Ggra1407.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1407.t1
Unique Name	Ggra1407.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	468

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000169_pilon	contig	tig00000169_pilon:215831..217234 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1407	Ggra1407	Gracilaria gracilis GNS1m male	gene	tig00000169_pilon 215831..217234 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1407.t1.start1	Ggra1407.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000169_pilon 215831..215833 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1407.t1.CDS1	Ggra1407.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000169_pilon 215831..217234 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1407.t1.exon1	Ggra1407.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000169_pilon 215831..217234 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1407.t1.stop1	Ggra1407.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000169_pilon 217232..217234 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1407.t1	Ggra1407.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000169_pilon 215831..217234 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000169_pilon:215831..217234+
coding sequence from alignment at tig00000169_pilon:215831..217234+

mRNA sequence

>Ggra1407.t1 ID=Ggra1407.t1|Name=Ggra1407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp
MFSLHLLRFLLLCCTLLCLGSVLDAKPVSLTLPHTSRFICPTTFRSCGGL
AFCSSSTTTSTSCPARRISEDDSFFQGELRDKGGDIAYFLPMDPDVTPRN
DVQATGVSFCYTYGALPNALRGGDGYKPMGPPGWDALPVGKKSRAHLWFK
DFGGNAAYYLNSVTMWLSANQESNNAIECLLKSAFKDFDLDITARIYVTH
HVRYRLSSSQKMPNRMILTADVEYPTKAGPYVKEPWLFVRLDNKDGAKAV
KLFDRSSQIKANSGKPTAAGSCISVSPRRFVKTLSFFPGMTSDRSWSSYG
WTVNRPSGAPQIVFEDGEVYFYGKNQAYDNRNVRLTSKESFPRGDGLAFR
FLLRVPRCDTTEMKLHLPGGPILRLTSGGRTANWNTYSGGFNRLAESGIF
VGEWWHDIHVVYKRNSIILFENGVKKFTLNGATDSSIPFDLLFINYDSRS
NAMLKVMNVAVHTNLND*

spliced messenger RNA

>Ggra1407.t1 ID=Ggra1407.t1|Name=Ggra1407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000169_pilon:215831..217234+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCACTTCATCTTCTTCGTTTTTTGCTTCTTTGTTGCACCCTGCT
CTGCCTGGGATCCGTATTGGACGCCAAACCCGTTTCGCTCACCCTACCGC
ACACCTCTCGATTCATTTGCCCGACCACCTTTCGCTCCTGCGGCGGCCTC
GCCTTCTGTTCCAGCAGCACTACCACTTCTACTTCGTGCCCGGCTCGCCG
CATCTCTGAAGATGACAGCTTCTTTCAAGGCGAACTGCGCGATAAGGGAG
GTGATATTGCGTACTTTCTACCGATGGACCCGGACGTCACCCCGCGGAAC
GACGTGCAAGCTACCGGTGTTTCCTTCTGTTACACATACGGCGCTCTGCC
CAACGCCTTGAGAGGCGGAGATGGATACAAGCCGATGGGTCCTCCAGGAT
GGGATGCACTCCCGGTTGGCAAGAAATCTCGGGCGCATTTATGGTTCAAA
GATTTCGGTGGCAACGCTGCGTACTATCTTAACTCCGTCACTATGTGGCT
ATCTGCGAACCAGGAAAGCAATAACGCAATCGAATGCCTACTCAAGTCGG
CGTTCAAGGACTTCGACCTCGATATTACCGCCCGTATCTACGTGACGCAC
CACGTCCGCTACAGGCTATCATCCAGCCAAAAGATGCCAAACAGGATGAT
TTTGACCGCCGACGTGGAGTATCCAACCAAAGCCGGCCCGTACGTCAAGG
AGCCCTGGCTATTTGTGCGCCTTGATAACAAGGACGGCGCCAAGGCTGTG
AAACTCTTCGATCGCTCCAGTCAAATCAAGGCGAACTCCGGAAAACCAAC
TGCCGCCGGGTCGTGCATCTCGGTCTCGCCGCGCAGATTCGTGAAAACTC
TTAGCTTCTTCCCGGGCATGACGAGCGATCGGTCGTGGTCTTCGTATGGC
TGGACAGTTAATCGTCCGAGCGGTGCCCCGCAAATTGTGTTTGAAGACGG
CGAAGTTTATTTCTACGGAAAAAACCAGGCATACGACAACAGGAATGTGC
GATTGACATCAAAAGAGTCGTTTCCGAGAGGAGATGGGTTGGCCTTCCGC
TTCCTTTTGCGCGTGCCCAGGTGTGATACGACCGAGATGAAGCTACACTT
GCCGGGCGGTCCTATTCTGCGTCTCACAAGTGGTGGGCGCACTGCGAATT
GGAACACGTATAGCGGAGGCTTTAACAGACTGGCGGAAAGCGGTATTTTT
GTCGGAGAATGGTGGCATGACATCCATGTTGTTTACAAGCGTAATAGCAT
AATTTTGTTTGAGAACGGTGTGAAGAAGTTTACGCTCAATGGGGCAACTG
ATTCTTCGATTCCCTTTGATCTTCTTTTCATTAATTATGATAGTAGAAGC
AACGCGATGCTGAAGGTCATGAACGTTGCTGTTCACACGAATCTCAACGA
TTAA

protein sequence of Ggra1407.t1

>Ggra1407.t1 ID=Ggra1407.t1|Name=Ggra1407.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=468bp
MFSLHLLRFLLLCCTLLCLGSVLDAKPVSLTLPHTSRFICPTTFRSCGGL
AFCSSSTTTSTSCPARRISEDDSFFQGELRDKGGDIAYFLPMDPDVTPRN
DVQATGVSFCYTYGALPNALRGGDGYKPMGPPGWDALPVGKKSRAHLWFK
DFGGNAAYYLNSVTMWLSANQESNNAIECLLKSAFKDFDLDITARIYVTH
HVRYRLSSSQKMPNRMILTADVEYPTKAGPYVKEPWLFVRLDNKDGAKAV
KLFDRSSQIKANSGKPTAAGSCISVSPRRFVKTLSFFPGMTSDRSWSSYG
WTVNRPSGAPQIVFEDGEVYFYGKNQAYDNRNVRLTSKESFPRGDGLAFR
FLLRVPRCDTTEMKLHLPGGPILRLTSGGRTANWNTYSGGFNRLAESGIF
VGEWWHDIHVVYKRNSIILFENGVKKFTLNGATDSSIPFDLLFINYDSRS
NAMLKVMNVAVHTNLND*

mRNA from alignment at tig00000169_pilon:215831..217234+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1407.t1 ID=Ggra1407.t1|Name=Ggra1407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000169_pilon:215831..217234+ (Gracilaria gracilis GNS1m male)
ATGTTCTCACTTCATCTTCTTCGTTTTTTGCTTCTTTGTTGCACCCTGCT
CTGCCTGGGATCCGTATTGGACGCCAAACCCGTTTCGCTCACCCTACCGC
ACACCTCTCGATTCATTTGCCCGACCACCTTTCGCTCCTGCGGCGGCCTC
GCCTTCTGTTCCAGCAGCACTACCACTTCTACTTCGTGCCCGGCTCGCCG
CATCTCTGAAGATGACAGCTTCTTTCAAGGCGAACTGCGCGATAAGGGAG
GTGATATTGCGTACTTTCTACCGATGGACCCGGACGTCACCCCGCGGAAC
GACGTGCAAGCTACCGGTGTTTCCTTCTGTTACACATACGGCGCTCTGCC
CAACGCCTTGAGAGGCGGAGATGGATACAAGCCGATGGGTCCTCCAGGAT
GGGATGCACTCCCGGTTGGCAAGAAATCTCGGGCGCATTTATGGTTCAAA
GATTTCGGTGGCAACGCTGCGTACTATCTTAACTCCGTCACTATGTGGCT
ATCTGCGAACCAGGAAAGCAATAACGCAATCGAATGCCTACTCAAGTCGG
CGTTCAAGGACTTCGACCTCGATATTACCGCCCGTATCTACGTGACGCAC
CACGTCCGCTACAGGCTATCATCCAGCCAAAAGATGCCAAACAGGATGAT
TTTGACCGCCGACGTGGAGTATCCAACCAAAGCCGGCCCGTACGTCAAGG
AGCCCTGGCTATTTGTGCGCCTTGATAACAAGGACGGCGCCAAGGCTGTG
AAACTCTTCGATCGCTCCAGTCAAATCAAGGCGAACTCCGGAAAACCAAC
TGCCGCCGGGTCGTGCATCTCGGTCTCGCCGCGCAGATTCGTGAAAACTC
TTAGCTTCTTCCCGGGCATGACGAGCGATCGGTCGTGGTCTTCGTATGGC
TGGACAGTTAATCGTCCGAGCGGTGCCCCGCAAATTGTGTTTGAAGACGG
CGAAGTTTATTTCTACGGAAAAAACCAGGCATACGACAACAGGAATGTGC
GATTGACATCAAAAGAGTCGTTTCCGAGAGGAGATGGGTTGGCCTTCCGC
TTCCTTTTGCGCGTGCCCAGGTGTGATACGACCGAGATGAAGCTACACTT
GCCGGGCGGTCCTATTCTGCGTCTCACAAGTGGTGGGCGCACTGCGAATT
GGAACACGTATAGCGGAGGCTTTAACAGACTGGCGGAAAGCGGTATTTTT
GTCGGAGAATGGTGGCATGACATCCATGTTGTTTACAAGCGTAATAGCAT
AATTTTGTTTGAGAACGGTGTGAAGAAGTTTACGCTCAATGGGGCAACTG
ATTCTTCGATTCCCTTTGATCTTCTTTTCATTAATTATGATAGTAGAAGC
AACGCGATGCTGAAGGTCATGAACGTTGCTGTTCACACGAATCTCAACGA
TTAA

Coding sequence (CDS) from alignment at tig00000169_pilon:215831..217234+

>Ggra1407.t1 ID=Ggra1407.t1|Name=Ggra1407.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1404bp|location=Sequence derived from alignment at tig00000169_pilon:215831..217234+ (Gracilaria gracilis GNS1m male)
ATGTTCTCACTTCATCTTCTTCGTTTTTTGCTTCTTTGTTGCACCCTGCT
CTGCCTGGGATCCGTATTGGACGCCAAACCCGTTTCGCTCACCCTACCGC
ACACCTCTCGATTCATTTGCCCGACCACCTTTCGCTCCTGCGGCGGCCTC
GCCTTCTGTTCCAGCAGCACTACCACTTCTACTTCGTGCCCGGCTCGCCG
CATCTCTGAAGATGACAGCTTCTTTCAAGGCGAACTGCGCGATAAGGGAG
GTGATATTGCGTACTTTCTACCGATGGACCCGGACGTCACCCCGCGGAAC
GACGTGCAAGCTACCGGTGTTTCCTTCTGTTACACATACGGCGCTCTGCC
CAACGCCTTGAGAGGCGGAGATGGATACAAGCCGATGGGTCCTCCAGGAT
GGGATGCACTCCCGGTTGGCAAGAAATCTCGGGCGCATTTATGGTTCAAA
GATTTCGGTGGCAACGCTGCGTACTATCTTAACTCCGTCACTATGTGGCT
ATCTGCGAACCAGGAAAGCAATAACGCAATCGAATGCCTACTCAAGTCGG
CGTTCAAGGACTTCGACCTCGATATTACCGCCCGTATCTACGTGACGCAC
CACGTCCGCTACAGGCTATCATCCAGCCAAAAGATGCCAAACAGGATGAT
TTTGACCGCCGACGTGGAGTATCCAACCAAAGCCGGCCCGTACGTCAAGG
AGCCCTGGCTATTTGTGCGCCTTGATAACAAGGACGGCGCCAAGGCTGTG
AAACTCTTCGATCGCTCCAGTCAAATCAAGGCGAACTCCGGAAAACCAAC
TGCCGCCGGGTCGTGCATCTCGGTCTCGCCGCGCAGATTCGTGAAAACTC
TTAGCTTCTTCCCGGGCATGACGAGCGATCGGTCGTGGTCTTCGTATGGC
TGGACAGTTAATCGTCCGAGCGGTGCCCCGCAAATTGTGTTTGAAGACGG
CGAAGTTTATTTCTACGGAAAAAACCAGGCATACGACAACAGGAATGTGC
GATTGACATCAAAAGAGTCGTTTCCGAGAGGAGATGGGTTGGCCTTCCGC
TTCCTTTTGCGCGTGCCCAGGTGTGATACGACCGAGATGAAGCTACACTT
GCCGGGCGGTCCTATTCTGCGTCTCACAAGTGGTGGGCGCACTGCGAATT
GGAACACGTATAGCGGAGGCTTTAACAGACTGGCGGAAAGCGGTATTTTT
GTCGGAGAATGGTGGCATGACATCCATGTTGTTTACAAGCGTAATAGCAT
AATTTTGTTTGAGAACGGTGTGAAGAAGTTTACGCTCAATGGGGCAACTG
ATTCTTCGATTCCCTTTGATCTTCTTTTCATTAATTATGATAGTAGAAGC
AACGCGATGCTGAAGGTCATGAACGTTGCTGTTCACACGAATCTCAACGA
TTAA