Ggra1402.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1402.t1
Unique NameGgra1402.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000169_piloncontigtig00000169_pilon:180200..180745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1402Ggra1402Gracilaria gracilis GNS1m malegenetig00000169_pilon 180200..180745 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1402.t1.stop1Ggra1402.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000169_pilon 180200..180202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1402.t1.CDS1Ggra1402.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000169_pilon 180200..180745 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1402.t1.exon1Ggra1402.t1.exon1Gracilaria gracilis GNS1m maleexontig00000169_pilon 180200..180745 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1402.t1.start1Ggra1402.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000169_pilon 180743..180745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1402.t1Ggra1402.t1Gracilaria gracilis GNS1m malepolypeptidetig00000169_pilon 180200..180745 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1402.t1 ID=Ggra1402.t1|Name=Ggra1402.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=182bp
MEQVALEITLWAVQLAYAMITYFVLASSTFFVSNEEVQGLLAFLQTSAIM
AVPPFMTWYDRSGFLADEIGTRFLEEIALWALRNGVLVVPVGMYFSAWVD
AFFLWIMAWGNFLHVKISKIHLEGTMRARREGGGRFWSLTPLTEWRVKGL
LVSLTIEDILVNKEKQATLEGSAIRVQHNIS*
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spliced messenger RNA

>Ggra1402.t1 ID=Ggra1402.t1|Name=Ggra1402.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00000169_pilon:180200..180745- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACAGGTCGCCCTAGAGATCACATTATGGGCCGTGCAATTGGCTTA
TGCAATGATCACTTACTTCGTACTAGCATCAAGCACGTTCTTTGTGAGCA
ACGAAGAAGTTCAAGGCTTGCTCGCATTCTTGCAAACGAGCGCCATAATG
GCAGTACCACCGTTCATGACGTGGTATGACCGCAGTGGTTTTCTAGCTGA
TGAAATTGGTACACGATTTCTGGAAGAGATTGCGTTGTGGGCATTACGCA
ACGGAGTGCTTGTGGTACCTGTGGGGATGTATTTTTCCGCGTGGGTTGAT
GCTTTTTTTCTGTGGATTATGGCTTGGGGCAATTTTCTGCATGTTAAAAT
TTCGAAAATTCATCTTGAGGGAACTATGCGAGCACGTCGTGAAGGTGGGG
GACGGTTTTGGTCGCTCACACCGTTGACTGAGTGGCGGGTCAAAGGACTT
CTTGTGTCGTTGACAATTGAGGATATCTTGGTCAACAAGGAGAAGCAGGC
GACGCTAGAGGGAAGTGCAATTCGAGTACAGCATAATATTAGTTGA
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protein sequence of Ggra1402.t1

>Ggra1402.t1 ID=Ggra1402.t1|Name=Ggra1402.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=182bp
MEQVALEITLWAVQLAYAMITYFVLASSTFFVSNEEVQGLLAFLQTSAIM
AVPPFMTWYDRSGFLADEIGTRFLEEIALWALRNGVLVVPVGMYFSAWVD
AFFLWIMAWGNFLHVKISKIHLEGTMRARREGGGRFWSLTPLTEWRVKGL
LVSLTIEDILVNKEKQATLEGSAIRVQHNIS*
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mRNA from alignment at tig00000169_pilon:180200..180745-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1402.t1 ID=Ggra1402.t1|Name=Ggra1402.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00000169_pilon:180200..180745- (Gracilaria gracilis GNS1m male)
ATGGAACAGGTCGCCCTAGAGATCACATTATGGGCCGTGCAATTGGCTTA
TGCAATGATCACTTACTTCGTACTAGCATCAAGCACGTTCTTTGTGAGCA
ACGAAGAAGTTCAAGGCTTGCTCGCATTCTTGCAAACGAGCGCCATAATG
GCAGTACCACCGTTCATGACGTGGTATGACCGCAGTGGTTTTCTAGCTGA
TGAAATTGGTACACGATTTCTGGAAGAGATTGCGTTGTGGGCATTACGCA
ACGGAGTGCTTGTGGTACCTGTGGGGATGTATTTTTCCGCGTGGGTTGAT
GCTTTTTTTCTGTGGATTATGGCTTGGGGCAATTTTCTGCATGTTAAAAT
TTCGAAAATTCATCTTGAGGGAACTATGCGAGCACGTCGTGAAGGTGGGG
GACGGTTTTGGTCGCTCACACCGTTGACTGAGTGGCGGGTCAAAGGACTT
CTTGTGTCGTTGACAATTGAGGATATCTTGGTCAACAAGGAGAAGCAGGC
GACGCTAGAGGGAAGTGCAATTCGAGTACAGCATAATATTAGTTGA
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Coding sequence (CDS) from alignment at tig00000169_pilon:180200..180745-

>Ggra1402.t1 ID=Ggra1402.t1|Name=Ggra1402.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=546bp|location=Sequence derived from alignment at tig00000169_pilon:180200..180745- (Gracilaria gracilis GNS1m male)
ATGGAACAGGTCGCCCTAGAGATCACATTATGGGCCGTGCAATTGGCTTA
TGCAATGATCACTTACTTCGTACTAGCATCAAGCACGTTCTTTGTGAGCA
ACGAAGAAGTTCAAGGCTTGCTCGCATTCTTGCAAACGAGCGCCATAATG
GCAGTACCACCGTTCATGACGTGGTATGACCGCAGTGGTTTTCTAGCTGA
TGAAATTGGTACACGATTTCTGGAAGAGATTGCGTTGTGGGCATTACGCA
ACGGAGTGCTTGTGGTACCTGTGGGGATGTATTTTTCCGCGTGGGTTGAT
GCTTTTTTTCTGTGGATTATGGCTTGGGGCAATTTTCTGCATGTTAAAAT
TTCGAAAATTCATCTTGAGGGAACTATGCGAGCACGTCGTGAAGGTGGGG
GACGGTTTTGGTCGCTCACACCGTTGACTGAGTGGCGGGTCAAAGGACTT
CTTGTGTCGTTGACAATTGAGGATATCTTGGTCAACAAGGAGAAGCAGGC
GACGCTAGAGGGAAGTGCAATTCGAGTACAGCATAATATTAGTTGA
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