Ggra1419.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1419.t1
Unique NameGgra1419.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:30222..31337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX53024
PFAMsEamA
Max annot lvl2759|Eukaryota
Evalue1.58e-72
EggNOG OGsCOG0697@1|root,2QPTR@2759|Eukaryota
DescriptionEamA-like transporter family
COG categoryEG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1419Ggra1419Gracilaria gracilis GNS1m malegenetig00000844_pilon 30222..31337 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1419.t1.stop1Ggra1419.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 30222..30224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1419.t1.CDS1Ggra1419.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 30222..31337 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1419.t1.exon1Ggra1419.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 30222..31337 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1419.t1.start1Ggra1419.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 31335..31337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1419.t1Ggra1419.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 30222..31337 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1419.t1 ID=Ggra1419.t1|Name=Ggra1419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp
MHANLPKRPRLTLAFSQPLRVSFPRIRGSALCATSVRGVGFGGQFGCVVC
ALRPPESPGTGSRVPVSAKGSDTRISQSDTPFQLSPVSTLFVLNFVTVLW
GTQHALVKSTLDALSPQALNLLRFSLASLLALPSLPAPTSANRNVYKTGL
ELSLYLFLGYALQAQSLLTTSASRSGFLLYLNVKFVPILGRFLYGRSISA
LTWASAAMALTGTLLLTWDGTPPNVGDLGSVAAAVASAMFILRLEKAAQL
RAASVNSVALVGVSALCGLWCLASPPSQLIPNNGAELGAILYLGIVTTAL
SNYLQTVAQRHISAERAAVVFALDPVYGALFASVWLGEHIGTQGIAGAAV
IVFAAMLSNWEVIVKKKAEQE*
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spliced messenger RNA

>Ggra1419.t1 ID=Ggra1419.t1|Name=Ggra1419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000844_pilon:30222..31337- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCCAATCTCCCTAAGCGACCACGCCTCACGCTCGCTTTTTCGCA
ACCGCTCCGCGTTTCTTTCCCGCGCATCCGCGGCTCTGCTCTCTGTGCGA
CTTCGGTGAGGGGCGTAGGCTTTGGGGGGCAGTTTGGATGTGTGGTTTGC
GCGTTACGACCTCCAGAAAGCCCTGGAACTGGGTCTCGAGTTCCGGTATC
CGCAAAAGGGTCGGACACCCGCATTTCTCAGTCAGACACCCCTTTTCAGC
TTTCTCCTGTTTCCACCTTATTCGTGCTTAACTTCGTCACTGTGTTGTGG
GGAACTCAACACGCGCTCGTCAAGAGCACCCTGGACGCACTTTCACCGCA
AGCATTGAATCTTTTGCGGTTTTCACTCGCGTCTCTTCTGGCGCTGCCTT
CGTTACCGGCGCCAACTTCGGCGAATAGAAATGTGTACAAAACGGGGCTG
GAACTTTCGTTGTATTTGTTTCTTGGGTATGCATTACAGGCACAGAGTCT
TCTTACAACTTCTGCCTCGCGTTCTGGCTTTCTGCTGTATCTCAACGTCA
AGTTTGTTCCGATTCTCGGCCGCTTTCTGTACGGGAGGAGCATCTCCGCT
CTAACGTGGGCGAGCGCTGCTATGGCGCTGACGGGCACGCTCTTGTTGAC
ATGGGACGGTACTCCCCCGAACGTAGGTGACCTGGGCAGCGTTGCCGCAG
CTGTAGCAAGTGCTATGTTCATCTTGCGTCTGGAAAAGGCCGCGCAACTA
CGGGCTGCGTCTGTCAATTCTGTTGCACTTGTTGGCGTGTCAGCGCTATG
CGGCTTGTGGTGTTTGGCGTCTCCTCCTTCACAGCTTATCCCCAACAATG
GTGCCGAGCTGGGCGCCATTCTTTACCTTGGAATCGTCACCACAGCGTTG
AGTAACTACCTCCAAACTGTGGCGCAAAGACATATTAGTGCGGAACGTGC
TGCTGTTGTGTTTGCTTTAGACCCTGTTTATGGCGCGTTGTTTGCGAGTG
TTTGGCTTGGGGAGCACATTGGTACTCAGGGTATTGCTGGTGCTGCCGTC
ATCGTCTTTGCAGCTATGCTGTCGAACTGGGAAGTCATTGTGAAGAAGAA
AGCTGAGCAAGAATGA
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protein sequence of Ggra1419.t1

>Ggra1419.t1 ID=Ggra1419.t1|Name=Ggra1419.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=372bp
MHANLPKRPRLTLAFSQPLRVSFPRIRGSALCATSVRGVGFGGQFGCVVC
ALRPPESPGTGSRVPVSAKGSDTRISQSDTPFQLSPVSTLFVLNFVTVLW
GTQHALVKSTLDALSPQALNLLRFSLASLLALPSLPAPTSANRNVYKTGL
ELSLYLFLGYALQAQSLLTTSASRSGFLLYLNVKFVPILGRFLYGRSISA
LTWASAAMALTGTLLLTWDGTPPNVGDLGSVAAAVASAMFILRLEKAAQL
RAASVNSVALVGVSALCGLWCLASPPSQLIPNNGAELGAILYLGIVTTAL
SNYLQTVAQRHISAERAAVVFALDPVYGALFASVWLGEHIGTQGIAGAAV
IVFAAMLSNWEVIVKKKAEQE*
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mRNA from alignment at tig00000844_pilon:30222..31337-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1419.t1 ID=Ggra1419.t1|Name=Ggra1419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000844_pilon:30222..31337- (Gracilaria gracilis GNS1m male)
ATGCACGCCAATCTCCCTAAGCGACCACGCCTCACGCTCGCTTTTTCGCA
ACCGCTCCGCGTTTCTTTCCCGCGCATCCGCGGCTCTGCTCTCTGTGCGA
CTTCGGTGAGGGGCGTAGGCTTTGGGGGGCAGTTTGGATGTGTGGTTTGC
GCGTTACGACCTCCAGAAAGCCCTGGAACTGGGTCTCGAGTTCCGGTATC
CGCAAAAGGGTCGGACACCCGCATTTCTCAGTCAGACACCCCTTTTCAGC
TTTCTCCTGTTTCCACCTTATTCGTGCTTAACTTCGTCACTGTGTTGTGG
GGAACTCAACACGCGCTCGTCAAGAGCACCCTGGACGCACTTTCACCGCA
AGCATTGAATCTTTTGCGGTTTTCACTCGCGTCTCTTCTGGCGCTGCCTT
CGTTACCGGCGCCAACTTCGGCGAATAGAAATGTGTACAAAACGGGGCTG
GAACTTTCGTTGTATTTGTTTCTTGGGTATGCATTACAGGCACAGAGTCT
TCTTACAACTTCTGCCTCGCGTTCTGGCTTTCTGCTGTATCTCAACGTCA
AGTTTGTTCCGATTCTCGGCCGCTTTCTGTACGGGAGGAGCATCTCCGCT
CTAACGTGGGCGAGCGCTGCTATGGCGCTGACGGGCACGCTCTTGTTGAC
ATGGGACGGTACTCCCCCGAACGTAGGTGACCTGGGCAGCGTTGCCGCAG
CTGTAGCAAGTGCTATGTTCATCTTGCGTCTGGAAAAGGCCGCGCAACTA
CGGGCTGCGTCTGTCAATTCTGTTGCACTTGTTGGCGTGTCAGCGCTATG
CGGCTTGTGGTGTTTGGCGTCTCCTCCTTCACAGCTTATCCCCAACAATG
GTGCCGAGCTGGGCGCCATTCTTTACCTTGGAATCGTCACCACAGCGTTG
AGTAACTACCTCCAAACTGTGGCGCAAAGACATATTAGTGCGGAACGTGC
TGCTGTTGTGTTTGCTTTAGACCCTGTTTATGGCGCGTTGTTTGCGAGTG
TTTGGCTTGGGGAGCACATTGGTACTCAGGGTATTGCTGGTGCTGCCGTC
ATCGTCTTTGCAGCTATGCTGTCGAACTGGGAAGTCATTGTGAAGAAGAA
AGCTGAGCAAGAATGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:30222..31337-

>Ggra1419.t1 ID=Ggra1419.t1|Name=Ggra1419.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1116bp|location=Sequence derived from alignment at tig00000844_pilon:30222..31337- (Gracilaria gracilis GNS1m male)
ATGCACGCCAATCTCCCTAAGCGACCACGCCTCACGCTCGCTTTTTCGCA
ACCGCTCCGCGTTTCTTTCCCGCGCATCCGCGGCTCTGCTCTCTGTGCGA
CTTCGGTGAGGGGCGTAGGCTTTGGGGGGCAGTTTGGATGTGTGGTTTGC
GCGTTACGACCTCCAGAAAGCCCTGGAACTGGGTCTCGAGTTCCGGTATC
CGCAAAAGGGTCGGACACCCGCATTTCTCAGTCAGACACCCCTTTTCAGC
TTTCTCCTGTTTCCACCTTATTCGTGCTTAACTTCGTCACTGTGTTGTGG
GGAACTCAACACGCGCTCGTCAAGAGCACCCTGGACGCACTTTCACCGCA
AGCATTGAATCTTTTGCGGTTTTCACTCGCGTCTCTTCTGGCGCTGCCTT
CGTTACCGGCGCCAACTTCGGCGAATAGAAATGTGTACAAAACGGGGCTG
GAACTTTCGTTGTATTTGTTTCTTGGGTATGCATTACAGGCACAGAGTCT
TCTTACAACTTCTGCCTCGCGTTCTGGCTTTCTGCTGTATCTCAACGTCA
AGTTTGTTCCGATTCTCGGCCGCTTTCTGTACGGGAGGAGCATCTCCGCT
CTAACGTGGGCGAGCGCTGCTATGGCGCTGACGGGCACGCTCTTGTTGAC
ATGGGACGGTACTCCCCCGAACGTAGGTGACCTGGGCAGCGTTGCCGCAG
CTGTAGCAAGTGCTATGTTCATCTTGCGTCTGGAAAAGGCCGCGCAACTA
CGGGCTGCGTCTGTCAATTCTGTTGCACTTGTTGGCGTGTCAGCGCTATG
CGGCTTGTGGTGTTTGGCGTCTCCTCCTTCACAGCTTATCCCCAACAATG
GTGCCGAGCTGGGCGCCATTCTTTACCTTGGAATCGTCACCACAGCGTTG
AGTAACTACCTCCAAACTGTGGCGCAAAGACATATTAGTGCGGAACGTGC
TGCTGTTGTGTTTGCTTTAGACCCTGTTTATGGCGCGTTGTTTGCGAGTG
TTTGGCTTGGGGAGCACATTGGTACTCAGGGTATTGCTGGTGCTGCCGTC
ATCGTCTTTGCAGCTATGCTGTCGAACTGGGAAGTCATTGTGAAGAAGAA
AGCTGAGCAAGAATGA
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