Ggra1413.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1413.t1
Unique NameGgra1413.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:12688..13929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog164328.Phyra81763
PFAMsPkinase,SnoaL_2
Max annot lvl4776|Peronosporales
Evalue9.88e-55
EggNOG OGsKOG0660@1|root,KOG0660@2759|Eukaryota,3QE79@4776|Peronosporales
DescriptionProtein kinase C conserved region 2 (CalB)
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1413Ggra1413Gracilaria gracilis GNS1m malegenetig00000844_pilon 12688..13929 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1413.t1.start1Ggra1413.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 12688..12690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1413.t1.CDS1Ggra1413.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 12688..13929 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1413.t1.exon1Ggra1413.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 12688..13929 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1413.t1.stop1Ggra1413.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 13927..13929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1413.t1Ggra1413.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 12688..13929 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1413.t1 ID=Ggra1413.t1|Name=Ggra1413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp
MNHLFAKLANRKKARDHGRDVADNEPEEAYEMVKRRAVVNLAILERPLMT
RDEFIVDVRYRNMQLIGSGSYGLVVKAIDTTQNSRVAIKKILRAFSSTRM
ARHVLREVRLLRHLHHPNIVRLLDIDVPGQYSAWDSVYIVTPLLKTDLKT
AFKEGQVEDNLTQKRIAYQLLSALEHMHSLGLMHRDIKSRNVLLDEHMNV
QLCDLGESRFYSKANRDILFEDLPGLQNERELTGAITTMIQSAPELSLGA
EYDAEVDIWAAGCVIAELIRPRHNYLFDSTAKHSHLQEIVNVVGFPTPDI
MELLPDYGRWYLKRMQKSSGNRIAELLGPDVDPLAVDLVEKMLLFSPKRR
ISAKDALRHSWFDEVRTERFSERETYDFCQSEPPGRASKSTLKQLVWEEV
VAFHPEAAKLGIR*
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spliced messenger RNA

>Ggra1413.t1 ID=Ggra1413.t1|Name=Ggra1413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000844_pilon:12688..13929+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCACCTGTTCGCTAAACTTGCTAACAGGAAGAAAGCTCGCGATCA
TGGGCGCGATGTTGCCGACAATGAGCCGGAAGAAGCGTATGAAATGGTAA
AACGCCGAGCCGTCGTCAACCTGGCAATACTTGAGCGACCACTTATGACC
AGAGATGAGTTTATCGTTGACGTTCGGTATCGCAATATGCAGTTAATCGG
CTCTGGCTCTTATGGGCTCGTGGTTAAAGCCATTGACACAACTCAGAATT
CTAGAGTTGCTATTAAGAAGATTCTCAGGGCCTTTTCATCAACCCGAATG
GCTAGACATGTTCTTCGAGAAGTTCGTTTGTTGAGACATCTTCACCATCC
CAATATCGTCCGTTTGCTTGATATTGATGTTCCAGGCCAGTATTCTGCTT
GGGATTCCGTGTACATTGTCACTCCTCTTCTTAAGACAGATTTAAAAACG
GCTTTCAAAGAAGGTCAAGTGGAAGATAATCTAACCCAGAAAAGAATTGC
GTATCAGTTGCTGTCGGCTCTGGAACACATGCATTCCTTGGGCTTGATGC
ATCGAGACATCAAATCAAGAAACGTTTTGCTTGATGAGCACATGAATGTA
CAACTATGCGATCTCGGTGAGTCTCGTTTTTACAGCAAAGCAAATCGAGA
TATTCTGTTTGAAGACTTGCCCGGCCTTCAGAATGAGAGGGAACTCACTG
GTGCTATAACCACTATGATCCAGAGTGCACCAGAACTTAGTTTAGGTGCT
GAGTACGATGCAGAGGTAGATATTTGGGCTGCTGGATGTGTAATCGCAGA
GCTGATTCGTCCTAGGCATAACTACCTTTTTGATTCCACTGCTAAGCACT
CACACTTACAAGAGATTGTGAACGTTGTAGGTTTCCCAACTCCCGATATT
ATGGAACTGCTTCCTGACTACGGGCGTTGGTATCTGAAGCGGATGCAGAA
ATCGAGTGGTAATCGAATTGCAGAACTTTTGGGACCCGATGTTGATCCCC
TAGCTGTGGATCTGGTGGAGAAGATGCTGTTGTTTTCGCCTAAGCGACGC
ATTTCAGCAAAAGACGCATTGAGGCACTCATGGTTTGATGAGGTGAGAAC
AGAAAGATTTTCCGAGCGTGAAACATATGACTTCTGCCAATCAGAGCCAC
CTGGAAGAGCTTCGAAGTCCACGTTAAAACAACTCGTTTGGGAGGAAGTT
GTCGCGTTCCACCCCGAGGCTGCTAAACTGGGCATCCGGTGA
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protein sequence of Ggra1413.t1

>Ggra1413.t1 ID=Ggra1413.t1|Name=Ggra1413.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MNHLFAKLANRKKARDHGRDVADNEPEEAYEMVKRRAVVNLAILERPLMT
RDEFIVDVRYRNMQLIGSGSYGLVVKAIDTTQNSRVAIKKILRAFSSTRM
ARHVLREVRLLRHLHHPNIVRLLDIDVPGQYSAWDSVYIVTPLLKTDLKT
AFKEGQVEDNLTQKRIAYQLLSALEHMHSLGLMHRDIKSRNVLLDEHMNV
QLCDLGESRFYSKANRDILFEDLPGLQNERELTGAITTMIQSAPELSLGA
EYDAEVDIWAAGCVIAELIRPRHNYLFDSTAKHSHLQEIVNVVGFPTPDI
MELLPDYGRWYLKRMQKSSGNRIAELLGPDVDPLAVDLVEKMLLFSPKRR
ISAKDALRHSWFDEVRTERFSERETYDFCQSEPPGRASKSTLKQLVWEEV
VAFHPEAAKLGIR*
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mRNA from alignment at tig00000844_pilon:12688..13929+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1413.t1 ID=Ggra1413.t1|Name=Ggra1413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000844_pilon:12688..13929+ (Gracilaria gracilis GNS1m male)
ATGAATCACCTGTTCGCTAAACTTGCTAACAGGAAGAAAGCTCGCGATCA
TGGGCGCGATGTTGCCGACAATGAGCCGGAAGAAGCGTATGAAATGGTAA
AACGCCGAGCCGTCGTCAACCTGGCAATACTTGAGCGACCACTTATGACC
AGAGATGAGTTTATCGTTGACGTTCGGTATCGCAATATGCAGTTAATCGG
CTCTGGCTCTTATGGGCTCGTGGTTAAAGCCATTGACACAACTCAGAATT
CTAGAGTTGCTATTAAGAAGATTCTCAGGGCCTTTTCATCAACCCGAATG
GCTAGACATGTTCTTCGAGAAGTTCGTTTGTTGAGACATCTTCACCATCC
CAATATCGTCCGTTTGCTTGATATTGATGTTCCAGGCCAGTATTCTGCTT
GGGATTCCGTGTACATTGTCACTCCTCTTCTTAAGACAGATTTAAAAACG
GCTTTCAAAGAAGGTCAAGTGGAAGATAATCTAACCCAGAAAAGAATTGC
GTATCAGTTGCTGTCGGCTCTGGAACACATGCATTCCTTGGGCTTGATGC
ATCGAGACATCAAATCAAGAAACGTTTTGCTTGATGAGCACATGAATGTA
CAACTATGCGATCTCGGTGAGTCTCGTTTTTACAGCAAAGCAAATCGAGA
TATTCTGTTTGAAGACTTGCCCGGCCTTCAGAATGAGAGGGAACTCACTG
GTGCTATAACCACTATGATCCAGAGTGCACCAGAACTTAGTTTAGGTGCT
GAGTACGATGCAGAGGTAGATATTTGGGCTGCTGGATGTGTAATCGCAGA
GCTGATTCGTCCTAGGCATAACTACCTTTTTGATTCCACTGCTAAGCACT
CACACTTACAAGAGATTGTGAACGTTGTAGGTTTCCCAACTCCCGATATT
ATGGAACTGCTTCCTGACTACGGGCGTTGGTATCTGAAGCGGATGCAGAA
ATCGAGTGGTAATCGAATTGCAGAACTTTTGGGACCCGATGTTGATCCCC
TAGCTGTGGATCTGGTGGAGAAGATGCTGTTGTTTTCGCCTAAGCGACGC
ATTTCAGCAAAAGACGCATTGAGGCACTCATGGTTTGATGAGGTGAGAAC
AGAAAGATTTTCCGAGCGTGAAACATATGACTTCTGCCAATCAGAGCCAC
CTGGAAGAGCTTCGAAGTCCACGTTAAAACAACTCGTTTGGGAGGAAGTT
GTCGCGTTCCACCCCGAGGCTGCTAAACTGGGCATCCGGTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:12688..13929+

>Ggra1413.t1 ID=Ggra1413.t1|Name=Ggra1413.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000844_pilon:12688..13929+ (Gracilaria gracilis GNS1m male)
ATGAATCACCTGTTCGCTAAACTTGCTAACAGGAAGAAAGCTCGCGATCA
TGGGCGCGATGTTGCCGACAATGAGCCGGAAGAAGCGTATGAAATGGTAA
AACGCCGAGCCGTCGTCAACCTGGCAATACTTGAGCGACCACTTATGACC
AGAGATGAGTTTATCGTTGACGTTCGGTATCGCAATATGCAGTTAATCGG
CTCTGGCTCTTATGGGCTCGTGGTTAAAGCCATTGACACAACTCAGAATT
CTAGAGTTGCTATTAAGAAGATTCTCAGGGCCTTTTCATCAACCCGAATG
GCTAGACATGTTCTTCGAGAAGTTCGTTTGTTGAGACATCTTCACCATCC
CAATATCGTCCGTTTGCTTGATATTGATGTTCCAGGCCAGTATTCTGCTT
GGGATTCCGTGTACATTGTCACTCCTCTTCTTAAGACAGATTTAAAAACG
GCTTTCAAAGAAGGTCAAGTGGAAGATAATCTAACCCAGAAAAGAATTGC
GTATCAGTTGCTGTCGGCTCTGGAACACATGCATTCCTTGGGCTTGATGC
ATCGAGACATCAAATCAAGAAACGTTTTGCTTGATGAGCACATGAATGTA
CAACTATGCGATCTCGGTGAGTCTCGTTTTTACAGCAAAGCAAATCGAGA
TATTCTGTTTGAAGACTTGCCCGGCCTTCAGAATGAGAGGGAACTCACTG
GTGCTATAACCACTATGATCCAGAGTGCACCAGAACTTAGTTTAGGTGCT
GAGTACGATGCAGAGGTAGATATTTGGGCTGCTGGATGTGTAATCGCAGA
GCTGATTCGTCCTAGGCATAACTACCTTTTTGATTCCACTGCTAAGCACT
CACACTTACAAGAGATTGTGAACGTTGTAGGTTTCCCAACTCCCGATATT
ATGGAACTGCTTCCTGACTACGGGCGTTGGTATCTGAAGCGGATGCAGAA
ATCGAGTGGTAATCGAATTGCAGAACTTTTGGGACCCGATGTTGATCCCC
TAGCTGTGGATCTGGTGGAGAAGATGCTGTTGTTTTCGCCTAAGCGACGC
ATTTCAGCAAAAGACGCATTGAGGCACTCATGGTTTGATGAGGTGAGAAC
AGAAAGATTTTCCGAGCGTGAAACATATGACTTCTGCCAATCAGAGCCAC
CTGGAAGAGCTTCGAAGTCCACGTTAAAACAACTCGTTTGGGAGGAAGTT
GTCGCGTTCCACCCCGAGGCTGCTAAACTGGGCATCCGGTGA
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