Ggra1404.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1404.t1
Unique NameGgra1404.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length451
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000169_piloncontigtig00000169_pilon:186523..187875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1404Ggra1404Gracilaria gracilis GNS1m malegenetig00000169_pilon 186523..187875 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1404.t1.stop1Ggra1404.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000169_pilon 186523..186525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1404.t1.CDS1Ggra1404.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000169_pilon 186523..187875 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1404.t1.exon1Ggra1404.t1.exon1Gracilaria gracilis GNS1m maleexontig00000169_pilon 186523..187875 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1404.t1.start1Ggra1404.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000169_pilon 187873..187875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1404.t1Ggra1404.t1Gracilaria gracilis GNS1m malepolypeptidetig00000169_pilon 186523..187875 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1404.t1 ID=Ggra1404.t1|Name=Ggra1404.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=451bp
MRPTAPITLCAFICLTALLLCISVTPLSTRARARFLSSLLPPSVAARAST
TLPFETFSVAQASANRPRDAQFARRLRAFLRIIVTQYADWHRHQRLLCDA
DGAHARSLRLLVLRSNGNAGVGDRMRSILYSYLAAVASDRLFLIDWQSPL
PLAAVLPSARAHNFTYDATLFTDAGRGGDDEEHVVYGPSDYEDLRVYLSS
RRVVVNQKYNKFSFHRFFSLYERYPELNLSRRIVQAGLQHFRITREEVAP
FILNALFQTSPSLRRSLRKLLPFGGQRYVSLHARLGHGVGEKSGRFNFEQ
RGVTLEDMSTCIGSLAATMARQRGCERVFVVTDTKRARPFLEAGIHAVLP
HADVAHSPINATHFFALHGPEYFPDESDRRHRFEEVFVDLGLLAMAESMV
FFESGYGVLAAWLGAITDSVMMEFDNCTQLQRGNVNATTLLPQRLLSDVF
*
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spliced messenger RNA

>Ggra1404.t1 ID=Ggra1404.t1|Name=Ggra1404.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000169_pilon:186523..187875- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCCAACCGCCCCCATCACCCTGTGCGCCTTCATCTGCCTCACCGC
GCTGCTGCTCTGCATCTCCGTCACGCCGCTCTCCACCCGCGCGCGCGCCC
GCTTCCTCAGCTCGCTGCTGCCGCCGTCCGTCGCCGCGCGCGCGTCCACT
ACGCTCCCCTTCGAGACATTCTCCGTCGCGCAGGCGTCCGCCAACCGACC
GCGCGACGCGCAGTTCGCGCGCCGTCTGCGCGCCTTTCTGCGCATCATCG
TCACGCAGTACGCCGACTGGCACCGCCACCAGCGGCTGCTGTGCGACGCC
GATGGCGCGCACGCGCGCTCGCTGCGCCTGCTCGTGCTGCGTTCCAACGG
CAACGCCGGCGTGGGCGACCGCATGCGATCCATCCTGTACAGCTACCTGG
CGGCCGTGGCGTCCGACCGCCTCTTCCTCATCGACTGGCAGAGCCCGCTG
CCGCTCGCCGCCGTGCTGCCCAGCGCGCGCGCGCACAACTTCACGTACGA
CGCCACGCTCTTCACGGACGCCGGCCGCGGCGGTGACGACGAGGAACACG
TCGTGTACGGGCCGTCGGACTATGAAGATCTGCGCGTGTATCTGTCGTCC
CGCCGCGTCGTCGTCAATCAAAAGTACAACAAGTTCAGCTTCCACCGCTT
CTTCTCGCTGTACGAGCGCTACCCCGAGCTCAACCTGTCGCGCCGCATAG
TGCAAGCCGGTCTGCAGCACTTTCGCATCACGCGCGAGGAGGTGGCGCCC
TTCATTCTCAACGCGCTGTTCCAGACGTCGCCTTCGCTACGCCGCTCGCT
TCGCAAACTACTCCCGTTCGGTGGCCAGCGCTACGTATCGCTGCACGCGC
GACTTGGGCACGGAGTGGGCGAAAAGTCCGGCCGCTTCAACTTTGAGCAG
CGCGGCGTCACTCTTGAAGACATGTCCACCTGCATCGGTTCGTTGGCTGC
AACCATGGCTCGGCAACGCGGATGCGAGCGCGTCTTCGTCGTCACGGACA
CCAAGAGAGCGCGCCCGTTTTTGGAGGCCGGAATTCACGCTGTGTTGCCG
CACGCCGACGTCGCTCATAGCCCGATTAATGCCACGCATTTCTTTGCGCT
GCACGGACCCGAGTACTTCCCCGACGAAAGCGACAGGCGGCACAGGTTTG
AGGAGGTGTTCGTGGACCTCGGTTTGTTGGCCATGGCGGAGTCAATGGTG
TTTTTCGAGTCGGGCTATGGCGTGCTTGCGGCCTGGCTCGGCGCAATCAC
GGACTCTGTCATGATGGAGTTCGATAATTGCACCCAACTGCAAAGAGGCA
ATGTAAACGCGACGACACTTTTACCGCAAAGGCTCTTGAGCGACGTGTTT
TGA
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protein sequence of Ggra1404.t1

>Ggra1404.t1 ID=Ggra1404.t1|Name=Ggra1404.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=451bp
MRPTAPITLCAFICLTALLLCISVTPLSTRARARFLSSLLPPSVAARAST
TLPFETFSVAQASANRPRDAQFARRLRAFLRIIVTQYADWHRHQRLLCDA
DGAHARSLRLLVLRSNGNAGVGDRMRSILYSYLAAVASDRLFLIDWQSPL
PLAAVLPSARAHNFTYDATLFTDAGRGGDDEEHVVYGPSDYEDLRVYLSS
RRVVVNQKYNKFSFHRFFSLYERYPELNLSRRIVQAGLQHFRITREEVAP
FILNALFQTSPSLRRSLRKLLPFGGQRYVSLHARLGHGVGEKSGRFNFEQ
RGVTLEDMSTCIGSLAATMARQRGCERVFVVTDTKRARPFLEAGIHAVLP
HADVAHSPINATHFFALHGPEYFPDESDRRHRFEEVFVDLGLLAMAESMV
FFESGYGVLAAWLGAITDSVMMEFDNCTQLQRGNVNATTLLPQRLLSDVF
*
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mRNA from alignment at tig00000169_pilon:186523..187875-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1404.t1 ID=Ggra1404.t1|Name=Ggra1404.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000169_pilon:186523..187875- (Gracilaria gracilis GNS1m male)
ATGCGTCCAACCGCCCCCATCACCCTGTGCGCCTTCATCTGCCTCACCGC
GCTGCTGCTCTGCATCTCCGTCACGCCGCTCTCCACCCGCGCGCGCGCCC
GCTTCCTCAGCTCGCTGCTGCCGCCGTCCGTCGCCGCGCGCGCGTCCACT
ACGCTCCCCTTCGAGACATTCTCCGTCGCGCAGGCGTCCGCCAACCGACC
GCGCGACGCGCAGTTCGCGCGCCGTCTGCGCGCCTTTCTGCGCATCATCG
TCACGCAGTACGCCGACTGGCACCGCCACCAGCGGCTGCTGTGCGACGCC
GATGGCGCGCACGCGCGCTCGCTGCGCCTGCTCGTGCTGCGTTCCAACGG
CAACGCCGGCGTGGGCGACCGCATGCGATCCATCCTGTACAGCTACCTGG
CGGCCGTGGCGTCCGACCGCCTCTTCCTCATCGACTGGCAGAGCCCGCTG
CCGCTCGCCGCCGTGCTGCCCAGCGCGCGCGCGCACAACTTCACGTACGA
CGCCACGCTCTTCACGGACGCCGGCCGCGGCGGTGACGACGAGGAACACG
TCGTGTACGGGCCGTCGGACTATGAAGATCTGCGCGTGTATCTGTCGTCC
CGCCGCGTCGTCGTCAATCAAAAGTACAACAAGTTCAGCTTCCACCGCTT
CTTCTCGCTGTACGAGCGCTACCCCGAGCTCAACCTGTCGCGCCGCATAG
TGCAAGCCGGTCTGCAGCACTTTCGCATCACGCGCGAGGAGGTGGCGCCC
TTCATTCTCAACGCGCTGTTCCAGACGTCGCCTTCGCTACGCCGCTCGCT
TCGCAAACTACTCCCGTTCGGTGGCCAGCGCTACGTATCGCTGCACGCGC
GACTTGGGCACGGAGTGGGCGAAAAGTCCGGCCGCTTCAACTTTGAGCAG
CGCGGCGTCACTCTTGAAGACATGTCCACCTGCATCGGTTCGTTGGCTGC
AACCATGGCTCGGCAACGCGGATGCGAGCGCGTCTTCGTCGTCACGGACA
CCAAGAGAGCGCGCCCGTTTTTGGAGGCCGGAATTCACGCTGTGTTGCCG
CACGCCGACGTCGCTCATAGCCCGATTAATGCCACGCATTTCTTTGCGCT
GCACGGACCCGAGTACTTCCCCGACGAAAGCGACAGGCGGCACAGGTTTG
AGGAGGTGTTCGTGGACCTCGGTTTGTTGGCCATGGCGGAGTCAATGGTG
TTTTTCGAGTCGGGCTATGGCGTGCTTGCGGCCTGGCTCGGCGCAATCAC
GGACTCTGTCATGATGGAGTTCGATAATTGCACCCAACTGCAAAGAGGCA
ATGTAAACGCGACGACACTTTTACCGCAAAGGCTCTTGAGCGACGTGTTT
TGA
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Coding sequence (CDS) from alignment at tig00000169_pilon:186523..187875-

>Ggra1404.t1 ID=Ggra1404.t1|Name=Ggra1404.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1353bp|location=Sequence derived from alignment at tig00000169_pilon:186523..187875- (Gracilaria gracilis GNS1m male)
ATGCGTCCAACCGCCCCCATCACCCTGTGCGCCTTCATCTGCCTCACCGC
GCTGCTGCTCTGCATCTCCGTCACGCCGCTCTCCACCCGCGCGCGCGCCC
GCTTCCTCAGCTCGCTGCTGCCGCCGTCCGTCGCCGCGCGCGCGTCCACT
ACGCTCCCCTTCGAGACATTCTCCGTCGCGCAGGCGTCCGCCAACCGACC
GCGCGACGCGCAGTTCGCGCGCCGTCTGCGCGCCTTTCTGCGCATCATCG
TCACGCAGTACGCCGACTGGCACCGCCACCAGCGGCTGCTGTGCGACGCC
GATGGCGCGCACGCGCGCTCGCTGCGCCTGCTCGTGCTGCGTTCCAACGG
CAACGCCGGCGTGGGCGACCGCATGCGATCCATCCTGTACAGCTACCTGG
CGGCCGTGGCGTCCGACCGCCTCTTCCTCATCGACTGGCAGAGCCCGCTG
CCGCTCGCCGCCGTGCTGCCCAGCGCGCGCGCGCACAACTTCACGTACGA
CGCCACGCTCTTCACGGACGCCGGCCGCGGCGGTGACGACGAGGAACACG
TCGTGTACGGGCCGTCGGACTATGAAGATCTGCGCGTGTATCTGTCGTCC
CGCCGCGTCGTCGTCAATCAAAAGTACAACAAGTTCAGCTTCCACCGCTT
CTTCTCGCTGTACGAGCGCTACCCCGAGCTCAACCTGTCGCGCCGCATAG
TGCAAGCCGGTCTGCAGCACTTTCGCATCACGCGCGAGGAGGTGGCGCCC
TTCATTCTCAACGCGCTGTTCCAGACGTCGCCTTCGCTACGCCGCTCGCT
TCGCAAACTACTCCCGTTCGGTGGCCAGCGCTACGTATCGCTGCACGCGC
GACTTGGGCACGGAGTGGGCGAAAAGTCCGGCCGCTTCAACTTTGAGCAG
CGCGGCGTCACTCTTGAAGACATGTCCACCTGCATCGGTTCGTTGGCTGC
AACCATGGCTCGGCAACGCGGATGCGAGCGCGTCTTCGTCGTCACGGACA
CCAAGAGAGCGCGCCCGTTTTTGGAGGCCGGAATTCACGCTGTGTTGCCG
CACGCCGACGTCGCTCATAGCCCGATTAATGCCACGCATTTCTTTGCGCT
GCACGGACCCGAGTACTTCCCCGACGAAAGCGACAGGCGGCACAGGTTTG
AGGAGGTGTTCGTGGACCTCGGTTTGTTGGCCATGGCGGAGTCAATGGTG
TTTTTCGAGTCGGGCTATGGCGTGCTTGCGGCCTGGCTCGGCGCAATCAC
GGACTCTGTCATGATGGAGTTCGATAATTGCACCCAACTGCAAAGAGGCA
ATGTAAACGCGACGACACTTTTACCGCAAAGGCTCTTGAGCGACGTGTTT
TGA
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