Ggra1400.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1400.t1
Unique NameGgra1400.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000169_piloncontigtig00000169_pilon:158255..159931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog756272.Plabr_3820
PFAMsAn_peroxidase
Max annot lvl203682|Planctomycetes
Evalue1.15e-50
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,2J53M@203682|Planctomycetes
DescriptionAnimal haem peroxidase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1400Ggra1400Gracilaria gracilis GNS1m malegenetig00000169_pilon 158255..159931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1400.t1Ggra1400.t1Gracilaria gracilis GNS1m malepolypeptidetig00000169_pilon 158255..159931 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1400.t1.start1Ggra1400.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000169_pilon 158255..158257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1400.t1.CDS1Ggra1400.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000169_pilon 158255..159223 +
Ggra1400.t1.CDS2Ggra1400.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000169_pilon 159515..159931 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1400.t1.exon1Ggra1400.t1.exon1Gracilaria gracilis GNS1m maleexontig00000169_pilon 158255..159223 +
Ggra1400.t1.exon2Ggra1400.t1.exon2Gracilaria gracilis GNS1m maleexontig00000169_pilon 159515..159931 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1400.t1.intron1Ggra1400.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000169_pilon 159224..159514 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1400.t1.stop1Ggra1400.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000169_pilon 159929..159931 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1400.t1 ID=Ggra1400.t1|Name=Ggra1400.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp
MSLYAVLLTAVLIGVASAQQPFTNVRGKDAFSFRPLPPRRGPLRAFPDPE
CTGLTFRTLTGRCTSIIDPTLGEARRAQFSYFDVNSAVFDGDGLPSPREV
SNVVIEQEGDTSNSRGLNEMFTFFGAFVDHDFAFTPVAPDEQMDIAIPEG
DPILSVPSLKFFRSERAKVSDSSNIERPITLTSSALDLSMVYGNDDERNA
FIRLEGDCRLRTQGDKLLPLNTEGFVNAPNNSPGFFVAGDIRVNETPMIA
VMHTIWVREHNNICDLLESDLGPLGTDSDELYEVARAVTIAEYQKILFEE
WLPAILGSGVAPYRGYRRDVDPTRSRDHNLVRFNDLRELFVGSRATTFEE
ISTSAAENLRAVYGDVDNVEAWVGLVAENKANGSGAGPTLGALLRTEFER
LRDGDQFFFQSVGRFPVSVRVRFPRINAELFGSQPLFNKILLRTTGVSAS
NLDAARNAFLI*
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spliced messenger RNA

>Ggra1400.t1 ID=Ggra1400.t1|Name=Ggra1400.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000169_pilon:158255..159931+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTCTATGCTGTGCTTCTGACGGCTGTCTTAATCGGAGTTGCATC
CGCGCAACAGCCATTCACTAATGTGCGCGGCAAAGATGCATTTAGTTTCC
GTCCCCTCCCGCCGCGAAGAGGTCCACTCCGCGCTTTCCCCGATCCTGAA
TGTACTGGCCTAACCTTCCGCACGCTGACGGGAAGGTGCACTTCTATAAT
AGACCCGACTCTTGGAGAAGCTCGCCGTGCTCAGTTCAGTTATTTCGATG
TCAACTCCGCCGTGTTTGATGGAGATGGATTACCAAGCCCGCGGGAGGTG
TCAAATGTTGTGATTGAACAGGAAGGAGATACTTCTAACTCTCGAGGACT
CAACGAAATGTTCACCTTCTTTGGGGCGTTCGTAGATCACGATTTCGCTT
TCACTCCTGTAGCTCCAGACGAACAGATGGATATTGCGATTCCTGAAGGT
GATCCGATACTCTCAGTACCTTCTCTCAAGTTCTTCCGGTCCGAACGTGC
CAAGGTCAGTGATTCTTCCAACATCGAACGTCCGATCACTCTCACTTCCT
CTGCGCTTGATTTGTCCATGGTTTACGGAAATGATGACGAGCGAAACGCT
TTCATCCGCTTGGAAGGCGACTGTCGTCTTAGAACGCAGGGTGATAAGCT
TCTACCGTTGAATACTGAGGGTTTTGTGAATGCGCCTAACAACTCGCCCG
GTTTCTTCGTTGCAGGCGACATACGAGTGAATGAGACTCCCATGATTGCT
GTCATGCATACCATATGGGTGCGTGAACACAACAATATCTGTGACTTGTT
GGAGTCGGATCTTGGACCACTCGGAACCGACTCAGATGAGCTCTACGAGG
TGGCACGAGCCGTGACGATTGCGGAATACCAAAAAATCCTGTTCGAAGAA
TGGCTTCCGGCGATCTTGGGCTCTGGAGTTGCGCCGTACCGGGGATATCG
ACGAGATGTAGACCCTACGcgcTCACGAGACCATAACCTTGTGAGATTCA
ACGACCTTCGTGAACTGTTCGTGGGTTCAAGAGCGACTACCTTTGAAGAG
ATTTCCACAAGCGCGGCCGAAAACCTGAGGGCTGTGTACGGAGATGTGGA
CAACGTGGAGGCTTGGGTGGGACTGGTTGCCGAGAACAAGGCAAATGGAT
CTGGAGCGGGGCCAACTCTTGGTGCGTTGCTGCGTACAGAGTTCGAACGG
CTTCGCGATGGCGATCAATTCTTCTTCCAGAGCGTTGGTCGGTTCCCCGT
TAGTGTGCGGGTGCGGTTCCCACGAATCAATGCAGAGTTGTTCGGATCAC
AGCCGTTGTTCAACAAGATTTTATTGCGCACTACCGGTGTGAGTGCTTCG
AATTTGGATGCTGCACGAAATGCTTTCCTTATCTGA
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protein sequence of Ggra1400.t1

>Ggra1400.t1 ID=Ggra1400.t1|Name=Ggra1400.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=462bp
MSLYAVLLTAVLIGVASAQQPFTNVRGKDAFSFRPLPPRRGPLRAFPDPE
CTGLTFRTLTGRCTSIIDPTLGEARRAQFSYFDVNSAVFDGDGLPSPREV
SNVVIEQEGDTSNSRGLNEMFTFFGAFVDHDFAFTPVAPDEQMDIAIPEG
DPILSVPSLKFFRSERAKVSDSSNIERPITLTSSALDLSMVYGNDDERNA
FIRLEGDCRLRTQGDKLLPLNTEGFVNAPNNSPGFFVAGDIRVNETPMIA
VMHTIWVREHNNICDLLESDLGPLGTDSDELYEVARAVTIAEYQKILFEE
WLPAILGSGVAPYRGYRRDVDPTRSRDHNLVRFNDLRELFVGSRATTFEE
ISTSAAENLRAVYGDVDNVEAWVGLVAENKANGSGAGPTLGALLRTEFER
LRDGDQFFFQSVGRFPVSVRVRFPRINAELFGSQPLFNKILLRTTGVSAS
NLDAARNAFLI*
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mRNA from alignment at tig00000169_pilon:158255..159931+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1400.t1 ID=Ggra1400.t1|Name=Ggra1400.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1677bp|location=Sequence derived from alignment at tig00000169_pilon:158255..159931+ (Gracilaria gracilis GNS1m male)
ATGTCTCTCTATGCTGTGCTTCTGACGGCTGTCTTAATCGGAGTTGCATC
CGCGCAACAGCCATTCACTAATGTGCGCGGCAAAGATGCATTTAGTTTCC
GTCCCCTCCCGCCGCGAAGAGGTCCACTCCGCGCTTTCCCCGATCCTGAA
TGTACTGGCCTAACCTTCCGCACGCTGACGGGAAGGTGCACTTCTATAAT
AGACCCGACTCTTGGAGAAGCTCGCCGTGCTCAGTTCAGTTATTTCGATG
TCAACTCCGCCGTGTTTGATGGAGATGGATTACCAAGCCCGCGGGAGGTG
TCAAATGTTGTGATTGAACAGGAAGGAGATACTTCTAACTCTCGAGGACT
CAACGAAATGTTCACCTTCTTTGGGGCGTTCGTAGATCACGATTTCGCTT
TCACTCCTGTAGCTCCAGACGAACAGATGGATATTGCGATTCCTGAAGGT
GATCCGATACTCTCAGTACCTTCTCTCAAGTTCTTCCGGTCCGAACGTGC
CAAGGTCAGTGATTCTTCCAACATCGAACGTCCGATCACTCTCACTTCCT
CTGCGCTTGATTTGTCCATGGTTTACGGAAATGATGACGAGCGAAACGCT
TTCATCCGCTTGGAAGGCGACTGTCGTCTTAGAACGCAGGGTGATAAGCT
TCTACCGTTGAATACTGAGGGTTTTGTGAATGCGCCTAACAACTCGCCCG
GTTTCTTCGTTGCAGGCGACATACGAGTGAATGAGACTCCCATGATTGCT
GTCATGCATACCATATGGGTGCGTGAACACAACAATATCTGTGACTTGTT
GGAGTCGGATCTTGGACCACTCGGAACCGACTCAGATGAGCTCTACGAGG
TGGCACGAGCCGTGACGATTGCGGAATACCAAAAAATCCTGTTCGAAGAA
TGGCTTCCGGCGATCTTGGGCTCTGGAGTTGCGCCGTACCGGGGATATCG
ACGAGATGTAGACCCTACGGTGAGTGTGGAAttcactacagctggtttcc
gattcggacatactctggtgggagctgatgtttcacgcattgatgcgcaa
ggcagggtgttggatccgattccagcggaagacatgtttttcatgcccag
cacagagttcacttctcagaaactggacgaatttattcgcggagctgctg
caacgctcgcacaggagtttgatgagaaggtagtggacattctacgaaac
ttcttgttcaaaaacgttcccgatcaagacgggttggacctgatttcgct
caacctacagcgcTCACGAGACCATAACCTTGTGAGATTCAACGACCTTC
GTGAACTGTTCGTGGGTTCAAGAGCGACTACCTTTGAAGAGATTTCCACA
AGCGCGGCCGAAAACCTGAGGGCTGTGTACGGAGATGTGGACAACGTGGA
GGCTTGGGTGGGACTGGTTGCCGAGAACAAGGCAAATGGATCTGGAGCGG
GGCCAACTCTTGGTGCGTTGCTGCGTACAGAGTTCGAACGGCTTCGCGAT
GGCGATCAATTCTTCTTCCAGAGCGTTGGTCGGTTCCCCGTTAGTGTGCG
GGTGCGGTTCCCACGAATCAATGCAGAGTTGTTCGGATCACAGCCGTTGT
TCAACAAGATTTTATTGCGCACTACCGGTGTGAGTGCTTCGAATTTGGAT
GCTGCACGAAATGCTTTCCTTATCTGA
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Coding sequence (CDS) from alignment at tig00000169_pilon:158255..159931+

>Ggra1400.t1 ID=Ggra1400.t1|Name=Ggra1400.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1386bp|location=Sequence derived from alignment at tig00000169_pilon:158255..159931+ (Gracilaria gracilis GNS1m male)
ATGTCTCTCTATGCTGTGCTTCTGACGGCTGTCTTAATCGGAGTTGCATC
CGCGCAACAGCCATTCACTAATGTGCGCGGCAAAGATGCATTTAGTTTCC
GTCCCCTCCCGCCGCGAAGAGGTCCACTCCGCGCTTTCCCCGATCCTGAA
TGTACTGGCCTAACCTTCCGCACGCTGACGGGAAGGTGCACTTCTATAAT
AGACCCGACTCTTGGAGAAGCTCGCCGTGCTCAGTTCAGTTATTTCGATG
TCAACTCCGCCGTGTTTGATGGAGATGGATTACCAAGCCCGCGGGAGGTG
TCAAATGTTGTGATTGAACAGGAAGGAGATACTTCTAACTCTCGAGGACT
CAACGAAATGTTCACCTTCTTTGGGGCGTTCGTAGATCACGATTTCGCTT
TCACTCCTGTAGCTCCAGACGAACAGATGGATATTGCGATTCCTGAAGGT
GATCCGATACTCTCAGTACCTTCTCTCAAGTTCTTCCGGTCCGAACGTGC
CAAGGTCAGTGATTCTTCCAACATCGAACGTCCGATCACTCTCACTTCCT
CTGCGCTTGATTTGTCCATGGTTTACGGAAATGATGACGAGCGAAACGCT
TTCATCCGCTTGGAAGGCGACTGTCGTCTTAGAACGCAGGGTGATAAGCT
TCTACCGTTGAATACTGAGGGTTTTGTGAATGCGCCTAACAACTCGCCCG
GTTTCTTCGTTGCAGGCGACATACGAGTGAATGAGACTCCCATGATTGCT
GTCATGCATACCATATGGGTGCGTGAACACAACAATATCTGTGACTTGTT
GGAGTCGGATCTTGGACCACTCGGAACCGACTCAGATGAGCTCTACGAGG
TGGCACGAGCCGTGACGATTGCGGAATACCAAAAAATCCTGTTCGAAGAA
TGGCTTCCGGCGATCTTGGGCTCTGGAGTTGCGCCGTACCGGGGATATCG
ACGAGATGTAGACCCTACGcgcTCACGAGACCATAACCTTGTGAGATTCA
ACGACCTTCGTGAACTGTTCGTGGGTTCAAGAGCGACTACCTTTGAAGAG
ATTTCCACAAGCGCGGCCGAAAACCTGAGGGCTGTGTACGGAGATGTGGA
CAACGTGGAGGCTTGGGTGGGACTGGTTGCCGAGAACAAGGCAAATGGAT
CTGGAGCGGGGCCAACTCTTGGTGCGTTGCTGCGTACAGAGTTCGAACGG
CTTCGCGATGGCGATCAATTCTTCTTCCAGAGCGTTGGTCGGTTCCCCGT
TAGTGTGCGGGTGCGGTTCCCACGAATCAATGCAGAGTTGTTCGGATCAC
AGCCGTTGTTCAACAAGATTTTATTGCGCACTACCGGTGTGAGTGCTTCG
AATTTGGATGCTGCACGAAATGCTTTCCTTATCTGA
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