Ggra1417.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1417.t1
Unique NameGgra1417.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:23821..24789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO44982
PFAMsSulfotransfer_2
Max annot lvl33208|Metazoa
KEGG rclassRC00007,RC00231
KEGG koko:K01017
KEGG ReactionR02180
KEGG Pathwayko00532,map00532
Evalue9.86e-31
EggNOG OGsKOG4651@1|root,KOG4651@2759|Eukaryota,39NS8@33154|Opisthokonta,3BPSA@33208|Metazoa
EC2.8.2.5
Descriptionpolysaccharide localization
COG categoryG
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1417Ggra1417Gracilaria gracilis GNS1m malegenetig00000844_pilon 23821..24789 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1417.t1.stop1Ggra1417.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 23821..23823 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1417.t1.CDS1Ggra1417.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 23821..24789 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1417.t1.exon1Ggra1417.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 23821..24789 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1417.t1.start1Ggra1417.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 24787..24789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1417.t1Ggra1417.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 23821..24789 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1417.t1 ID=Ggra1417.t1|Name=Ggra1417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=323bp
MASGTASHARRMRGRPRRSSARRRATGAIGATAVAAALALLLVLLLIVWR
ALNAPVPPSLPRAWALRRALPLNRTDATAEHIVASAFARRVIVSESSKLI
FCPVPKAANSNWKYLIRKFEHLSDYADLTKAHNANLSGLRYLSDYSPSEL
HHLIHDASYFKFVFVRNPYTRLVSCYMDKFRNTDPVYVHNEYRLFLAQLF
HWHYARTVDIQNDPRPSFSTFVDELLKQPPRFMNAHWMPQTLHCGIGVMP
YDFVGRMENLQHDAQYVLHKLGKSDQHFPTQQQIGFPPSGASSQLADQLY
TPELRFKVRAIYATDFRILPYD*
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spliced messenger RNA

>Ggra1417.t1 ID=Ggra1417.t1|Name=Ggra1417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000844_pilon:23821..24789- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGGGCACCGCGTCGCACGCGCGCCGCATGCGTGGCCGCCCTCG
CCGGTCGTCGGCGCGTCGTCGCGCCACTGGCGCGATTGGCGCCACTGCCG
TGGCGGCTGCGCTTGCGCTGCTGCTCGTGCTGCTGCTCATTGTATGGCGC
GCACTGAACGCGCCTGTGCCGCCGTCGTTGCCGCGCGCATGGGCGCTTCG
TCGCGCGCTGCCGCTCAATCGCACGGATGCTACGGCTGAGCACATTGTGG
CCTCCGCTTTTGCGCGTCGCGTCATTGTCAGTGAGAGTAGCAAGCTCATT
TTCTGCCCGGTTCCCAAGGCGGCCAATAGCAATTGGAAGTACCTTATTCG
CAAGTTTGAACACTTGTCCGATTATGCGGACCTTACCAAGGCGCATAATG
CAAACCTGTCTGGCTTGCGATATCTCTCCGATTATTCGCCGTCCGAGCTG
CATCATTTGATCCATGATGCATCCTATTTCAAGTTTGTGTTTGTCAGAAA
TCCTTACACTCGTCTTGTCTCATGCTACATGGATAAGTTTCGCAACACTG
ATCCTGTTTACGTTCACAATGAATACCGTCTATTTCTTGCACAATTGTTT
CATTGGCACTACGCCAGAACCGTCGATATCCAAAATGATCCTCGTCCTTC
ATTCTCAACCTTTGTTGATGAGTTGCTCAAGCAACCTCCTCGTTTCATGA
ACGCTCACTGGATGCCGCAGACCCTTCATTGTGGCATTGGTGTCATGCCT
TATGACTTTGTAGGACGCATGGAGAACTTACAACATGACGCTCAATATGT
GCTTCACAAGCTCGGCAAGTCTGATCAACACTTTCCAACCCAGCAGCAAA
TCGGCTTCCCTCCATCTGGCGCTTCGTCCCAACTTGCCGACCAGCTTTAT
ACACCCGAACTACGCTTCAAGGTCCGTGCCATTTATGCCACTGATTTCCG
TATCCTCCCATATGATTAA
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protein sequence of Ggra1417.t1

>Ggra1417.t1 ID=Ggra1417.t1|Name=Ggra1417.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=323bp
MASGTASHARRMRGRPRRSSARRRATGAIGATAVAAALALLLVLLLIVWR
ALNAPVPPSLPRAWALRRALPLNRTDATAEHIVASAFARRVIVSESSKLI
FCPVPKAANSNWKYLIRKFEHLSDYADLTKAHNANLSGLRYLSDYSPSEL
HHLIHDASYFKFVFVRNPYTRLVSCYMDKFRNTDPVYVHNEYRLFLAQLF
HWHYARTVDIQNDPRPSFSTFVDELLKQPPRFMNAHWMPQTLHCGIGVMP
YDFVGRMENLQHDAQYVLHKLGKSDQHFPTQQQIGFPPSGASSQLADQLY
TPELRFKVRAIYATDFRILPYD*
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mRNA from alignment at tig00000844_pilon:23821..24789-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1417.t1 ID=Ggra1417.t1|Name=Ggra1417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000844_pilon:23821..24789- (Gracilaria gracilis GNS1m male)
ATGGCGTCGGGCACCGCGTCGCACGCGCGCCGCATGCGTGGCCGCCCTCG
CCGGTCGTCGGCGCGTCGTCGCGCCACTGGCGCGATTGGCGCCACTGCCG
TGGCGGCTGCGCTTGCGCTGCTGCTCGTGCTGCTGCTCATTGTATGGCGC
GCACTGAACGCGCCTGTGCCGCCGTCGTTGCCGCGCGCATGGGCGCTTCG
TCGCGCGCTGCCGCTCAATCGCACGGATGCTACGGCTGAGCACATTGTGG
CCTCCGCTTTTGCGCGTCGCGTCATTGTCAGTGAGAGTAGCAAGCTCATT
TTCTGCCCGGTTCCCAAGGCGGCCAATAGCAATTGGAAGTACCTTATTCG
CAAGTTTGAACACTTGTCCGATTATGCGGACCTTACCAAGGCGCATAATG
CAAACCTGTCTGGCTTGCGATATCTCTCCGATTATTCGCCGTCCGAGCTG
CATCATTTGATCCATGATGCATCCTATTTCAAGTTTGTGTTTGTCAGAAA
TCCTTACACTCGTCTTGTCTCATGCTACATGGATAAGTTTCGCAACACTG
ATCCTGTTTACGTTCACAATGAATACCGTCTATTTCTTGCACAATTGTTT
CATTGGCACTACGCCAGAACCGTCGATATCCAAAATGATCCTCGTCCTTC
ATTCTCAACCTTTGTTGATGAGTTGCTCAAGCAACCTCCTCGTTTCATGA
ACGCTCACTGGATGCCGCAGACCCTTCATTGTGGCATTGGTGTCATGCCT
TATGACTTTGTAGGACGCATGGAGAACTTACAACATGACGCTCAATATGT
GCTTCACAAGCTCGGCAAGTCTGATCAACACTTTCCAACCCAGCAGCAAA
TCGGCTTCCCTCCATCTGGCGCTTCGTCCCAACTTGCCGACCAGCTTTAT
ACACCCGAACTACGCTTCAAGGTCCGTGCCATTTATGCCACTGATTTCCG
TATCCTCCCATATGATTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:23821..24789-

>Ggra1417.t1 ID=Ggra1417.t1|Name=Ggra1417.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=969bp|location=Sequence derived from alignment at tig00000844_pilon:23821..24789- (Gracilaria gracilis GNS1m male)
ATGGCGTCGGGCACCGCGTCGCACGCGCGCCGCATGCGTGGCCGCCCTCG
CCGGTCGTCGGCGCGTCGTCGCGCCACTGGCGCGATTGGCGCCACTGCCG
TGGCGGCTGCGCTTGCGCTGCTGCTCGTGCTGCTGCTCATTGTATGGCGC
GCACTGAACGCGCCTGTGCCGCCGTCGTTGCCGCGCGCATGGGCGCTTCG
TCGCGCGCTGCCGCTCAATCGCACGGATGCTACGGCTGAGCACATTGTGG
CCTCCGCTTTTGCGCGTCGCGTCATTGTCAGTGAGAGTAGCAAGCTCATT
TTCTGCCCGGTTCCCAAGGCGGCCAATAGCAATTGGAAGTACCTTATTCG
CAAGTTTGAACACTTGTCCGATTATGCGGACCTTACCAAGGCGCATAATG
CAAACCTGTCTGGCTTGCGATATCTCTCCGATTATTCGCCGTCCGAGCTG
CATCATTTGATCCATGATGCATCCTATTTCAAGTTTGTGTTTGTCAGAAA
TCCTTACACTCGTCTTGTCTCATGCTACATGGATAAGTTTCGCAACACTG
ATCCTGTTTACGTTCACAATGAATACCGTCTATTTCTTGCACAATTGTTT
CATTGGCACTACGCCAGAACCGTCGATATCCAAAATGATCCTCGTCCTTC
ATTCTCAACCTTTGTTGATGAGTTGCTCAAGCAACCTCCTCGTTTCATGA
ACGCTCACTGGATGCCGCAGACCCTTCATTGTGGCATTGGTGTCATGCCT
TATGACTTTGTAGGACGCATGGAGAACTTACAACATGACGCTCAATATGT
GCTTCACAAGCTCGGCAAGTCTGATCAACACTTTCCAACCCAGCAGCAAA
TCGGCTTCCCTCCATCTGGCGCTTCGTCCCAACTTGCCGACCAGCTTTAT
ACACCCGAACTACGCTTCAAGGTCCGTGCCATTTATGCCACTGATTTCCG
TATCCTCCCATATGATTAA
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