Ggra1401.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1401.t1
Unique NameGgra1401.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length506
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000169_piloncontigtig00000169_pilon:161442..162959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog164328.Phyra74600
PFAMsUCH
Max annot lvl4776|Peronosporales
KEGG koko:K11855
Evalue1.38e-33
EggNOG OGsKOG1865@1|root,KOG1865@2759|Eukaryota,3Q72A@4776|Peronosporales
EC3.4.19.12
DescriptionUbiquitin carboxyl-terminal hydrolase
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1401Ggra1401Gracilaria gracilis GNS1m malegenetig00000169_pilon 161442..162959 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1401.t1.start1Ggra1401.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000169_pilon 161442..161444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1401.t1.CDS1Ggra1401.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000169_pilon 161442..162959 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1401.t1.exon1Ggra1401.t1.exon1Gracilaria gracilis GNS1m maleexontig00000169_pilon 161442..162959 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1401.t1.stop1Ggra1401.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000169_pilon 162957..162959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1401.t1Ggra1401.t1Gracilaria gracilis GNS1m malepolypeptidetig00000169_pilon 161442..162959 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1401.t1 ID=Ggra1401.t1|Name=Ggra1401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=506bp
MTSNNPRPDVSIPFFQSSEYNPIDFHTDSDEAAVSDSSESVPSHPFLRLN
RLLPVWKRCKSDLETHTGKKLSISLEPKAMLSLPLASKEKRVVEDINTIL
HRCEPGFYNLGNTCYLNASLQCLLHCRQFVQLVKDHGMHLNAPLHHTQFC
VLDQMYELVQTYYHQNAPQALSLQVFVQNIKTFCPSFEPGHQQDADEFIQ
LLFQGLDDVQCKGCADHPLAQHHHYPGEIGLLVRDSVVGYMNVTITCATC
HQSRTSRTVFTKLSVPTESVASVPASIDTIMKDEVLEGSNAYQCPYCQAL
SMAVVSKKIDEAPNLLIVQLNRFNSLDKVDKFIPYPQVLDIRHHVSEQIH
NDGYELVSVLTHHGPSKTFGHYTADLKCFDGHWCHSDDHKRMKIKPMMGL
SNKAYMLFYQKRLPLLQTNGLAESSAAAEVLESAGERVTDKKEGSIENKP
TPILEEEDSTEGDNSSVADVVNYEEFIGGDEMVESPYIIETPPPRRKAKS
CCTIA*
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spliced messenger RNA

>Ggra1401.t1 ID=Ggra1401.t1|Name=Ggra1401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00000169_pilon:161442..162959+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAGTAACAATCCTCGTCCCGATGTCAGCATCCCTTTCTTTCAAAG
CTCAGAATACAACCCAATTGATTTTCACACCGACTCTGATGAAGCCGCTG
TTAGCGATTCTTCTGAAAGTGTTCCTTCCCATCCCTTTTTGCGTCTCAAT
AGACTCCTCCCGGTATGGAAAAGATGCAAGTCCGACCTAGAAACGCACAC
AGGAAAGAAGCTCAGTATCTCTTTGGAGCCGAAGGCCATGTTATCGCTGC
CGCTCGCCTCCAAAGAGAAGCGCGTCGTCGAAGATATCAACACTATCTTA
CATCGATGCGAACCAGGTTTCTACAATTTGGGTAACACTTGTTATCTCAA
TGCCTCTCTACAGTGTTTGCTTCATTGCCGACAATTTGTTCAGCTCGTCA
AGGACCACGGCATGCACCTCAATGCTCCTCTCCATCACACACAATTCTGT
GTGCTTGATCAGATGTACGAACTTGTTCAAACTTACTACCATCAAAACGC
ACCACAGGCCCTTAGCCTTCAAGTATTCGTGCAGAATATCAAAACGTTTT
GCCCTTCCTTTGAGCCCGGGCATCAGCAAGATGCCGATGAATTCATCCAA
CTTCTCTTTCAGGGACTCGATGATGTGCAGTGCAAAGGCTGTGCTGATCA
TCCGCTCGCACAACATCATCATTACCCAGGTGAGATCGGTCTTCTAGTGA
GGGATTCTGTTGTTGGCTACATGAACGTTACCATTACATGTGCTACTTGT
CATCAGTCTAGGACAAGTAGAACAGTCTTCACCAAACTTTCTGTCCCCAC
TGAATCTGTGGCATCAGTGCCGGCTTCAATCGACACCATTATGAAGGATG
AAGTGCTCGAAGGCTCAAATGCTTACCAGTGCCCTTATTGTCAAGCATTG
TCGATGGCTGTTGTTAGCAAAAAAATTGATGAAGCTCCCAATCTGCTCAT
CGTACAACTGAACCGGTTTAACTCACTTGACAAGGTGGATAAGTTTATCC
CATATCCACAAGTTCTTGATATTCGTCATCATGTTAGCGAGCAAATTCAC
AACGACGGCTATGAGCTGGTCTCTGTGCTCACCCATCATGGCCCATCCAA
GACTTTTGGCCATTATACTGCAGATCTCAAGTGCTTCGATGGCCATTGGT
GTCATTCCGATGACCACAAGCGCATGAAAATCAAACCCATGATGGGACTG
AGCAACAAGGCTTATATGCTGTTCTACCAAAAGAGATTACCGCTGTTGCA
AACCAATGGCCTAGCGGAGAGTTCAGCAGCAGCGGAGGTGCTGGAGAGTG
CGGGAGAAAGAGTGACGGACAAGAAAGAAGGAAGCATTGAGAATAAGCCA
ACGCCCATATTGGAGGAGGAAGACAGTACAGAAGGCGATAATAGTAGTGT
GGCGGATGTAGTCAACTACGAAGAATTTATTGGAGGTGATGAAATGGTTG
AGAGCCCTTATATTATTGAGACACCTCCACCTCGGAGGAAAGCCAAGTCC
TGCTGTACTATAGCTTAG
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protein sequence of Ggra1401.t1

>Ggra1401.t1 ID=Ggra1401.t1|Name=Ggra1401.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=506bp
MTSNNPRPDVSIPFFQSSEYNPIDFHTDSDEAAVSDSSESVPSHPFLRLN
RLLPVWKRCKSDLETHTGKKLSISLEPKAMLSLPLASKEKRVVEDINTIL
HRCEPGFYNLGNTCYLNASLQCLLHCRQFVQLVKDHGMHLNAPLHHTQFC
VLDQMYELVQTYYHQNAPQALSLQVFVQNIKTFCPSFEPGHQQDADEFIQ
LLFQGLDDVQCKGCADHPLAQHHHYPGEIGLLVRDSVVGYMNVTITCATC
HQSRTSRTVFTKLSVPTESVASVPASIDTIMKDEVLEGSNAYQCPYCQAL
SMAVVSKKIDEAPNLLIVQLNRFNSLDKVDKFIPYPQVLDIRHHVSEQIH
NDGYELVSVLTHHGPSKTFGHYTADLKCFDGHWCHSDDHKRMKIKPMMGL
SNKAYMLFYQKRLPLLQTNGLAESSAAAEVLESAGERVTDKKEGSIENKP
TPILEEEDSTEGDNSSVADVVNYEEFIGGDEMVESPYIIETPPPRRKAKS
CCTIA*
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mRNA from alignment at tig00000169_pilon:161442..162959+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1401.t1 ID=Ggra1401.t1|Name=Ggra1401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00000169_pilon:161442..162959+ (Gracilaria gracilis GNS1m male)
ATGACTAGTAACAATCCTCGTCCCGATGTCAGCATCCCTTTCTTTCAAAG
CTCAGAATACAACCCAATTGATTTTCACACCGACTCTGATGAAGCCGCTG
TTAGCGATTCTTCTGAAAGTGTTCCTTCCCATCCCTTTTTGCGTCTCAAT
AGACTCCTCCCGGTATGGAAAAGATGCAAGTCCGACCTAGAAACGCACAC
AGGAAAGAAGCTCAGTATCTCTTTGGAGCCGAAGGCCATGTTATCGCTGC
CGCTCGCCTCCAAAGAGAAGCGCGTCGTCGAAGATATCAACACTATCTTA
CATCGATGCGAACCAGGTTTCTACAATTTGGGTAACACTTGTTATCTCAA
TGCCTCTCTACAGTGTTTGCTTCATTGCCGACAATTTGTTCAGCTCGTCA
AGGACCACGGCATGCACCTCAATGCTCCTCTCCATCACACACAATTCTGT
GTGCTTGATCAGATGTACGAACTTGTTCAAACTTACTACCATCAAAACGC
ACCACAGGCCCTTAGCCTTCAAGTATTCGTGCAGAATATCAAAACGTTTT
GCCCTTCCTTTGAGCCCGGGCATCAGCAAGATGCCGATGAATTCATCCAA
CTTCTCTTTCAGGGACTCGATGATGTGCAGTGCAAAGGCTGTGCTGATCA
TCCGCTCGCACAACATCATCATTACCCAGGTGAGATCGGTCTTCTAGTGA
GGGATTCTGTTGTTGGCTACATGAACGTTACCATTACATGTGCTACTTGT
CATCAGTCTAGGACAAGTAGAACAGTCTTCACCAAACTTTCTGTCCCCAC
TGAATCTGTGGCATCAGTGCCGGCTTCAATCGACACCATTATGAAGGATG
AAGTGCTCGAAGGCTCAAATGCTTACCAGTGCCCTTATTGTCAAGCATTG
TCGATGGCTGTTGTTAGCAAAAAAATTGATGAAGCTCCCAATCTGCTCAT
CGTACAACTGAACCGGTTTAACTCACTTGACAAGGTGGATAAGTTTATCC
CATATCCACAAGTTCTTGATATTCGTCATCATGTTAGCGAGCAAATTCAC
AACGACGGCTATGAGCTGGTCTCTGTGCTCACCCATCATGGCCCATCCAA
GACTTTTGGCCATTATACTGCAGATCTCAAGTGCTTCGATGGCCATTGGT
GTCATTCCGATGACCACAAGCGCATGAAAATCAAACCCATGATGGGACTG
AGCAACAAGGCTTATATGCTGTTCTACCAAAAGAGATTACCGCTGTTGCA
AACCAATGGCCTAGCGGAGAGTTCAGCAGCAGCGGAGGTGCTGGAGAGTG
CGGGAGAAAGAGTGACGGACAAGAAAGAAGGAAGCATTGAGAATAAGCCA
ACGCCCATATTGGAGGAGGAAGACAGTACAGAAGGCGATAATAGTAGTGT
GGCGGATGTAGTCAACTACGAAGAATTTATTGGAGGTGATGAAATGGTTG
AGAGCCCTTATATTATTGAGACACCTCCACCTCGGAGGAAAGCCAAGTCC
TGCTGTACTATAGCTTAG
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Coding sequence (CDS) from alignment at tig00000169_pilon:161442..162959+

>Ggra1401.t1 ID=Ggra1401.t1|Name=Ggra1401.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1518bp|location=Sequence derived from alignment at tig00000169_pilon:161442..162959+ (Gracilaria gracilis GNS1m male)
ATGACTAGTAACAATCCTCGTCCCGATGTCAGCATCCCTTTCTTTCAAAG
CTCAGAATACAACCCAATTGATTTTCACACCGACTCTGATGAAGCCGCTG
TTAGCGATTCTTCTGAAAGTGTTCCTTCCCATCCCTTTTTGCGTCTCAAT
AGACTCCTCCCGGTATGGAAAAGATGCAAGTCCGACCTAGAAACGCACAC
AGGAAAGAAGCTCAGTATCTCTTTGGAGCCGAAGGCCATGTTATCGCTGC
CGCTCGCCTCCAAAGAGAAGCGCGTCGTCGAAGATATCAACACTATCTTA
CATCGATGCGAACCAGGTTTCTACAATTTGGGTAACACTTGTTATCTCAA
TGCCTCTCTACAGTGTTTGCTTCATTGCCGACAATTTGTTCAGCTCGTCA
AGGACCACGGCATGCACCTCAATGCTCCTCTCCATCACACACAATTCTGT
GTGCTTGATCAGATGTACGAACTTGTTCAAACTTACTACCATCAAAACGC
ACCACAGGCCCTTAGCCTTCAAGTATTCGTGCAGAATATCAAAACGTTTT
GCCCTTCCTTTGAGCCCGGGCATCAGCAAGATGCCGATGAATTCATCCAA
CTTCTCTTTCAGGGACTCGATGATGTGCAGTGCAAAGGCTGTGCTGATCA
TCCGCTCGCACAACATCATCATTACCCAGGTGAGATCGGTCTTCTAGTGA
GGGATTCTGTTGTTGGCTACATGAACGTTACCATTACATGTGCTACTTGT
CATCAGTCTAGGACAAGTAGAACAGTCTTCACCAAACTTTCTGTCCCCAC
TGAATCTGTGGCATCAGTGCCGGCTTCAATCGACACCATTATGAAGGATG
AAGTGCTCGAAGGCTCAAATGCTTACCAGTGCCCTTATTGTCAAGCATTG
TCGATGGCTGTTGTTAGCAAAAAAATTGATGAAGCTCCCAATCTGCTCAT
CGTACAACTGAACCGGTTTAACTCACTTGACAAGGTGGATAAGTTTATCC
CATATCCACAAGTTCTTGATATTCGTCATCATGTTAGCGAGCAAATTCAC
AACGACGGCTATGAGCTGGTCTCTGTGCTCACCCATCATGGCCCATCCAA
GACTTTTGGCCATTATACTGCAGATCTCAAGTGCTTCGATGGCCATTGGT
GTCATTCCGATGACCACAAGCGCATGAAAATCAAACCCATGATGGGACTG
AGCAACAAGGCTTATATGCTGTTCTACCAAAAGAGATTACCGCTGTTGCA
AACCAATGGCCTAGCGGAGAGTTCAGCAGCAGCGGAGGTGCTGGAGAGTG
CGGGAGAAAGAGTGACGGACAAGAAAGAAGGAAGCATTGAGAATAAGCCA
ACGCCCATATTGGAGGAGGAAGACAGTACAGAAGGCGATAATAGTAGTGT
GGCGGATGTAGTCAACTACGAAGAATTTATTGGAGGTGATGAAATGGTTG
AGAGCCCTTATATTATTGAGACACCTCCACCTCGGAGGAAAGCCAAGTCC
TGCTGTACTATAGCTTAG
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