Ggra1403.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1403.t1
Unique Name	Ggra1403.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	573

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000169_pilon	contig	tig00000169_pilon:183282..185000 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	15368.BRADI1G29760.1
PFAMs	Glyco_transf_92
Max annot lvl	35493\|Streptophyta
Evalue	3.42e-15
EggNOG OGs	COG0463@1\|root,2QTF9@2759\|Eukaryota,37N9S@33090\|Viridiplantae,3GBHN@35493\|Streptophyta,3KVVU@4447\|Liliopsida,3I4Q3@38820\|Poales
Description	Glycosyltransferase family 92
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1403	Ggra1403	Gracilaria gracilis GNS1m male	gene	tig00000169_pilon 183282..185000 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1403.t1.start1	Ggra1403.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000169_pilon 183282..183284 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1403.t1.CDS1	Ggra1403.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000169_pilon 183282..185000 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1403.t1.exon1	Ggra1403.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000169_pilon 183282..185000 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1403.t1.stop1	Ggra1403.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000169_pilon 184998..185000 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1403.t1	Ggra1403.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000169_pilon 183282..185000 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000169_pilon:183282..185000+
coding sequence from alignment at tig00000169_pilon:183282..185000+

mRNA sequence

>Ggra1403.t1 ID=Ggra1403.t1|Name=Ggra1403.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=573bp
MNILDALLPYARDTKQPLSHPSSKSRPRPRLLSYLGDGVRKLFTARTVLL
IGAVILAAATLVPLSVFPQQFKAFRIAFEHSTQIWSLPPSIHSTFKLSRG
SPEGNRILERDWTRPHIFLHYARPHSADRGTIELFIFANGVTLGDFNRSI
NVVGCLVGQHVYPSEVVRGDVFACQVTQPIKKGSLISLVLLHSEDIRNQT
QRGVQLGEHVNASIEEQDIIPLPEDTVLHIGDEYGDESLMYVNSEQRYES
LGDDWDPGAEQSHPRYEVCLGTQIKPFTKYLDEWIAYYTRVGVDMVYVLD
NDAQEDLSKKYEGRDEVQVLYWPWRRSQVQGLTYITIAARPRCEWIMIAD
VDELPMLGMGHNNELAGKQVLRRYLRRRLSSEYKQFQFQFLVMGSSGHVK
TPPGPLPEVYVHKTRHHPRNGKSVARTDHWWRYTTLHMFGGIPTAQAPVD
RNSSKLYYPVDEDDQPITVHFHHRSYEDMIEKQRFGSACTDGKPGPNPDL
QLPSEIPGWVTKIDETLKYTYFRDIYRAIMRQPFELSQSLVRKFEGERCV
ARLHTTGERRGMIEEHLPCGAP*

spliced messenger RNA

>Ggra1403.t1 ID=Ggra1403.t1|Name=Ggra1403.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1719bp|location=Sequence derived from alignment at tig00000169_pilon:183282..185000+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATCCTAGACGCTCTTCTTCCCTATGCTCGTGATACCAAACAACC
TCTTTCTCACCCGTCGTCCAAGTCTAGGCCACGACCAAGGCTTTTGTCCT
ATCTAGGCGATGGCGTTAGGAAACTTTTCACCGCACGTACTGTTTTACTG
ATTGGCGCCGTCATACTCGCCGCCGCTACACTGGTACCGCTCTCCGTCTT
TCCGCAACAATTCAAAGCGTTTCGAATTGCATTTGAACACTCGACGCAGA
TCTGGTCATTGCCGCCCAGCATTCACAGCACCTTCAAGTTAAGTCGTGGC
AGCCCTGAGGGGAATCGCATTCTCGAACGAGACTGGACGCGTCCACATAT
CTTTTTGCACTACGCCCGACCCCACTCAGCCGATCGGGGAACTATCGAAC
TCTTCATATTTGCCAATGGCGTCACTCTGGGTGATTTCAATCGCAGTATA
AACGTGGTCGGTTGTCTTGTCGGCCAACATGTTTATCCATCCGAAGTAGT
TCGGGGAGATGTGTTCGCCTGTCAAGTTACACAACCCATCAAGAAAGGAA
GTCTTATATCTCTGGTTCTACTTCATAGCGAAGATATTCGCAACCAAACG
CAACGGGGTGTTCAACTCGGCGAGCATGTCAACGCCAGTATCGAAGAGCA
AGACATCATTCCACTGCCCGAGGACACAGTTCTGCACATAGGCGATGAAT
ATGGTGATGAGTCGTTAATGTATGTCAACTCTGAACAGCGGTATGAATCA
CTTGGGGATGACTGGGACCCGGGTGCAGAACAAAGTCACCCTCGTTACGA
GGTCTGCCTCGGAACCCAAATAAAACCCTTTACCAAGTACCTTGACGAGT
GGATAGCGTACTACACACGCGTCGGAGTGGATATGGTGTACGTTCTAGAC
AACGATGCGCAAGAAGACCTCTCCAAAAAATACGAGGGAAGGGACGAAGT
ACAGGTGTTGTATTGGCCTTGGCGTCGATCTCAAGTGCAAGGGCTCACCT
ACATAACCATTGCGGCACGACCACGCTGTGAATGGATTATGATAGCTGAT
GTAGATGAACTTCCGATGCTTGGTATGGGACACAACAATGAGCTCGCAGG
TAAACAGGTTCTGCGGAGATACTTGCGACGTCGTCTAAGCAGCGAATACA
AGCAGTTCCAGTTCCAATTCCTGGTAATGGGAAGCTCCGGACATGTGAAA
ACGCCACCAGGTCCTCTGCCAGAAGTGTATGTGCACAAAACTCGGCACCA
TCCGCGTAATGGCAAGTCCGTTGCTCGCACTGATCATTGGTGGAGATACA
CAACTCTGCATATGTTTGGTGGGATACCCACCGCACAAGCGCCAGTGGAT
AGGAATTCTTCCAAGCTGTACTACCCAGTTGATGAGGACGATCAACCGAT
CACCGTGCATTTCCATCACCGTTCGTATGAAGATATGATCGAGAAACAGA
GATTTGGTTCTGCGTGCACTGACGGGAAACCTGGACCCAATCCGGATCTC
CAACTTCCTTCAGAAATACCTGGTTGGGTGACGAAGATCGATGAAACGCT
GAAGTACACCTACTTTCGTGACATTTATCGTGCCATCATGAGGCAGCCTT
TCGAGTTAAGCCAGAGCTTGGTTAGAAAATTTGAGGGAGAAAGATGTGTG
GCTAGACTCCACACTACTGGTGAACGACGAGGCATGATAGAAGAGCATTT
ACCTTGTGGGGCTCCATAA

protein sequence of Ggra1403.t1

>Ggra1403.t1 ID=Ggra1403.t1|Name=Ggra1403.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=573bp
MNILDALLPYARDTKQPLSHPSSKSRPRPRLLSYLGDGVRKLFTARTVLL
IGAVILAAATLVPLSVFPQQFKAFRIAFEHSTQIWSLPPSIHSTFKLSRG
SPEGNRILERDWTRPHIFLHYARPHSADRGTIELFIFANGVTLGDFNRSI
NVVGCLVGQHVYPSEVVRGDVFACQVTQPIKKGSLISLVLLHSEDIRNQT
QRGVQLGEHVNASIEEQDIIPLPEDTVLHIGDEYGDESLMYVNSEQRYES
LGDDWDPGAEQSHPRYEVCLGTQIKPFTKYLDEWIAYYTRVGVDMVYVLD
NDAQEDLSKKYEGRDEVQVLYWPWRRSQVQGLTYITIAARPRCEWIMIAD
VDELPMLGMGHNNELAGKQVLRRYLRRRLSSEYKQFQFQFLVMGSSGHVK
TPPGPLPEVYVHKTRHHPRNGKSVARTDHWWRYTTLHMFGGIPTAQAPVD
RNSSKLYYPVDEDDQPITVHFHHRSYEDMIEKQRFGSACTDGKPGPNPDL
QLPSEIPGWVTKIDETLKYTYFRDIYRAIMRQPFELSQSLVRKFEGERCV
ARLHTTGERRGMIEEHLPCGAP*

mRNA from alignment at tig00000169_pilon:183282..185000+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1403.t1 ID=Ggra1403.t1|Name=Ggra1403.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1719bp|location=Sequence derived from alignment at tig00000169_pilon:183282..185000+ (Gracilaria gracilis GNS1m male)
ATGAACATCCTAGACGCTCTTCTTCCCTATGCTCGTGATACCAAACAACC
TCTTTCTCACCCGTCGTCCAAGTCTAGGCCACGACCAAGGCTTTTGTCCT
ATCTAGGCGATGGCGTTAGGAAACTTTTCACCGCACGTACTGTTTTACTG
ATTGGCGCCGTCATACTCGCCGCCGCTACACTGGTACCGCTCTCCGTCTT
TCCGCAACAATTCAAAGCGTTTCGAATTGCATTTGAACACTCGACGCAGA
TCTGGTCATTGCCGCCCAGCATTCACAGCACCTTCAAGTTAAGTCGTGGC
AGCCCTGAGGGGAATCGCATTCTCGAACGAGACTGGACGCGTCCACATAT
CTTTTTGCACTACGCCCGACCCCACTCAGCCGATCGGGGAACTATCGAAC
TCTTCATATTTGCCAATGGCGTCACTCTGGGTGATTTCAATCGCAGTATA
AACGTGGTCGGTTGTCTTGTCGGCCAACATGTTTATCCATCCGAAGTAGT
TCGGGGAGATGTGTTCGCCTGTCAAGTTACACAACCCATCAAGAAAGGAA
GTCTTATATCTCTGGTTCTACTTCATAGCGAAGATATTCGCAACCAAACG
CAACGGGGTGTTCAACTCGGCGAGCATGTCAACGCCAGTATCGAAGAGCA
AGACATCATTCCACTGCCCGAGGACACAGTTCTGCACATAGGCGATGAAT
ATGGTGATGAGTCGTTAATGTATGTCAACTCTGAACAGCGGTATGAATCA
CTTGGGGATGACTGGGACCCGGGTGCAGAACAAAGTCACCCTCGTTACGA
GGTCTGCCTCGGAACCCAAATAAAACCCTTTACCAAGTACCTTGACGAGT
GGATAGCGTACTACACACGCGTCGGAGTGGATATGGTGTACGTTCTAGAC
AACGATGCGCAAGAAGACCTCTCCAAAAAATACGAGGGAAGGGACGAAGT
ACAGGTGTTGTATTGGCCTTGGCGTCGATCTCAAGTGCAAGGGCTCACCT
ACATAACCATTGCGGCACGACCACGCTGTGAATGGATTATGATAGCTGAT
GTAGATGAACTTCCGATGCTTGGTATGGGACACAACAATGAGCTCGCAGG
TAAACAGGTTCTGCGGAGATACTTGCGACGTCGTCTAAGCAGCGAATACA
AGCAGTTCCAGTTCCAATTCCTGGTAATGGGAAGCTCCGGACATGTGAAA
ACGCCACCAGGTCCTCTGCCAGAAGTGTATGTGCACAAAACTCGGCACCA
TCCGCGTAATGGCAAGTCCGTTGCTCGCACTGATCATTGGTGGAGATACA
CAACTCTGCATATGTTTGGTGGGATACCCACCGCACAAGCGCCAGTGGAT
AGGAATTCTTCCAAGCTGTACTACCCAGTTGATGAGGACGATCAACCGAT
CACCGTGCATTTCCATCACCGTTCGTATGAAGATATGATCGAGAAACAGA
GATTTGGTTCTGCGTGCACTGACGGGAAACCTGGACCCAATCCGGATCTC
CAACTTCCTTCAGAAATACCTGGTTGGGTGACGAAGATCGATGAAACGCT
GAAGTACACCTACTTTCGTGACATTTATCGTGCCATCATGAGGCAGCCTT
TCGAGTTAAGCCAGAGCTTGGTTAGAAAATTTGAGGGAGAAAGATGTGTG
GCTAGACTCCACACTACTGGTGAACGACGAGGCATGATAGAAGAGCATTT
ACCTTGTGGGGCTCCATAA

Coding sequence (CDS) from alignment at tig00000169_pilon:183282..185000+

>Ggra1403.t1 ID=Ggra1403.t1|Name=Ggra1403.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1719bp|location=Sequence derived from alignment at tig00000169_pilon:183282..185000+ (Gracilaria gracilis GNS1m male)
ATGAACATCCTAGACGCTCTTCTTCCCTATGCTCGTGATACCAAACAACC
TCTTTCTCACCCGTCGTCCAAGTCTAGGCCACGACCAAGGCTTTTGTCCT
ATCTAGGCGATGGCGTTAGGAAACTTTTCACCGCACGTACTGTTTTACTG
ATTGGCGCCGTCATACTCGCCGCCGCTACACTGGTACCGCTCTCCGTCTT
TCCGCAACAATTCAAAGCGTTTCGAATTGCATTTGAACACTCGACGCAGA
TCTGGTCATTGCCGCCCAGCATTCACAGCACCTTCAAGTTAAGTCGTGGC
AGCCCTGAGGGGAATCGCATTCTCGAACGAGACTGGACGCGTCCACATAT
CTTTTTGCACTACGCCCGACCCCACTCAGCCGATCGGGGAACTATCGAAC
TCTTCATATTTGCCAATGGCGTCACTCTGGGTGATTTCAATCGCAGTATA
AACGTGGTCGGTTGTCTTGTCGGCCAACATGTTTATCCATCCGAAGTAGT
TCGGGGAGATGTGTTCGCCTGTCAAGTTACACAACCCATCAAGAAAGGAA
GTCTTATATCTCTGGTTCTACTTCATAGCGAAGATATTCGCAACCAAACG
CAACGGGGTGTTCAACTCGGCGAGCATGTCAACGCCAGTATCGAAGAGCA
AGACATCATTCCACTGCCCGAGGACACAGTTCTGCACATAGGCGATGAAT
ATGGTGATGAGTCGTTAATGTATGTCAACTCTGAACAGCGGTATGAATCA
CTTGGGGATGACTGGGACCCGGGTGCAGAACAAAGTCACCCTCGTTACGA
GGTCTGCCTCGGAACCCAAATAAAACCCTTTACCAAGTACCTTGACGAGT
GGATAGCGTACTACACACGCGTCGGAGTGGATATGGTGTACGTTCTAGAC
AACGATGCGCAAGAAGACCTCTCCAAAAAATACGAGGGAAGGGACGAAGT
ACAGGTGTTGTATTGGCCTTGGCGTCGATCTCAAGTGCAAGGGCTCACCT
ACATAACCATTGCGGCACGACCACGCTGTGAATGGATTATGATAGCTGAT
GTAGATGAACTTCCGATGCTTGGTATGGGACACAACAATGAGCTCGCAGG
TAAACAGGTTCTGCGGAGATACTTGCGACGTCGTCTAAGCAGCGAATACA
AGCAGTTCCAGTTCCAATTCCTGGTAATGGGAAGCTCCGGACATGTGAAA
ACGCCACCAGGTCCTCTGCCAGAAGTGTATGTGCACAAAACTCGGCACCA
TCCGCGTAATGGCAAGTCCGTTGCTCGCACTGATCATTGGTGGAGATACA
CAACTCTGCATATGTTTGGTGGGATACCCACCGCACAAGCGCCAGTGGAT
AGGAATTCTTCCAAGCTGTACTACCCAGTTGATGAGGACGATCAACCGAT
CACCGTGCATTTCCATCACCGTTCGTATGAAGATATGATCGAGAAACAGA
GATTTGGTTCTGCGTGCACTGACGGGAAACCTGGACCCAATCCGGATCTC
CAACTTCCTTCAGAAATACCTGGTTGGGTGACGAAGATCGATGAAACGCT
GAAGTACACCTACTTTCGTGACATTTATCGTGCCATCATGAGGCAGCCTT
TCGAGTTAAGCCAGAGCTTGGTTAGAAAATTTGAGGGAGAAAGATGTGTG
GCTAGACTCCACACTACTGGTGAACGACGAGGCATGATAGAAGAGCATTT
ACCTTGTGGGGCTCCATAA