Ggra1405.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1405.t1
Unique NameGgra1405.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length453
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000169_piloncontigtig00000169_pilon:189203..190665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps21869
PFAMsCRM1_C
Max annot lvl2836|Bacillariophyta
Evalue4.08e-07
EggNOG OGsKOG4541@1|root,KOG4541@2759|Eukaryota,2XFMV@2836|Bacillariophyta
DescriptionCRM1 C terminal
COG categoryUY
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1405Ggra1405Gracilaria gracilis GNS1m malegenetig00000169_pilon 189203..190665 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1405.t1Ggra1405.t1Gracilaria gracilis GNS1m malepolypeptidetig00000169_pilon 189203..190665 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1405.t1.stop1Ggra1405.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000169_pilon 189203..189205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1405.t1.CDS1Ggra1405.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000169_pilon 189203..189353 -
Ggra1405.t1.CDS2Ggra1405.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000169_pilon 189458..190665 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1405.t1.exon1Ggra1405.t1.exon1Gracilaria gracilis GNS1m maleexontig00000169_pilon 189203..189353 -
Ggra1405.t1.exon2Ggra1405.t1.exon2Gracilaria gracilis GNS1m maleexontig00000169_pilon 189458..190665 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1405.t1.intron1Ggra1405.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000169_pilon 189354..189457 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1405.t1.start1Ggra1405.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000169_pilon 190663..190665 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1405.t1 ID=Ggra1405.t1|Name=Ggra1405.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=453bp
MASRLASALALLTLTLVLTLGVLTSLLRARAPTSTPRKPRTPRAFLRRWA
SAWSDYSALRDAPLGEPLAELVAALHAHQNPSNCARAHFLLFEYRSSLGF
GAQIRHLLVAFYAALQTRRVLLLSERHPFYWASGCETRAHNRRFTCHFRA
LSDSCPFAAVDALRRRGALRVVRANYSSVEHWARYNAYSGAPSVMILSQQ
QMGDRFPSFLHAFPKQRDFEAQLRWLLPRASHAELAPDAAARRLWLSAAA
FYVTRLNARSASHVRAAVARVLRGAHWPSPANLIGAPLRASDKCRGNRAH
RGPGEMDCVTLAEVGDTVMRLALMQPALTHVVLSSEDAAAVSDHKVRAAF
GAVAGRQPLRVLRFENDLSPGTGNTNRVLSKLRVKQARLLRSMLVVLHLQ
ALAELHVLTPRSTFHSLIAALANTTPGKRRHVTFPLGSWRDLNASVGSQL
LR*
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spliced messenger RNA

>Ggra1405.t1 ID=Ggra1405.t1|Name=Ggra1405.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1359bp|location=Sequence derived from alignment at tig00000169_pilon:189203..190665- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGCGCTTGGCCAGCGCCTTGGCGCTGCTCACGCTCACGCTGGT
GCTCACCTTAGGCGTGCTCACGTCGCTGCTGCGCGCGCGCGCCCCCACCT
CCACGCCGCGCAAGCCGCGCACGCCGCGCGCCTTCCTGCGGCGCTGGGCG
TCGGCATGGAGCGACTACTCGGCGCTGCGCGACGCACCGCTGGGCGAGCC
GCTGGCCGAGTTGGTGGCCGCGCTGCACGCGCACCAGAACCCGAGCAACT
GCGCGCGCGCGCACTTTCTGCTATTCGAGTACCGCTCGTCGCTGGGCTTT
GGCGCGCAGATCCGCCACCTGCTCGTCGCCTTCTACGCCGCGCTGCAGAC
GCGCCGCGTGCTGCTGCTCAGCGAGCGCCACCCGTTCTACTGGGCCAGCG
GTTGCGAGACGCGCGCGCACAACCGTCGCTTCACGTGCCACTTCCGCGCG
CTGTCCGACTCGTGCCCGTTCGCCGCCGTGGACGCGCTGCGCCGGCGCGG
CGCGCTGCGCGTCGTGCGCGCAAACTACAGCTCGGTGGAGCACTGGGCGC
GCTACAACGCGTACAGCGGCGCGCCCTCCGTCATGATACTCTCGCAGCAG
CAAATGGGCGATCGCTTCCCGAGCTTTCTGCACGCGTTTCCGAAACAGCG
CGACTTTGAGGCGCAGCTACGCTGGCTGCTGCCGCGCGCGTCGCACGCCG
AGCTGGCGCCGGACGCGGCGGCGCGCCGGCTGTGGCTGTCGGCCGCGGCG
TTCTACGTGACGCGCCTCAACGCGCGCAGCGCGAGCCACGTGCGCGCCGC
CGTGGCGCGCGTGCTGCGCGGCGCGCACTGGCCGTCGCCCGCGAACCTCA
TCGGCGCGCCGCTGCGCGCGTCCGACAAGTGCCGCGGCAACCGCGCGCAC
CGCGGCCCCGGCGAGATGGACTGCGTCACGCTGGCGGAGGTGGGCGACAC
CGTGATGCGCCTCGCCCTCATGCAGCCCGCGCTTACGCACGTCGTGCTCA
GCTCGGAGGACGCCGCCGCCGTGAGCGACCACAAGGTGCGCGCCGCCTTT
GGCGCCGTCGCGGGCCGCCAGCCGCTCCGCGTGCTGCGTTTTGAGAACGA
CTTGAGCCCGGGTACCGGCAATACCAACCGCGTGCTGTCCAAGCTGCGCG
TCAAGCAGGCGCGCCTGCTGCGCTCCATGCTGGTCGTGCTACATTTGCAG
GCACTGGCCGAGCTGCACGTGCTCACGCCGCGCTCCACGTTTCACTCGTT
GATTGCGGCGTTGGCCAACACCACGCCGGGCAAGCGCCGACATGTCACCT
TCCCGCTGGGCAGCTGGCGCGACCTCAACGCCAGCGTCGGCAGCCAGCTG
CTGCGGTAG
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protein sequence of Ggra1405.t1

>Ggra1405.t1 ID=Ggra1405.t1|Name=Ggra1405.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=453bp
MASRLASALALLTLTLVLTLGVLTSLLRARAPTSTPRKPRTPRAFLRRWA
SAWSDYSALRDAPLGEPLAELVAALHAHQNPSNCARAHFLLFEYRSSLGF
GAQIRHLLVAFYAALQTRRVLLLSERHPFYWASGCETRAHNRRFTCHFRA
LSDSCPFAAVDALRRRGALRVVRANYSSVEHWARYNAYSGAPSVMILSQQ
QMGDRFPSFLHAFPKQRDFEAQLRWLLPRASHAELAPDAAARRLWLSAAA
FYVTRLNARSASHVRAAVARVLRGAHWPSPANLIGAPLRASDKCRGNRAH
RGPGEMDCVTLAEVGDTVMRLALMQPALTHVVLSSEDAAAVSDHKVRAAF
GAVAGRQPLRVLRFENDLSPGTGNTNRVLSKLRVKQARLLRSMLVVLHLQ
ALAELHVLTPRSTFHSLIAALANTTPGKRRHVTFPLGSWRDLNASVGSQL
LR*
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mRNA from alignment at tig00000169_pilon:189203..190665-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1405.t1 ID=Ggra1405.t1|Name=Ggra1405.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1463bp|location=Sequence derived from alignment at tig00000169_pilon:189203..190665- (Gracilaria gracilis GNS1m male)
ATGGCGTCGCGCTTGGCCAGCGCCTTGGCGCTGCTCACGCTCACGCTGGT
GCTCACCTTAGGCGTGCTCACGTCGCTGCTGCGCGCGCGCGCCCCCACCT
CCACGCCGCGCAAGCCGCGCACGCCGCGCGCCTTCCTGCGGCGCTGGGCG
TCGGCATGGAGCGACTACTCGGCGCTGCGCGACGCACCGCTGGGCGAGCC
GCTGGCCGAGTTGGTGGCCGCGCTGCACGCGCACCAGAACCCGAGCAACT
GCGCGCGCGCGCACTTTCTGCTATTCGAGTACCGCTCGTCGCTGGGCTTT
GGCGCGCAGATCCGCCACCTGCTCGTCGCCTTCTACGCCGCGCTGCAGAC
GCGCCGCGTGCTGCTGCTCAGCGAGCGCCACCCGTTCTACTGGGCCAGCG
GTTGCGAGACGCGCGCGCACAACCGTCGCTTCACGTGCCACTTCCGCGCG
CTGTCCGACTCGTGCCCGTTCGCCGCCGTGGACGCGCTGCGCCGGCGCGG
CGCGCTGCGCGTCGTGCGCGCAAACTACAGCTCGGTGGAGCACTGGGCGC
GCTACAACGCGTACAGCGGCGCGCCCTCCGTCATGATACTCTCGCAGCAG
CAAATGGGCGATCGCTTCCCGAGCTTTCTGCACGCGTTTCCGAAACAGCG
CGACTTTGAGGCGCAGCTACGCTGGCTGCTGCCGCGCGCGTCGCACGCCG
AGCTGGCGCCGGACGCGGCGGCGCGCCGGCTGTGGCTGTCGGCCGCGGCG
TTCTACGTGACGCGCCTCAACGCGCGCAGCGCGAGCCACGTGCGCGCCGC
CGTGGCGCGCGTGCTGCGCGGCGCGCACTGGCCGTCGCCCGCGAACCTCA
TCGGCGCGCCGCTGCGCGCGTCCGACAAGTGCCGCGGCAACCGCGCGCAC
CGCGGCCCCGGCGAGATGGACTGCGTCACGCTGGCGGAGGTGGGCGACAC
CGTGATGCGCCTCGCCCTCATGCAGCCCGCGCTTACGCACGTCGTGCTCA
GCTCGGAGGACGCCGCCGCCGTGAGCGACCACAAGGTGCGCGCCGCCTTT
GGCGCCGTCGCGGGCCGCCAGCCGCTCCGCGTGCTGCGTTTTGAGAACGA
CTTGAGCCCGGGTACCGGCAATACCAACCGCGTGCTGTCCAAGCTGCGCG
TCAAGCAGGCGCGCCTGCTGCGCTCCATGCTGGTCGTGCTACATTTGCAG
GCACTGGCGTACGTATTGAAGCGCTCTTCTCCTGTTGTTGAAAGCCACGG
CGTACCACTGCTTTACTGACCATCGTTTGTGTTTCCCCCACTTGTTTGCG
GCGCCACCACAGCGAGCTGCACGTGCTCACGCCGCGCTCCACGTTTCACT
CGTTGATTGCGGCGTTGGCCAACACCACGCCGGGCAAGCGCCGACATGTC
ACCTTCCCGCTGGGCAGCTGGCGCGACCTCAACGCCAGCGTCGGCAGCCA
GCTGCTGCGGTAG
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Coding sequence (CDS) from alignment at tig00000169_pilon:189203..190665-

>Ggra1405.t1 ID=Ggra1405.t1|Name=Ggra1405.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1359bp|location=Sequence derived from alignment at tig00000169_pilon:189203..190665- (Gracilaria gracilis GNS1m male)
ATGGCGTCGCGCTTGGCCAGCGCCTTGGCGCTGCTCACGCTCACGCTGGT
GCTCACCTTAGGCGTGCTCACGTCGCTGCTGCGCGCGCGCGCCCCCACCT
CCACGCCGCGCAAGCCGCGCACGCCGCGCGCCTTCCTGCGGCGCTGGGCG
TCGGCATGGAGCGACTACTCGGCGCTGCGCGACGCACCGCTGGGCGAGCC
GCTGGCCGAGTTGGTGGCCGCGCTGCACGCGCACCAGAACCCGAGCAACT
GCGCGCGCGCGCACTTTCTGCTATTCGAGTACCGCTCGTCGCTGGGCTTT
GGCGCGCAGATCCGCCACCTGCTCGTCGCCTTCTACGCCGCGCTGCAGAC
GCGCCGCGTGCTGCTGCTCAGCGAGCGCCACCCGTTCTACTGGGCCAGCG
GTTGCGAGACGCGCGCGCACAACCGTCGCTTCACGTGCCACTTCCGCGCG
CTGTCCGACTCGTGCCCGTTCGCCGCCGTGGACGCGCTGCGCCGGCGCGG
CGCGCTGCGCGTCGTGCGCGCAAACTACAGCTCGGTGGAGCACTGGGCGC
GCTACAACGCGTACAGCGGCGCGCCCTCCGTCATGATACTCTCGCAGCAG
CAAATGGGCGATCGCTTCCCGAGCTTTCTGCACGCGTTTCCGAAACAGCG
CGACTTTGAGGCGCAGCTACGCTGGCTGCTGCCGCGCGCGTCGCACGCCG
AGCTGGCGCCGGACGCGGCGGCGCGCCGGCTGTGGCTGTCGGCCGCGGCG
TTCTACGTGACGCGCCTCAACGCGCGCAGCGCGAGCCACGTGCGCGCCGC
CGTGGCGCGCGTGCTGCGCGGCGCGCACTGGCCGTCGCCCGCGAACCTCA
TCGGCGCGCCGCTGCGCGCGTCCGACAAGTGCCGCGGCAACCGCGCGCAC
CGCGGCCCCGGCGAGATGGACTGCGTCACGCTGGCGGAGGTGGGCGACAC
CGTGATGCGCCTCGCCCTCATGCAGCCCGCGCTTACGCACGTCGTGCTCA
GCTCGGAGGACGCCGCCGCCGTGAGCGACCACAAGGTGCGCGCCGCCTTT
GGCGCCGTCGCGGGCCGCCAGCCGCTCCGCGTGCTGCGTTTTGAGAACGA
CTTGAGCCCGGGTACCGGCAATACCAACCGCGTGCTGTCCAAGCTGCGCG
TCAAGCAGGCGCGCCTGCTGCGCTCCATGCTGGTCGTGCTACATTTGCAG
GCACTGGCCGAGCTGCACGTGCTCACGCCGCGCTCCACGTTTCACTCGTT
GATTGCGGCGTTGGCCAACACCACGCCGGGCAAGCGCCGACATGTCACCT
TCCCGCTGGGCAGCTGGCGCGACCTCAACGCCAGCGTCGGCAGCCAGCTG
CTGCGGTAG
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