Ggra1420.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1420.t1
Unique Name	Ggra1420.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	448

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:34898..36241 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	102107.XP_008221805.1
PFAMs	WD40
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12816
KEGG Pathway	ko03040,map03040
KEGG Module	M00355
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0071007,GO:0071013,GO:1902494,GO:1990904
Evalue	6.94e-119
EggNOG OGs	KOG0282@1\|root,KOG0282@2759\|Eukaryota,37IZX@33090\|Viridiplantae,3G7NG@35493\|Streptophyta,4JF7Q@91835\|fabids
Description	pre-mRNA-processing factor
COG category	S
BRITE	ko00000,ko00001,ko00002,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1420	Ggra1420	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 34898..36241 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1420.t1.start1	Ggra1420.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 34898..34900 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1420.t1.CDS1	Ggra1420.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 34898..36241 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1420.t1.exon1	Ggra1420.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 34898..36241 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1420.t1.stop1	Ggra1420.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 36239..36241 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1420.t1	Ggra1420.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 34898..36241 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:34898..36241+
coding sequence from alignment at tig00000844_pilon:34898..36241+

mRNA sequence

>Ggra1420.t1 ID=Ggra1420.t1|Name=Ggra1420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=448bp
MDMLTAYSHNSSDAESSSNTPPASPEPSKRVVPTGTIETIVFDERQFSSL
ERSFELPDTKGAPKKRPRSPLRNPDDQLKATDKATIVKKPRASTSQPPRP
STSSVLVPKSEFHLSSANDYQNRTWNAPPSTSRTFADLEQYTPYIPKRVV
ASENAHPRGASVVHFSPGHGHLVLSAGNDGSAKVWLSNSKKLARSYVGHS
KAIRDAVFNHSGSHFLTAAFDKSVLLWDVESGKVLSSFKTSGAPLCVRFC
PPDPSQFLVGCEDKKVLQIDVRDASNVIQTYDEHMGRVNSISFIDSGRRF
VTSADDKVLRVWEYGVPVVIKYISGPTAHSMPVTLVHPNQKWLACQSMDN
TIRLFSTSRRFKRNEKRIFRGHLVAGYACGMSTSPDGRYLVSGDSLGRLF
YWDWKTARLFRAVDAHKKPCCSSVDWHPTQSSFVVSCGWDGNIMFWD*

spliced messenger RNA

>Ggra1420.t1 ID=Ggra1420.t1|Name=Ggra1420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000844_pilon:34898..36241+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATGCTTACCGCCTATTCTCACAATTCCTCGGATGCAGAAAGCTC
GTCAAACACTCCGCCAGCTTCACCAGAGCCATCGAAACGCGTTGTCCCCA
CCGGCACAATAGAGACCATCGTGTTCGACGAACGTCAATTTTCCTCTCTA
GAACGGTCCTTTGAGCTGCCCGATACTAAAGGAGCCCCCAAGAAGCGACC
TAGATCTCCGCTTCGAAACCCTGACGATCAATTGAAAGCTACTGACAAAG
CGACAATCGTGAAGAAACCGCGTGCTTCCACAAGTCAACCACCTCGCCCG
TCCACATCGTCCGTGCTAGTTCCAAAATCCGAATTCCATTTATCATCTGC
GAATGACTATCAGAATCGTACATGGAATGCGCCACCTTCAACAAGTCGCA
CGTTTGCAGATTTGGAACAATATACACCTTACATACCAAAGCGTGTTGTT
GCGAGCGAAAACGCACATCCGCGGGGTGCTTCTGTTGTTCACTTCAGCCC
TGGTCACGGTCATCTAGTTTTATCTGCGGGAAATGATGGAAGTGCCAAAG
TGTGGCTATCTAACTCGAAAAAACTGGCGAGGAGCTATGTAGGTCATTCG
AAAGCCATCCGGGACGCTGTTTTTAATCATTCTGGATCACACTTTCTCAC
TGCCGCCTTTGACAAAAGTGTTCTTTTGTGGGATGTTGAATCAGGAAAAG
TTCTTTCCTCTTTCAAGACATCGGGTGCACCACTTTGTGTACGCTTCTGT
CCACCCGACCCGTCGCAGTTTCTGGTGGGTTGCGAGGATAAGAAAGTGCT
ACAGATTGATGTCCGAGATGCGTCGAATGTAATCCAGACTTACGACGAGC
ACATGGGACGTGTCAACTCTATATCGTTCATTGACTCTGGTCGTCGCTTT
GTAACAAGTGCGGATGATAAGGTTCTCAGAGTGTGGGAGTACGGTGTTCC
AGTAGTTATCAAATACATATCGGGTCCTACCGCTCATAGTATGCCGGTAA
CGTTAGTTCATCCAAACCAGAAATGGTTGGCCTGCCAAAGCATGGATAAC
ACGATTCGTCTCTTTTCCACGAGCAGAAGGTTCAAGCGTAACGAGAAGAG
AATATTTCGTGGTCATCTTGTTGCTGGCTATGCATGCGGTATGAGCACAT
CACCAGATGGGAGGTACCTCGTCAGCGGCGATAGTCTCGGAAGGTTGTTT
TATTGGGACTGGAAGACAGCGCGCTTGTTTCGCGCAGTAGATGCACACAA
GAAGCCTTGTTGCAGTTCCGTGGATTGGCATCCGACGCAGTCGTCTTTTG
TTGTCTCATGTGGGTGGGACGGCAATATCATGTTCTGGGACTGA

protein sequence of Ggra1420.t1

>Ggra1420.t1 ID=Ggra1420.t1|Name=Ggra1420.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=448bp
MDMLTAYSHNSSDAESSSNTPPASPEPSKRVVPTGTIETIVFDERQFSSL
ERSFELPDTKGAPKKRPRSPLRNPDDQLKATDKATIVKKPRASTSQPPRP
STSSVLVPKSEFHLSSANDYQNRTWNAPPSTSRTFADLEQYTPYIPKRVV
ASENAHPRGASVVHFSPGHGHLVLSAGNDGSAKVWLSNSKKLARSYVGHS
KAIRDAVFNHSGSHFLTAAFDKSVLLWDVESGKVLSSFKTSGAPLCVRFC
PPDPSQFLVGCEDKKVLQIDVRDASNVIQTYDEHMGRVNSISFIDSGRRF
VTSADDKVLRVWEYGVPVVIKYISGPTAHSMPVTLVHPNQKWLACQSMDN
TIRLFSTSRRFKRNEKRIFRGHLVAGYACGMSTSPDGRYLVSGDSLGRLF
YWDWKTARLFRAVDAHKKPCCSSVDWHPTQSSFVVSCGWDGNIMFWD*

mRNA from alignment at tig00000844_pilon:34898..36241+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1420.t1 ID=Ggra1420.t1|Name=Ggra1420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000844_pilon:34898..36241+ (Gracilaria gracilis GNS1m male)
ATGGACATGCTTACCGCCTATTCTCACAATTCCTCGGATGCAGAAAGCTC
GTCAAACACTCCGCCAGCTTCACCAGAGCCATCGAAACGCGTTGTCCCCA
CCGGCACAATAGAGACCATCGTGTTCGACGAACGTCAATTTTCCTCTCTA
GAACGGTCCTTTGAGCTGCCCGATACTAAAGGAGCCCCCAAGAAGCGACC
TAGATCTCCGCTTCGAAACCCTGACGATCAATTGAAAGCTACTGACAAAG
CGACAATCGTGAAGAAACCGCGTGCTTCCACAAGTCAACCACCTCGCCCG
TCCACATCGTCCGTGCTAGTTCCAAAATCCGAATTCCATTTATCATCTGC
GAATGACTATCAGAATCGTACATGGAATGCGCCACCTTCAACAAGTCGCA
CGTTTGCAGATTTGGAACAATATACACCTTACATACCAAAGCGTGTTGTT
GCGAGCGAAAACGCACATCCGCGGGGTGCTTCTGTTGTTCACTTCAGCCC
TGGTCACGGTCATCTAGTTTTATCTGCGGGAAATGATGGAAGTGCCAAAG
TGTGGCTATCTAACTCGAAAAAACTGGCGAGGAGCTATGTAGGTCATTCG
AAAGCCATCCGGGACGCTGTTTTTAATCATTCTGGATCACACTTTCTCAC
TGCCGCCTTTGACAAAAGTGTTCTTTTGTGGGATGTTGAATCAGGAAAAG
TTCTTTCCTCTTTCAAGACATCGGGTGCACCACTTTGTGTACGCTTCTGT
CCACCCGACCCGTCGCAGTTTCTGGTGGGTTGCGAGGATAAGAAAGTGCT
ACAGATTGATGTCCGAGATGCGTCGAATGTAATCCAGACTTACGACGAGC
ACATGGGACGTGTCAACTCTATATCGTTCATTGACTCTGGTCGTCGCTTT
GTAACAAGTGCGGATGATAAGGTTCTCAGAGTGTGGGAGTACGGTGTTCC
AGTAGTTATCAAATACATATCGGGTCCTACCGCTCATAGTATGCCGGTAA
CGTTAGTTCATCCAAACCAGAAATGGTTGGCCTGCCAAAGCATGGATAAC
ACGATTCGTCTCTTTTCCACGAGCAGAAGGTTCAAGCGTAACGAGAAGAG
AATATTTCGTGGTCATCTTGTTGCTGGCTATGCATGCGGTATGAGCACAT
CACCAGATGGGAGGTACCTCGTCAGCGGCGATAGTCTCGGAAGGTTGTTT
TATTGGGACTGGAAGACAGCGCGCTTGTTTCGCGCAGTAGATGCACACAA
GAAGCCTTGTTGCAGTTCCGTGGATTGGCATCCGACGCAGTCGTCTTTTG
TTGTCTCATGTGGGTGGGACGGCAATATCATGTTCTGGGACTGA

Coding sequence (CDS) from alignment at tig00000844_pilon:34898..36241+

>Ggra1420.t1 ID=Ggra1420.t1|Name=Ggra1420.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00000844_pilon:34898..36241+ (Gracilaria gracilis GNS1m male)
ATGGACATGCTTACCGCCTATTCTCACAATTCCTCGGATGCAGAAAGCTC
GTCAAACACTCCGCCAGCTTCACCAGAGCCATCGAAACGCGTTGTCCCCA
CCGGCACAATAGAGACCATCGTGTTCGACGAACGTCAATTTTCCTCTCTA
GAACGGTCCTTTGAGCTGCCCGATACTAAAGGAGCCCCCAAGAAGCGACC
TAGATCTCCGCTTCGAAACCCTGACGATCAATTGAAAGCTACTGACAAAG
CGACAATCGTGAAGAAACCGCGTGCTTCCACAAGTCAACCACCTCGCCCG
TCCACATCGTCCGTGCTAGTTCCAAAATCCGAATTCCATTTATCATCTGC
GAATGACTATCAGAATCGTACATGGAATGCGCCACCTTCAACAAGTCGCA
CGTTTGCAGATTTGGAACAATATACACCTTACATACCAAAGCGTGTTGTT
GCGAGCGAAAACGCACATCCGCGGGGTGCTTCTGTTGTTCACTTCAGCCC
TGGTCACGGTCATCTAGTTTTATCTGCGGGAAATGATGGAAGTGCCAAAG
TGTGGCTATCTAACTCGAAAAAACTGGCGAGGAGCTATGTAGGTCATTCG
AAAGCCATCCGGGACGCTGTTTTTAATCATTCTGGATCACACTTTCTCAC
TGCCGCCTTTGACAAAAGTGTTCTTTTGTGGGATGTTGAATCAGGAAAAG
TTCTTTCCTCTTTCAAGACATCGGGTGCACCACTTTGTGTACGCTTCTGT
CCACCCGACCCGTCGCAGTTTCTGGTGGGTTGCGAGGATAAGAAAGTGCT
ACAGATTGATGTCCGAGATGCGTCGAATGTAATCCAGACTTACGACGAGC
ACATGGGACGTGTCAACTCTATATCGTTCATTGACTCTGGTCGTCGCTTT
GTAACAAGTGCGGATGATAAGGTTCTCAGAGTGTGGGAGTACGGTGTTCC
AGTAGTTATCAAATACATATCGGGTCCTACCGCTCATAGTATGCCGGTAA
CGTTAGTTCATCCAAACCAGAAATGGTTGGCCTGCCAAAGCATGGATAAC
ACGATTCGTCTCTTTTCCACGAGCAGAAGGTTCAAGCGTAACGAGAAGAG
AATATTTCGTGGTCATCTTGTTGCTGGCTATGCATGCGGTATGAGCACAT
CACCAGATGGGAGGTACCTCGTCAGCGGCGATAGTCTCGGAAGGTTGTTT
TATTGGGACTGGAAGACAGCGCGCTTGTTTCGCGCAGTAGATGCACACAA
GAAGCCTTGTTGCAGTTCCGTGGATTGGCATCCGACGCAGTCGTCTTTTG
TTGTCTCATGTGGGTGGGACGGCAATATCATGTTCTGGGACTGA