Ggra1418.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1418.t1
Unique Name	Ggra1418.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	574

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:25913..27634 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1418	Ggra1418	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 25913..27634 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1418.t1.stop1	Ggra1418.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 25913..25915 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1418.t1.CDS1	Ggra1418.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 25913..27634 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1418.t1.exon1	Ggra1418.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 25913..27634 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1418.t1.start1	Ggra1418.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 27632..27634 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1418.t1	Ggra1418.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 25913..27634 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:25913..27634-
coding sequence from alignment at tig00000844_pilon:25913..27634-

mRNA sequence

>Ggra1418.t1 ID=Ggra1418.t1|Name=Ggra1418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=574bp
MVPPPVNKFRTSIERAVRAFSFHRASTDSSPPQPSQQPSVAPSTPPYSPQ
PNVQPTRSFPNLSRIRHSSQYSQRPPRPHRPLKFVPRRNTHSSRSSLSLR
NFSLSHISATQSASPSTSESSDSPHSTSPPTNANASLPKPHVFRRLSAHR
MRSLSLGHRASDDAQDLDNKPWSSGGPALFSRSPTEDSVSWSRIFASSFD
LRDKTRWRKRNYSYSCSDFEIEEEHHIVEIGQRLPDRCHSGTEEDVFGRR
RRDFSIASFSLPAVSASRLLACDTNHSPLPPPPQPRADDVSTRPSSIKHS
SKSSAERRVKEKQKHLLDTPMTKPDRNSKSALIKEATNDDFDEQEAIRHI
TKAIDSSKGRLRKSANMSKAFTSVIKSGDGFLRKSELIQQTLNSEDSKDP
SMIILLDPESCEPSPIRVEGASSASEESASVENMKSVHVVPPPNIGFSTS
MTARQCAATLETILRDMACKVSRYAEEEHGKNSIVKLKASRFSGGARLLD
RKVKVLVTVREEDHIRTSVSFRRVATMYGNKDAHFPMCCEIRERFQREWP
AVVEALYIRVESNQVLSTRSAEG*

spliced messenger RNA

>Ggra1418.t1 ID=Ggra1418.t1|Name=Ggra1418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1722bp|location=Sequence derived from alignment at tig00000844_pilon:25913..27634- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCCTCCGCCCGTCAACAAGTTCCGCACCTCCATCGAGCGTGCGGT
ACGCGCCTTCAGCTTTCACAGAGCGTCCACCGACTCGTCTCCCCCCCAAC
CTTCCCAACAACCTTCCGTCGCTCCCTCCACTCCGCCCTACTCCCCGCAA
CCCAACGTACAACCCACTCGTTCCTTCCCCAATCTCTCCCGCATCCGCCA
TTCCTCACAGTACTCGCAGCGTCCACCACGCCCTCATCGCCCGCTCAAAT
TCGTGCCCCGTCGCAATACCCATTCATCGCGCTCGTCGCTCTCGCTGCGA
AACTTCTCTCTCAGTCACATTTCCGCCACACAAAGTGCGTCGCCCTCCAC
ATCCGAGTCTTCCGATTCGCCGCACTCCACATCGCCACCAACAAATGCCA
ATGCGTCGCTCCCCAAGCCCCACGTGTTCCGTCGCCTCAGCGCGCATCGC
ATGAGGAGTCTTTCGCTGGGTCATCGCGCGTCAGACGACGCGCAAGACCT
GGACAACAAGCCGTGGAGCAGCGGAGGACCCGCTCTTTTCTCGCGATCTC
CCACCGAAGATAGCGTCAGTTGGAGTCGTATCTTCGCCTCTTCGTTCGAC
CTCAGAGACAAAACTCGCTGGAGAAAGAGGAACTATTCGTACTCGTGCTC
CGACTTTGAAATTGAAGAGGAGCACCATATCGTGGAGATTGGCCAGCGTC
TGCCGGACAGGTGCCATTCCGGCACGGAAGAGGACGTGTTTGGGAGACGT
CGTCGTGACTTTTCCATCGCTTCGTTCTCGTTACCTGCTGTGTCGGCGTC
GCGCCTTCTTGCATGTGATACCAATCACTCTCCGTTGCCGCCGCCACCAC
AACCGCGTGCAGACGACGTCAGTACCAGACCGTCATCCATCAAACATTCG
TCCAAGTCCAGTGCGGAGCGTCGGGTCAAAGAGAAGCAGAAGCACCTATT
GGACACGCCCATGACCAAACCAGATCGTAACAGCAAGTCGGCTCTGATCA
AAGAAGCCACCAACGACGACTTTGATGAACAAGAAGCCATTCGCCACATC
ACAAAAGCCATCGACTCTTCCAAAGGGCGTCTTCGAAAAAGCGCAAACAT
GAGCAAAGCATTCACGTCGGTGATCAAGAGTGGCGACGGTTTCCTCAGAA
AGAGTGAACTGATTCAACAGACTCTCAACAGCGAGGATAGTAAGGACCCT
TCCATGATCATCCTGCTGGACCCCGAGTCATGTGAGCCCAGCCCGATACG
CGTGGAGGGTGCTAGTAGCGCTTCTGAGGAAAGTGCGTCGGTGGAGAATA
TGAAAAGTGTGCACGTGGTGCCTCCGCCAAACATCGGCTTCAGTACAAGT
ATGACTGCGCGCCAATGCGCGGCCACACTGGAGACGATCCTGAGAGATAT
GGCGTGTAAGGTGTCTCGCTATGCCGAAGAGGAGCATGGCAAGAACAGTA
TTGTGAAGCTGAAAGCGTCTCGATTCTCAGGTGGGGCTCGTCTGTTGGAT
AGAAAGGTGAAAGTTTTGGTGACGGTTAGGGAGGAGGACCATATTCGAAC
GTCGGTGTCATTCAGAAGAGTGGCTACGATGTACGGGAACAAGGATGCTC
ATTTCCCGATGTGTTGCGAGATTAGGGAACGGTTTCAACGAGAGTGGCCG
GCGGTTGTTGAAGCTCTATATATTCGTGTTGAAAGCAATCAGGTGCTGTC
GACGAGAAGTGCGGAGGGTTAG

protein sequence of Ggra1418.t1

>Ggra1418.t1 ID=Ggra1418.t1|Name=Ggra1418.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=574bp
MVPPPVNKFRTSIERAVRAFSFHRASTDSSPPQPSQQPSVAPSTPPYSPQ
PNVQPTRSFPNLSRIRHSSQYSQRPPRPHRPLKFVPRRNTHSSRSSLSLR
NFSLSHISATQSASPSTSESSDSPHSTSPPTNANASLPKPHVFRRLSAHR
MRSLSLGHRASDDAQDLDNKPWSSGGPALFSRSPTEDSVSWSRIFASSFD
LRDKTRWRKRNYSYSCSDFEIEEEHHIVEIGQRLPDRCHSGTEEDVFGRR
RRDFSIASFSLPAVSASRLLACDTNHSPLPPPPQPRADDVSTRPSSIKHS
SKSSAERRVKEKQKHLLDTPMTKPDRNSKSALIKEATNDDFDEQEAIRHI
TKAIDSSKGRLRKSANMSKAFTSVIKSGDGFLRKSELIQQTLNSEDSKDP
SMIILLDPESCEPSPIRVEGASSASEESASVENMKSVHVVPPPNIGFSTS
MTARQCAATLETILRDMACKVSRYAEEEHGKNSIVKLKASRFSGGARLLD
RKVKVLVTVREEDHIRTSVSFRRVATMYGNKDAHFPMCCEIRERFQREWP
AVVEALYIRVESNQVLSTRSAEG*

mRNA from alignment at tig00000844_pilon:25913..27634-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1418.t1 ID=Ggra1418.t1|Name=Ggra1418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1722bp|location=Sequence derived from alignment at tig00000844_pilon:25913..27634- (Gracilaria gracilis GNS1m male)
ATGGTTCCTCCGCCCGTCAACAAGTTCCGCACCTCCATCGAGCGTGCGGT
ACGCGCCTTCAGCTTTCACAGAGCGTCCACCGACTCGTCTCCCCCCCAAC
CTTCCCAACAACCTTCCGTCGCTCCCTCCACTCCGCCCTACTCCCCGCAA
CCCAACGTACAACCCACTCGTTCCTTCCCCAATCTCTCCCGCATCCGCCA
TTCCTCACAGTACTCGCAGCGTCCACCACGCCCTCATCGCCCGCTCAAAT
TCGTGCCCCGTCGCAATACCCATTCATCGCGCTCGTCGCTCTCGCTGCGA
AACTTCTCTCTCAGTCACATTTCCGCCACACAAAGTGCGTCGCCCTCCAC
ATCCGAGTCTTCCGATTCGCCGCACTCCACATCGCCACCAACAAATGCCA
ATGCGTCGCTCCCCAAGCCCCACGTGTTCCGTCGCCTCAGCGCGCATCGC
ATGAGGAGTCTTTCGCTGGGTCATCGCGCGTCAGACGACGCGCAAGACCT
GGACAACAAGCCGTGGAGCAGCGGAGGACCCGCTCTTTTCTCGCGATCTC
CCACCGAAGATAGCGTCAGTTGGAGTCGTATCTTCGCCTCTTCGTTCGAC
CTCAGAGACAAAACTCGCTGGAGAAAGAGGAACTATTCGTACTCGTGCTC
CGACTTTGAAATTGAAGAGGAGCACCATATCGTGGAGATTGGCCAGCGTC
TGCCGGACAGGTGCCATTCCGGCACGGAAGAGGACGTGTTTGGGAGACGT
CGTCGTGACTTTTCCATCGCTTCGTTCTCGTTACCTGCTGTGTCGGCGTC
GCGCCTTCTTGCATGTGATACCAATCACTCTCCGTTGCCGCCGCCACCAC
AACCGCGTGCAGACGACGTCAGTACCAGACCGTCATCCATCAAACATTCG
TCCAAGTCCAGTGCGGAGCGTCGGGTCAAAGAGAAGCAGAAGCACCTATT
GGACACGCCCATGACCAAACCAGATCGTAACAGCAAGTCGGCTCTGATCA
AAGAAGCCACCAACGACGACTTTGATGAACAAGAAGCCATTCGCCACATC
ACAAAAGCCATCGACTCTTCCAAAGGGCGTCTTCGAAAAAGCGCAAACAT
GAGCAAAGCATTCACGTCGGTGATCAAGAGTGGCGACGGTTTCCTCAGAA
AGAGTGAACTGATTCAACAGACTCTCAACAGCGAGGATAGTAAGGACCCT
TCCATGATCATCCTGCTGGACCCCGAGTCATGTGAGCCCAGCCCGATACG
CGTGGAGGGTGCTAGTAGCGCTTCTGAGGAAAGTGCGTCGGTGGAGAATA
TGAAAAGTGTGCACGTGGTGCCTCCGCCAAACATCGGCTTCAGTACAAGT
ATGACTGCGCGCCAATGCGCGGCCACACTGGAGACGATCCTGAGAGATAT
GGCGTGTAAGGTGTCTCGCTATGCCGAAGAGGAGCATGGCAAGAACAGTA
TTGTGAAGCTGAAAGCGTCTCGATTCTCAGGTGGGGCTCGTCTGTTGGAT
AGAAAGGTGAAAGTTTTGGTGACGGTTAGGGAGGAGGACCATATTCGAAC
GTCGGTGTCATTCAGAAGAGTGGCTACGATGTACGGGAACAAGGATGCTC
ATTTCCCGATGTGTTGCGAGATTAGGGAACGGTTTCAACGAGAGTGGCCG
GCGGTTGTTGAAGCTCTATATATTCGTGTTGAAAGCAATCAGGTGCTGTC
GACGAGAAGTGCGGAGGGTTAG

Coding sequence (CDS) from alignment at tig00000844_pilon:25913..27634-

>Ggra1418.t1 ID=Ggra1418.t1|Name=Ggra1418.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1722bp|location=Sequence derived from alignment at tig00000844_pilon:25913..27634- (Gracilaria gracilis GNS1m male)
ATGGTTCCTCCGCCCGTCAACAAGTTCCGCACCTCCATCGAGCGTGCGGT
ACGCGCCTTCAGCTTTCACAGAGCGTCCACCGACTCGTCTCCCCCCCAAC
CTTCCCAACAACCTTCCGTCGCTCCCTCCACTCCGCCCTACTCCCCGCAA
CCCAACGTACAACCCACTCGTTCCTTCCCCAATCTCTCCCGCATCCGCCA
TTCCTCACAGTACTCGCAGCGTCCACCACGCCCTCATCGCCCGCTCAAAT
TCGTGCCCCGTCGCAATACCCATTCATCGCGCTCGTCGCTCTCGCTGCGA
AACTTCTCTCTCAGTCACATTTCCGCCACACAAAGTGCGTCGCCCTCCAC
ATCCGAGTCTTCCGATTCGCCGCACTCCACATCGCCACCAACAAATGCCA
ATGCGTCGCTCCCCAAGCCCCACGTGTTCCGTCGCCTCAGCGCGCATCGC
ATGAGGAGTCTTTCGCTGGGTCATCGCGCGTCAGACGACGCGCAAGACCT
GGACAACAAGCCGTGGAGCAGCGGAGGACCCGCTCTTTTCTCGCGATCTC
CCACCGAAGATAGCGTCAGTTGGAGTCGTATCTTCGCCTCTTCGTTCGAC
CTCAGAGACAAAACTCGCTGGAGAAAGAGGAACTATTCGTACTCGTGCTC
CGACTTTGAAATTGAAGAGGAGCACCATATCGTGGAGATTGGCCAGCGTC
TGCCGGACAGGTGCCATTCCGGCACGGAAGAGGACGTGTTTGGGAGACGT
CGTCGTGACTTTTCCATCGCTTCGTTCTCGTTACCTGCTGTGTCGGCGTC
GCGCCTTCTTGCATGTGATACCAATCACTCTCCGTTGCCGCCGCCACCAC
AACCGCGTGCAGACGACGTCAGTACCAGACCGTCATCCATCAAACATTCG
TCCAAGTCCAGTGCGGAGCGTCGGGTCAAAGAGAAGCAGAAGCACCTATT
GGACACGCCCATGACCAAACCAGATCGTAACAGCAAGTCGGCTCTGATCA
AAGAAGCCACCAACGACGACTTTGATGAACAAGAAGCCATTCGCCACATC
ACAAAAGCCATCGACTCTTCCAAAGGGCGTCTTCGAAAAAGCGCAAACAT
GAGCAAAGCATTCACGTCGGTGATCAAGAGTGGCGACGGTTTCCTCAGAA
AGAGTGAACTGATTCAACAGACTCTCAACAGCGAGGATAGTAAGGACCCT
TCCATGATCATCCTGCTGGACCCCGAGTCATGTGAGCCCAGCCCGATACG
CGTGGAGGGTGCTAGTAGCGCTTCTGAGGAAAGTGCGTCGGTGGAGAATA
TGAAAAGTGTGCACGTGGTGCCTCCGCCAAACATCGGCTTCAGTACAAGT
ATGACTGCGCGCCAATGCGCGGCCACACTGGAGACGATCCTGAGAGATAT
GGCGTGTAAGGTGTCTCGCTATGCCGAAGAGGAGCATGGCAAGAACAGTA
TTGTGAAGCTGAAAGCGTCTCGATTCTCAGGTGGGGCTCGTCTGTTGGAT
AGAAAGGTGAAAGTTTTGGTGACGGTTAGGGAGGAGGACCATATTCGAAC
GTCGGTGTCATTCAGAAGAGTGGCTACGATGTACGGGAACAAGGATGCTC
ATTTCCCGATGTGTTGCGAGATTAGGGAACGGTTTCAACGAGAGTGGCCG
GCGGTTGTTGAAGCTCTATATATTCGTGTTGAAAGCAATCAGGTGCTGTC
GACGAGAAGTGCGGAGGGTTAG