Ggra1415.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1415.t2
Unique Name	Ggra1415.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	684

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:16979..19030 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	126957.SMAR012671-PA
Preferred name	ACTR8
PFAMs	Actin
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11673
GOs	GO:0000228,GO:0000785,GO:0000790,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015630,GO:0016043,GO:0016070,GO:0016579,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0031011,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033202,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097346,GO:0097659,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1903506,GO:1904949,GO:2000112,GO:2001141
Evalue	4.05e-17
EggNOG OGs	COG5277@1\|root,KOG0797@2759\|Eukaryota,38E28@33154\|Opisthokonta,3BD6J@33208\|Metazoa,3CVQ1@33213\|Bilateria,41X7G@6656\|Arthropoda
Description	Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize
COG category	L
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1415	Ggra1415	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 16979..19030 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1415.t2.start1	Ggra1415.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 16979..16981 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1415.t2.CDS1	Ggra1415.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 16979..19030 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1415.t2.exon1	Ggra1415.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 16979..19030 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1415.t2.stop1	Ggra1415.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 19028..19030 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1415.t2	Ggra1415.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 16979..19030 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:16979..19030+
coding sequence from alignment at tig00000844_pilon:16979..19030+

mRNA sequence

>Ggra1415.t2 ID=Ggra1415.t2|Name=Ggra1415.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp
MDAEEEDRPVSLNETGALSVKDENGVLPVPDVKDDEGAQSHENPQLRCQH
LKLRPGTRLKKPEPKDVVVIAFGSSAIRYGFASDSTPRIVFPAVAFLRSD
ESIADPTSEPFRIPVHHSRSDEELKAARVVFDEVREAVAKELALSERRRG
GGRPVPWKAAIEVVPGMSDAAKPAKLKEENVPVLVGHDVELLLRDEDRAK
SYDIVMPIWDGKLLFDCGAPASLIRKSLDVLISHIVSQLISDRRNPRRKG
SKFRTKPASANGNSKETKPITEPDSLFVDDGYAKSFVALVVPETAQRRDV
AELVDAVFSSKAMQTAAIFIHQSAVSCAFGAGLATCAVVDIGHSATTVAC
VEDGVICGESRIHLEYGSWHIQNAFEVLLRDYSSLQEVIEKTGAENGTQR
IPADVAEDLSVIIAKTTEQLGGFNVDENDNMNVAVVKAPSGISLRVKLGV
GIRTLPCYGLIYPKLLKAANEMTTPSKHITLRTTFERNSEDDSFVSDIFN
DLRRSGIATAALPVGLFANETGQPAAFTLNPKEASIVDAIIWSVARAVEI
KRPDQQSRTADTYRRYLNAVVLAGGGASIDGIALALEGRIKKGFLDAGVT
IHDVSVIDGGKGKTDEELAAAAAILKDVDSEGGLIDDTDTATLPWKGGAV
MVEADAIGEYWVYRDDWRARNVRALRERAPFYW*

spliced messenger RNA

>Ggra1415.t2 ID=Ggra1415.t2|Name=Ggra1415.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2052bp|location=Sequence derived from alignment at tig00000844_pilon:16979..19030+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCGGAAGAGGAAGACAGACCTGTTTCGTTGAACGAAACTGGGGC
GTTATCAGTGAAAGACGAAAATGGCGTTCTTCCAGTTCCGGATGTAAAGG
ATGATGAAGGTGCTCAAAGTCATGAGAACCCTCAGTTACGTTGCCAACAC
CTCAAGCTGCGACCAGGCACTCGTTTGAAGAAGCCAGAGCCAAAGGATGT
CGTTGTTATTGCATTTGGATCTTCCGCTATTCGATACGGATTTGCCTCAG
ATTCGACTCCAAGAATTGTATTTCCGGCTGTTGCTTTTTTGCGAAGTGAT
GAATCCATTGCAGATCCTACAAGTGAACCATTTCGTATTCCAGTCCACCA
TTCCCGGTCCGATGAAGAACTGAAAGCGGCTCGGGTGGTTTTTGACGAGG
TCCGCGAAGCAGTCGCCAAAGAGCTCGCACTGAGCGAAAGACGTCGAGGA
GGTGGTCGGCCAGTTCCTTGGAAGGCTGCAATTGAGGTTGTACCCGGAAT
GTCAGACGCAGCAAAACCTGCAAAACTGAAGGAAGAAAATGTTCCCGTAT
TAGTCGGTCACGATGTCGAACTATTGCTTCGTGATGAAGACAGAGCCAAG
AGCTACGATATAGTTATGCCGATTTGGGACGGAAAACTTTTGTTCGATTG
TGGAGCTCCTGCAAGTTTGATACGAAAATCTTTAGATGTTCTCATCTCTC
ACATAGTCTCCCAGTTAATTTCCGACAGAAGAAACCCAAGGAGAAAGGGG
TCGAAGTTTCGGACTAAGCCAGCAAGTGCAAACGGAAACTCGAAAGAAAC
AAAACCAATCACTGAGCCCGACTCTCTTTTCGTTGATGATGGATATGCGA
AGTCGTTTGTCGCCCTTGTAGTCCCAGAAACAGCACAGCGTAGAGATGTG
GCCGAACTTGTTGACGCGGTTTTCTCCTCCAAGGCCATGCAAACGGCGGC
AATTTTCATCCACCAAAGTGCCGTCTCATGTGCTTTCGGAGCGGGATTGG
CCACCTGCGCTGTTGTCGATATAGGACATTCCGCGACAACAGTGGCTTGT
GTTGAAGATGGAGTTATATGCGGGGAATCCCGAATTCATCTTGAATATGG
ATCATGGCATATTCAGAATGCTTTTGAAGTTTTGCTTCGAGATTACTCAT
CCTTGCAAGAAGTTATTGAGAAAACAGGTGCTGAGAACGGAACTCAGAGG
ATTCCTGCAGATGTTGCAGAAGACTTATCTGTAATTATAGCTAAAACTAC
GGAGCAACTTGGGGGCTTTAATGTCGATGAGAATGATAACATGAATGTTG
CCGTCGTGAAGGCACCCAGTGGCATATCTCTACGAGTAAAACTAGGGGTG
GGTATCCGCACGCTTCCTTGCTATGGACTGATATACCCAAAACTACTGAA
GGCGGCAAACGAAATGACGACACCATCAAAGCATATCACTCTTCGAACTA
CATTTGAACGCAATTCGGAGGATGACAGTTTTGTCAGCGACATATTCAAT
GACTTAAGAAGATCAGGGATTGCTACAGCGGCCCTTCCTGTAGGGCTTTT
TGCCAACGAAACTGGACAGCCGGCTGCATTTACTCTCAACCCAAAGGAAG
CCTCCATCGTTGACGCCATAATTTGGTCTGTTGCCCGCGCTGTAGAAATC
AAGAGGCCAGATCAACAATCTAGGACTGCAGATACTTATAGAAGGTATTT
GAACGCCGTCGTACTCGCGGGAGGTGGTGCTTCCATCGATGGCATAGCGC
TAGCCTTGGAAGGGCGAATTAAGAAAGGCTTTCTGGATGCCGGTGTAACC
ATACATGACGTTTCAGTTATCGATGGTGGAAAAGGAAAAACTGATGAAGA
GCTTGCTGCAGCCGCTGCAATTCTGAAGGATGTCGACTCGGAAGGGGGTC
TTATCGATGACACGGACACAGCTACCCTACCGTGGAAGGGAGGTGCAGTA
ATGGTCGAAGCGGATGCCATCGGAGAGTACTGGGTCTATAGAGATGACTG
GAGAGCAAGAAACGTGCGCGCGCTGCGAGAACGTGCTCCTTTTTACTGGT
AG

protein sequence of Ggra1415.t2

>Ggra1415.t2 ID=Ggra1415.t2|Name=Ggra1415.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=684bp
MDAEEEDRPVSLNETGALSVKDENGVLPVPDVKDDEGAQSHENPQLRCQH
LKLRPGTRLKKPEPKDVVVIAFGSSAIRYGFASDSTPRIVFPAVAFLRSD
ESIADPTSEPFRIPVHHSRSDEELKAARVVFDEVREAVAKELALSERRRG
GGRPVPWKAAIEVVPGMSDAAKPAKLKEENVPVLVGHDVELLLRDEDRAK
SYDIVMPIWDGKLLFDCGAPASLIRKSLDVLISHIVSQLISDRRNPRRKG
SKFRTKPASANGNSKETKPITEPDSLFVDDGYAKSFVALVVPETAQRRDV
AELVDAVFSSKAMQTAAIFIHQSAVSCAFGAGLATCAVVDIGHSATTVAC
VEDGVICGESRIHLEYGSWHIQNAFEVLLRDYSSLQEVIEKTGAENGTQR
IPADVAEDLSVIIAKTTEQLGGFNVDENDNMNVAVVKAPSGISLRVKLGV
GIRTLPCYGLIYPKLLKAANEMTTPSKHITLRTTFERNSEDDSFVSDIFN
DLRRSGIATAALPVGLFANETGQPAAFTLNPKEASIVDAIIWSVARAVEI
KRPDQQSRTADTYRRYLNAVVLAGGGASIDGIALALEGRIKKGFLDAGVT
IHDVSVIDGGKGKTDEELAAAAAILKDVDSEGGLIDDTDTATLPWKGGAV
MVEADAIGEYWVYRDDWRARNVRALRERAPFYW*

mRNA from alignment at tig00000844_pilon:16979..19030+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1415.t2 ID=Ggra1415.t2|Name=Ggra1415.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2052bp|location=Sequence derived from alignment at tig00000844_pilon:16979..19030+ (Gracilaria gracilis GNS1m male)
ATGGATGCGGAAGAGGAAGACAGACCTGTTTCGTTGAACGAAACTGGGGC
GTTATCAGTGAAAGACGAAAATGGCGTTCTTCCAGTTCCGGATGTAAAGG
ATGATGAAGGTGCTCAAAGTCATGAGAACCCTCAGTTACGTTGCCAACAC
CTCAAGCTGCGACCAGGCACTCGTTTGAAGAAGCCAGAGCCAAAGGATGT
CGTTGTTATTGCATTTGGATCTTCCGCTATTCGATACGGATTTGCCTCAG
ATTCGACTCCAAGAATTGTATTTCCGGCTGTTGCTTTTTTGCGAAGTGAT
GAATCCATTGCAGATCCTACAAGTGAACCATTTCGTATTCCAGTCCACCA
TTCCCGGTCCGATGAAGAACTGAAAGCGGCTCGGGTGGTTTTTGACGAGG
TCCGCGAAGCAGTCGCCAAAGAGCTCGCACTGAGCGAAAGACGTCGAGGA
GGTGGTCGGCCAGTTCCTTGGAAGGCTGCAATTGAGGTTGTACCCGGAAT
GTCAGACGCAGCAAAACCTGCAAAACTGAAGGAAGAAAATGTTCCCGTAT
TAGTCGGTCACGATGTCGAACTATTGCTTCGTGATGAAGACAGAGCCAAG
AGCTACGATATAGTTATGCCGATTTGGGACGGAAAACTTTTGTTCGATTG
TGGAGCTCCTGCAAGTTTGATACGAAAATCTTTAGATGTTCTCATCTCTC
ACATAGTCTCCCAGTTAATTTCCGACAGAAGAAACCCAAGGAGAAAGGGG
TCGAAGTTTCGGACTAAGCCAGCAAGTGCAAACGGAAACTCGAAAGAAAC
AAAACCAATCACTGAGCCCGACTCTCTTTTCGTTGATGATGGATATGCGA
AGTCGTTTGTCGCCCTTGTAGTCCCAGAAACAGCACAGCGTAGAGATGTG
GCCGAACTTGTTGACGCGGTTTTCTCCTCCAAGGCCATGCAAACGGCGGC
AATTTTCATCCACCAAAGTGCCGTCTCATGTGCTTTCGGAGCGGGATTGG
CCACCTGCGCTGTTGTCGATATAGGACATTCCGCGACAACAGTGGCTTGT
GTTGAAGATGGAGTTATATGCGGGGAATCCCGAATTCATCTTGAATATGG
ATCATGGCATATTCAGAATGCTTTTGAAGTTTTGCTTCGAGATTACTCAT
CCTTGCAAGAAGTTATTGAGAAAACAGGTGCTGAGAACGGAACTCAGAGG
ATTCCTGCAGATGTTGCAGAAGACTTATCTGTAATTATAGCTAAAACTAC
GGAGCAACTTGGGGGCTTTAATGTCGATGAGAATGATAACATGAATGTTG
CCGTCGTGAAGGCACCCAGTGGCATATCTCTACGAGTAAAACTAGGGGTG
GGTATCCGCACGCTTCCTTGCTATGGACTGATATACCCAAAACTACTGAA
GGCGGCAAACGAAATGACGACACCATCAAAGCATATCACTCTTCGAACTA
CATTTGAACGCAATTCGGAGGATGACAGTTTTGTCAGCGACATATTCAAT
GACTTAAGAAGATCAGGGATTGCTACAGCGGCCCTTCCTGTAGGGCTTTT
TGCCAACGAAACTGGACAGCCGGCTGCATTTACTCTCAACCCAAAGGAAG
CCTCCATCGTTGACGCCATAATTTGGTCTGTTGCCCGCGCTGTAGAAATC
AAGAGGCCAGATCAACAATCTAGGACTGCAGATACTTATAGAAGGTATTT
GAACGCCGTCGTACTCGCGGGAGGTGGTGCTTCCATCGATGGCATAGCGC
TAGCCTTGGAAGGGCGAATTAAGAAAGGCTTTCTGGATGCCGGTGTAACC
ATACATGACGTTTCAGTTATCGATGGTGGAAAAGGAAAAACTGATGAAGA
GCTTGCTGCAGCCGCTGCAATTCTGAAGGATGTCGACTCGGAAGGGGGTC
TTATCGATGACACGGACACAGCTACCCTACCGTGGAAGGGAGGTGCAGTA
ATGGTCGAAGCGGATGCCATCGGAGAGTACTGGGTCTATAGAGATGACTG
GAGAGCAAGAAACGTGCGCGCGCTGCGAGAACGTGCTCCTTTTTACTGGT
AG

Coding sequence (CDS) from alignment at tig00000844_pilon:16979..19030+

>Ggra1415.t2 ID=Ggra1415.t2|Name=Ggra1415.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2052bp|location=Sequence derived from alignment at tig00000844_pilon:16979..19030+ (Gracilaria gracilis GNS1m male)
ATGGATGCGGAAGAGGAAGACAGACCTGTTTCGTTGAACGAAACTGGGGC
GTTATCAGTGAAAGACGAAAATGGCGTTCTTCCAGTTCCGGATGTAAAGG
ATGATGAAGGTGCTCAAAGTCATGAGAACCCTCAGTTACGTTGCCAACAC
CTCAAGCTGCGACCAGGCACTCGTTTGAAGAAGCCAGAGCCAAAGGATGT
CGTTGTTATTGCATTTGGATCTTCCGCTATTCGATACGGATTTGCCTCAG
ATTCGACTCCAAGAATTGTATTTCCGGCTGTTGCTTTTTTGCGAAGTGAT
GAATCCATTGCAGATCCTACAAGTGAACCATTTCGTATTCCAGTCCACCA
TTCCCGGTCCGATGAAGAACTGAAAGCGGCTCGGGTGGTTTTTGACGAGG
TCCGCGAAGCAGTCGCCAAAGAGCTCGCACTGAGCGAAAGACGTCGAGGA
GGTGGTCGGCCAGTTCCTTGGAAGGCTGCAATTGAGGTTGTACCCGGAAT
GTCAGACGCAGCAAAACCTGCAAAACTGAAGGAAGAAAATGTTCCCGTAT
TAGTCGGTCACGATGTCGAACTATTGCTTCGTGATGAAGACAGAGCCAAG
AGCTACGATATAGTTATGCCGATTTGGGACGGAAAACTTTTGTTCGATTG
TGGAGCTCCTGCAAGTTTGATACGAAAATCTTTAGATGTTCTCATCTCTC
ACATAGTCTCCCAGTTAATTTCCGACAGAAGAAACCCAAGGAGAAAGGGG
TCGAAGTTTCGGACTAAGCCAGCAAGTGCAAACGGAAACTCGAAAGAAAC
AAAACCAATCACTGAGCCCGACTCTCTTTTCGTTGATGATGGATATGCGA
AGTCGTTTGTCGCCCTTGTAGTCCCAGAAACAGCACAGCGTAGAGATGTG
GCCGAACTTGTTGACGCGGTTTTCTCCTCCAAGGCCATGCAAACGGCGGC
AATTTTCATCCACCAAAGTGCCGTCTCATGTGCTTTCGGAGCGGGATTGG
CCACCTGCGCTGTTGTCGATATAGGACATTCCGCGACAACAGTGGCTTGT
GTTGAAGATGGAGTTATATGCGGGGAATCCCGAATTCATCTTGAATATGG
ATCATGGCATATTCAGAATGCTTTTGAAGTTTTGCTTCGAGATTACTCAT
CCTTGCAAGAAGTTATTGAGAAAACAGGTGCTGAGAACGGAACTCAGAGG
ATTCCTGCAGATGTTGCAGAAGACTTATCTGTAATTATAGCTAAAACTAC
GGAGCAACTTGGGGGCTTTAATGTCGATGAGAATGATAACATGAATGTTG
CCGTCGTGAAGGCACCCAGTGGCATATCTCTACGAGTAAAACTAGGGGTG
GGTATCCGCACGCTTCCTTGCTATGGACTGATATACCCAAAACTACTGAA
GGCGGCAAACGAAATGACGACACCATCAAAGCATATCACTCTTCGAACTA
CATTTGAACGCAATTCGGAGGATGACAGTTTTGTCAGCGACATATTCAAT
GACTTAAGAAGATCAGGGATTGCTACAGCGGCCCTTCCTGTAGGGCTTTT
TGCCAACGAAACTGGACAGCCGGCTGCATTTACTCTCAACCCAAAGGAAG
CCTCCATCGTTGACGCCATAATTTGGTCTGTTGCCCGCGCTGTAGAAATC
AAGAGGCCAGATCAACAATCTAGGACTGCAGATACTTATAGAAGGTATTT
GAACGCCGTCGTACTCGCGGGAGGTGGTGCTTCCATCGATGGCATAGCGC
TAGCCTTGGAAGGGCGAATTAAGAAAGGCTTTCTGGATGCCGGTGTAACC
ATACATGACGTTTCAGTTATCGATGGTGGAAAAGGAAAAACTGATGAAGA
GCTTGCTGCAGCCGCTGCAATTCTGAAGGATGTCGACTCGGAAGGGGGTC
TTATCGATGACACGGACACAGCTACCCTACCGTGGAAGGGAGGTGCAGTA
ATGGTCGAAGCGGATGCCATCGGAGAGTACTGGGTCTATAGAGATGACTG
GAGAGCAAGAAACGTGCGCGCGCTGCGAGAACGTGCTCCTTTTTACTGGT
AG