTTTCATTCGGAACTTAAGGGAGAT
GCTCTTCGAATTCTTCTTGACAACACAAAAACAGACCCTACCACTTACTG
ACCAGCTTGACAGATTTGACCACGTCATTCGTACTTGGAGCAGCTTGTCC
TCGGTGCCGGTGCATTATATGACTCGCAGATGAATGCCGATAATGAGCTT
GTTTCTACGTGTCTATGTAGAGGAACAAGCAAGGAGGCTTAATTCTTCTG
ATTTGTATCAAATCTCCATTGTCATCTAGCTGTAGAGTAGATAACTCACT
CTGGGGCTACAGCGCTAGGCAGAGCTCTTTCGTTTCTCTAACGGGGCAGC
TGGTACTTGTCATAAAACATCCCTGTGCTGTTTTGTTGTAGTGAAGTCTT
GTCCTGTGCTTGATGGAACCATGGAATCATCATGAATTAAACCAACACAT
AAGCAGGACCCTTAATGATAGTTCATCTACATGTAGTCCTCGTCTTTCGC
AGAGAGAGGGCAAATGCAATCTTCTCGATAAGGCGTTCTATGGGTATCGC
TCTACCTACTGGTGTGTTCAACATACTATGTTGGTCACATGCAATCTCTA
AGGCAGCTACTACTGCAATCGCCCGCAATCGGATTGTACCCACTCCCAAC
GTTTCGTCGAAACGCGAAATGCCTACGGTCGAAAACACCTAGGGAATCTA
AACTTTCTTGTCGTCGCCAAGTAAGTGTAGTACATACTGGTTAGTATGTT
AGTGGCTGCGGTATTGAAGTGTTATAGGTCGTCCGGTCTTTAGCAGAAAC
CACGCCCTCGAAGGATAAACGTAAGCTTTTTCACATTTAGAAAGTGAGAA
AGAAGTGAACCAGACTAGAGAAGTAACGGAGTCTGTCCAACGAATAGCTG
CGATGAAACGACTTCCACTTACATGTTGTTAACTGCACTATTCTCGTACG
ACAGATAACCGTCAATAAGGAGTACTGTTGCAGTCCACGCTAGAGAAGAA
TGAAACGAAAAGACAACCATCGGCAACCCACGGCAGAAAAAAAGTTCTGT
AAGTTTAATTGCCTTTCGTCGACAGCGCCCTGCAGGGATCTCAATCAAGA
CGTATTGCTCTATGTCGCTTAGAACACCAATCACACACCATTCTACTTCC
CGAAAGTAAGATCCAAGCTTATGCAAGCATGGAGTATGAGCGAGATAATC
TCTTAATGTTTTTCAGCAGTTAATGAAGTTAGGATACGCTATTTGACTTT
GCGAAGCACAAATGGTGATGAATACATATTTGGCTGGCATTGACGAATTT
GCTAAACAAAACTACATTACCATTAAGGTTTTTGGCCTTCCTCAAGATAG
AGAACTATGTTTAAATAGAACTCCTGTCGTCTCGGAATCAGGGGGCGGCG
GACCACAATGAAGAAGAAGAAAACTACAATGCCAGCGAAACAAAATCGGA
ACGACGAAGAACCAAGTTCTTCATTTATCGGTCGGGCCCGATGCACCAGG
CTTTGGACCGATCCTAATTGTTCATGCGCTATACACCCAGTGATGAAGGG
TTATTGTGCGGAATAGAGCGTTCTATATCAGTCACGGTGCCATAGTACCC
CTTCAGCCTTTGGAAATGAGACTGGCATTCTGCGAGCTCCCGATTGAGGG
ACAATACTCTGTACCGTTGGTACTGCTTAGCAGCCTTCGGAATTGATCCT
GACTGGGGCCTGCATGAAGTTGTTCACTTCAATGTCTACGTGGCACGGGA
GCAGAAGGCAACCCAAAATGTGGAAGAGAATCCCGGGTAAGAAGGGCTTC
TGTGTCACAACTTTGCTCTTGTGCTCGATCTTTCCCTGTGCAGCAAATCC
CGCACGCTGGCGCTCACAAGAAATGAAAGAAAGTCTGGATGCTATGTATG
TCATCGGCATGCGACATTGTGAACAACGATGGAATCATATCAACGCTTGG
GCTTTGCAAGAAAATATCAATATAACTCCGTTGAATGCGACACGGTTCGA
TGAAATCAATCTACACAGACCTCCAATTCCAATAACCGGTATGCCCAGAA
ACGAAACGGTTTCCGGGGGTCAAGTGGCGTGCACAGTCTCTCACATGCGA
GCGTGGCGTGATGCTTTCCGCAAGAAGTATTCCCATGTAGTTGTCATGGA
AGATGACGTCAAATTATCACCATCAATGGTGAAAAGGCTGCCTCGAATCA
TGCACGACGCAAGTCTTGGTTCCAGTATGCGAGGTGACTTGCCTTGGCAC
TTCATCTTTCTTAGAATTCATCCGACAACCACTGTTCCCCTTCGCGAGGA
ATGGTTCGGAACACTGACGAAAGCAGAACCTGGCTGGGGTTCGGCTGCTT
ATGTTTTGTCTGAACCAGGGATCCGCTTTCTGCTTACGCGAATAACTTCG
TATTCCTTTCCTTTGGACGTTCAGTTCGAGAGATTACAAAGAGGAGAGGA
CACGTTGAACTCAGAATTTATCGCTCTCAATGCCTGTCTGAAGTCAGAGG
ATGGAAAGATATCTCCTGGTTGCCCCGAAAACGTTCAAGAACTCTCTGAT
GAATTGCGAGGAAATTGTGTACATCACGGAAGCCAGTTGGGCATTCGATC
GAGAGGAAGGCAGATGCCAGGAAGTATATAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:45255..48635-

>Ggra1424.t1 ID=Ggra1424.t1|Name=Ggra1424.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1353bp|location=Sequence derived from alignment at tig00000844_pilon:45255..48635- (Gracilaria gracilis GNS1m male)
ATGGAAACTCTTGAAAAGGAACAAGAAAATGTAAATTCTGAAAGTGAGGA
TGGGTATCAGGATGGAGACTTCGAGGAATCGTCAGACGAAGATCCTGTAG
ATGTTGCTGGGGAGAGAAATCCGGACGAACTTAAGGCTGCAGAGATGGAA
GCTCTGCATAATGTATCGGAAGAAGAGATTGAAGGAGATGATACAGAACT
TATACTGTTCCGCATCCCACGACACACCAGGCTTAGAGGTGCTTTGAAGA
ATTCTAAGTTTCACATTTCTGTCGCTGAAAACGTTATTGACAAAAAGCTT
GCAGTTTGTGACGGTAGCTACGTATTTCGAGATCGTGGGAAAGGGAGATG
TGAGCAGATACGTCCAATATTCGTCACCAAAAACGAAAATGGAAGGCCTT
ACCTGCAAATAGGGAAAAAGTTCTCTAGATTTGTAACAGTGACGTTTGAT
ACGAAAATAACCAGCTTAAGTGACCAAAGACCAATGCCAAGAATATATCC
GAAGAAAAGGGAAGACTTGAAACTCAAGTATCACCCGTTGGGAAAAGTCC
TTCCAAGTGAACGTGCAAATCCCGCACGCTGGCGCTCACAAGAAATGAAA
GAAAGTCTGGATGCTATGTATGTCATCGGCATGCGACATTGTGAACAACG
ATGGAATCATATCAACGCTTGGGCTTTGCAAGAAAATATCAATATAACTC
CGTTGAATGCGACACGGTTCGATGAAATCAATCTACACAGACCTCCAATT
CCAATAACCGGTATGCCCAGAAACGAAACGGTTTCCGGGGGTCAAGTGGC
GTGCACAGTCTCTCACATGCGAGCGTGGCGTGATGCTTTCCGCAAGAAGT
ATTCCCATGTAGTTGTCATGGAAGATGACGTCAAATTATCACCATCAATG
GTGAAAAGGCTGCCTCGAATCATGCACGACGCAAGTCTTGGTTCCAGTAT
GCGAGGTGACTTGCCTTGGCACTTCATCTTTCTTAGAATTCATCCGACAA
CCACTGTTCCCCTTCGCGAGGAATGGTTCGGAACACTGACGAAAGCAGAA
CCTGGCTGGGGTTCGGCTGCTTATGTTTTGTCTGAACCAGGGATCCGCTT
TCTGCTTACGCGAATAACTTCGTATTCCTTTCCTTTGGACGTTCAGTTCG
AGAGATTACAAAGAGGAGAGGACACGTTGAACTCAGAATTTATCGCTCTC
AATGCCTGTCTGAAGTCAGAGGATGGAAAGATATCTCCTGGTTGCCCCGA
AAACGTTCAAGAACTCTCTGATGAATTGCGAGGAAATTGTGTACATCACG
GAAGCCAGTTGGGCATTCGATCGAGAGGAAGGCAGATGCCAGGAAGTATA
TAA
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