Ggra1399.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1399.t1
Unique NameGgra1399.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length400
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000169_piloncontigtig00000169_pilon:152486..153685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1399Ggra1399Gracilaria gracilis GNS1m malegenetig00000169_pilon 152486..153685 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1399.t1.start1Ggra1399.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000169_pilon 152486..152488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1399.t1.CDS1Ggra1399.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000169_pilon 152486..153685 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1399.t1.exon1Ggra1399.t1.exon1Gracilaria gracilis GNS1m maleexontig00000169_pilon 152486..153685 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1399.t1.stop1Ggra1399.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000169_pilon 153683..153685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1399.t1Ggra1399.t1Gracilaria gracilis GNS1m malepolypeptidetig00000169_pilon 152486..153685 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1399.t1 ID=Ggra1399.t1|Name=Ggra1399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=400bp
MYRYFLSLAVFTVLFGHALSDSLPTQPPTPPPQWSCNANPLPDVEPCDTG
SICFAIDQSETISTKEYRKENKFVSQFAEMASKYSGSQAFLSAVAFADDA
EVIQSPTDSLSDFLEGIDSSRRFDGEKSFVAAFNKCHQLLRCGQGKKTIV
LVSDGQASGLQKLMLSDHAEWLKKSGTLLVTAAIGCDADIELLKDNASVE
ELFVDLNQDDRKVCEEGKRAVQLICAREDVNGGTCGGCNCCGCTSCGCNN
GGGGGDTDCEKAFDECEFTFEGHDKLATFDATGRADKSFTPLIVSKDEDV
EVGVLNMNDVIPQFINENGAHEITEFGSQPFTPTNFKPYSIKGTHGSGIG
HETYHGDQSQLARDKCVRVFFTNMQVWNGDEATNLNDLPKSKCVVFRTM*
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spliced messenger RNA

>Ggra1399.t1 ID=Ggra1399.t1|Name=Ggra1399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000169_pilon:152486..153685+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCGCTACTTTCTATCACTCGCGGTGTTCACCGTACTTTTTGGCCA
CGCACTCTCAGACTCCTTGCCTACCCAACCACCTACCCCTCCTCCGCAAT
GGTCGTGCAACGCTAATCCACTGCCCGATGTCGAACCGTGTGACACTGGC
AGCATATGCTTCGCCATCGATCAATCCGAAACGATAAGCACGAAGGAGTA
TCGCAAAGAAAACAAATTTGTGTCTCAATTTGCCGAGATGGCCAGCAAAT
ACTCTGGTTCGCAGGCGTTCCTCTCCGCAGTAGCATTCGCAGACGATGCA
GAGGTGATTCAAAGCCCCACAGACAGCCTGTCCGACTTCCTAGAGGGCAT
CGATAGTTCTCGTCGTTTTGACGGGGAGAAGTCGTTCGTTGCCGCATTCA
ACAAGTGCCATCAGCTGCTGCGGTGCGGCCAGGGAAAGAAAACGATTGTG
TTAGTGAGCGATGGGCAAGCGTCAGGTTTGCAAAAGTTAATGCTCTCCGA
CCATGCGGAATGGCTGAAGAAATCTGGCACGTTGCTTGTGACGGCGGCGA
TCGGCTGCGATGCGGATATTGAGCTGCTCAAGGACAATGCAAGCGTAGAA
GAACTTTTCGTAGACCTGAACCAAGACGACAGAAAGGTGTGCGAAGAAGG
CAAGAGAGCAGTGCAATTGATTTGCGCCAGGGAAGATGTCAACGGCGGAA
CATGTGGCGGTTGTAACTGCTGCGGATGCACAAGTTGCGGATGCAACAAC
GGCGGTGGCGGCGGTGACACTGACTGTGAGAAAGCGTTCGATGAATGTGA
GTTCACATTTGAAGGGCATGATAAACTAGCTACTTTCGACGCCACGGGAC
GCGCGGATAAGAGCTTTACGCCGCTGATTGTGTCCAAGGACGAGGACGTA
GAGGTGGGTGTGCTGAACATGAACGATGTCATCCCGCAATTCATCAACGA
AAATGGCGCGCATGAGATTACAGAATTCGGATCGCAGCCGTTTACGCCTA
CTAACTTCAAGCCGTACTCGATTAAGGGGACTCATGGCTCGGGTATTGGC
CATGAGACTTACCATGGCGATCAGAGCCAGCTGGCTCGGGACAAGTGTGT
GCGGGTCTTCTTCACGAATATGCAGGTGTGGAATGGAGACGAAGCTACGA
ATTTGAATGACCTGCCGAAGAGCAAGTGCGTGGTGTTCCGCACCATGTAG
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protein sequence of Ggra1399.t1

>Ggra1399.t1 ID=Ggra1399.t1|Name=Ggra1399.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=400bp
MYRYFLSLAVFTVLFGHALSDSLPTQPPTPPPQWSCNANPLPDVEPCDTG
SICFAIDQSETISTKEYRKENKFVSQFAEMASKYSGSQAFLSAVAFADDA
EVIQSPTDSLSDFLEGIDSSRRFDGEKSFVAAFNKCHQLLRCGQGKKTIV
LVSDGQASGLQKLMLSDHAEWLKKSGTLLVTAAIGCDADIELLKDNASVE
ELFVDLNQDDRKVCEEGKRAVQLICAREDVNGGTCGGCNCCGCTSCGCNN
GGGGGDTDCEKAFDECEFTFEGHDKLATFDATGRADKSFTPLIVSKDEDV
EVGVLNMNDVIPQFINENGAHEITEFGSQPFTPTNFKPYSIKGTHGSGIG
HETYHGDQSQLARDKCVRVFFTNMQVWNGDEATNLNDLPKSKCVVFRTM*
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mRNA from alignment at tig00000169_pilon:152486..153685+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1399.t1 ID=Ggra1399.t1|Name=Ggra1399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000169_pilon:152486..153685+ (Gracilaria gracilis GNS1m male)
ATGTACCGCTACTTTCTATCACTCGCGGTGTTCACCGTACTTTTTGGCCA
CGCACTCTCAGACTCCTTGCCTACCCAACCACCTACCCCTCCTCCGCAAT
GGTCGTGCAACGCTAATCCACTGCCCGATGTCGAACCGTGTGACACTGGC
AGCATATGCTTCGCCATCGATCAATCCGAAACGATAAGCACGAAGGAGTA
TCGCAAAGAAAACAAATTTGTGTCTCAATTTGCCGAGATGGCCAGCAAAT
ACTCTGGTTCGCAGGCGTTCCTCTCCGCAGTAGCATTCGCAGACGATGCA
GAGGTGATTCAAAGCCCCACAGACAGCCTGTCCGACTTCCTAGAGGGCAT
CGATAGTTCTCGTCGTTTTGACGGGGAGAAGTCGTTCGTTGCCGCATTCA
ACAAGTGCCATCAGCTGCTGCGGTGCGGCCAGGGAAAGAAAACGATTGTG
TTAGTGAGCGATGGGCAAGCGTCAGGTTTGCAAAAGTTAATGCTCTCCGA
CCATGCGGAATGGCTGAAGAAATCTGGCACGTTGCTTGTGACGGCGGCGA
TCGGCTGCGATGCGGATATTGAGCTGCTCAAGGACAATGCAAGCGTAGAA
GAACTTTTCGTAGACCTGAACCAAGACGACAGAAAGGTGTGCGAAGAAGG
CAAGAGAGCAGTGCAATTGATTTGCGCCAGGGAAGATGTCAACGGCGGAA
CATGTGGCGGTTGTAACTGCTGCGGATGCACAAGTTGCGGATGCAACAAC
GGCGGTGGCGGCGGTGACACTGACTGTGAGAAAGCGTTCGATGAATGTGA
GTTCACATTTGAAGGGCATGATAAACTAGCTACTTTCGACGCCACGGGAC
GCGCGGATAAGAGCTTTACGCCGCTGATTGTGTCCAAGGACGAGGACGTA
GAGGTGGGTGTGCTGAACATGAACGATGTCATCCCGCAATTCATCAACGA
AAATGGCGCGCATGAGATTACAGAATTCGGATCGCAGCCGTTTACGCCTA
CTAACTTCAAGCCGTACTCGATTAAGGGGACTCATGGCTCGGGTATTGGC
CATGAGACTTACCATGGCGATCAGAGCCAGCTGGCTCGGGACAAGTGTGT
GCGGGTCTTCTTCACGAATATGCAGGTGTGGAATGGAGACGAAGCTACGA
ATTTGAATGACCTGCCGAAGAGCAAGTGCGTGGTGTTCCGCACCATGTAG
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Coding sequence (CDS) from alignment at tig00000169_pilon:152486..153685+

>Ggra1399.t1 ID=Ggra1399.t1|Name=Ggra1399.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1200bp|location=Sequence derived from alignment at tig00000169_pilon:152486..153685+ (Gracilaria gracilis GNS1m male)
ATGTACCGCTACTTTCTATCACTCGCGGTGTTCACCGTACTTTTTGGCCA
CGCACTCTCAGACTCCTTGCCTACCCAACCACCTACCCCTCCTCCGCAAT
GGTCGTGCAACGCTAATCCACTGCCCGATGTCGAACCGTGTGACACTGGC
AGCATATGCTTCGCCATCGATCAATCCGAAACGATAAGCACGAAGGAGTA
TCGCAAAGAAAACAAATTTGTGTCTCAATTTGCCGAGATGGCCAGCAAAT
ACTCTGGTTCGCAGGCGTTCCTCTCCGCAGTAGCATTCGCAGACGATGCA
GAGGTGATTCAAAGCCCCACAGACAGCCTGTCCGACTTCCTAGAGGGCAT
CGATAGTTCTCGTCGTTTTGACGGGGAGAAGTCGTTCGTTGCCGCATTCA
ACAAGTGCCATCAGCTGCTGCGGTGCGGCCAGGGAAAGAAAACGATTGTG
TTAGTGAGCGATGGGCAAGCGTCAGGTTTGCAAAAGTTAATGCTCTCCGA
CCATGCGGAATGGCTGAAGAAATCTGGCACGTTGCTTGTGACGGCGGCGA
TCGGCTGCGATGCGGATATTGAGCTGCTCAAGGACAATGCAAGCGTAGAA
GAACTTTTCGTAGACCTGAACCAAGACGACAGAAAGGTGTGCGAAGAAGG
CAAGAGAGCAGTGCAATTGATTTGCGCCAGGGAAGATGTCAACGGCGGAA
CATGTGGCGGTTGTAACTGCTGCGGATGCACAAGTTGCGGATGCAACAAC
GGCGGTGGCGGCGGTGACACTGACTGTGAGAAAGCGTTCGATGAATGTGA
GTTCACATTTGAAGGGCATGATAAACTAGCTACTTTCGACGCCACGGGAC
GCGCGGATAAGAGCTTTACGCCGCTGATTGTGTCCAAGGACGAGGACGTA
GAGGTGGGTGTGCTGAACATGAACGATGTCATCCCGCAATTCATCAACGA
AAATGGCGCGCATGAGATTACAGAATTCGGATCGCAGCCGTTTACGCCTA
CTAACTTCAAGCCGTACTCGATTAAGGGGACTCATGGCTCGGGTATTGGC
CATGAGACTTACCATGGCGATCAGAGCCAGCTGGCTCGGGACAAGTGTGT
GCGGGTCTTCTTCACGAATATGCAGGTGTGGAATGGAGACGAAGCTACGA
ATTTGAATGACCTGCCGAAGAGCAAGTGCGTGGTGTTCCGCACCATGTAG
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