Ggra1398.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1398.t1
Unique NameGgra1398.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000169_piloncontigtig00000169_pilon:114969..115457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog115417.EPrPW00000021784
PFAMsAARP2CN,RIBIOP_C
Max annot lvl121069|Pythiales
Evalue1.53e-53
EggNOG OGsCOG5192@1|root,KOG1951@2759|Eukaryota,1MBVK@121069|Pythiales
DescriptionRibosome biogenesis protein BMS1. Source PGD
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1398Ggra1398Gracilaria gracilis GNS1m malegenetig00000169_pilon 114969..115457 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1398.t1.start1Ggra1398.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000169_pilon 114969..114971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1398.t1.CDS1Ggra1398.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000169_pilon 114969..115457 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1398.t1.exon1Ggra1398.t1.exon1Gracilaria gracilis GNS1m maleexontig00000169_pilon 114969..115457 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1398.t1.stop1Ggra1398.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000169_pilon 115455..115457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1398.t1Ggra1398.t1Gracilaria gracilis GNS1m malepolypeptidetig00000169_pilon 114969..115457 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1398.t1 ID=Ggra1398.t1|Name=Ggra1398.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=163bp
MGVGWRRFEILPIYHIEDQGGRRRYLKYTPEYLHCSATFRAPSVAPGAGV
IMCQTLGRERTSFRIAGTGVVAELDTVFKVVKKLKLVGEPVKVHKNTAFI
KGTFNSELEVSQYLGASVRTVSGVRGTIKKAITPSSPGNMLDRDLAKSPA
GTFRAGFEDKIL*
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spliced messenger RNA

>Ggra1398.t1 ID=Ggra1398.t1|Name=Ggra1398.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00000169_pilon:114969..115457+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTTGGCTGGCGCCGATTTGAGATACTTCCTATATACCATATTGA
GGATCAAGGTGGAAGACGGAGGTATTTGAAGTATACCCCTGAATATTTGC
ACTGCAGTGCCACATTCCGGGCACCAAGTGTGGCCCCAGGGGCTGGCGTT
ATCATGTGCCAAACGCTTGGAAGAGAGCGGACAAGTTTTCGTATAGCTGG
AACTGGTGTGGTTGCTGAACTGGATACCGTTTTCAAAGTAGTGAAGAAAT
TGAAGTTGGTTGGAGAACCAGTAAAAGTGCATAAGAACACAGCATTTATT
AAGGGCACGTTCAACTCAGAACTCGAAGTTTCCCAATACCTTGGTGCCAG
TGTGCGAACGGTAAGTGGTGTTCGAGGAACTATAAAGAAAGCCATAACTC
CGAGCTCTCCAGGAAACATGCTTGATCGTGACCTGGCTAAGAGCCCAGCT
GGTACTTTTCGTGCTGGGTTTGAAGATAAGATCTTGTGA
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protein sequence of Ggra1398.t1

>Ggra1398.t1 ID=Ggra1398.t1|Name=Ggra1398.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=163bp
MGVGWRRFEILPIYHIEDQGGRRRYLKYTPEYLHCSATFRAPSVAPGAGV
IMCQTLGRERTSFRIAGTGVVAELDTVFKVVKKLKLVGEPVKVHKNTAFI
KGTFNSELEVSQYLGASVRTVSGVRGTIKKAITPSSPGNMLDRDLAKSPA
GTFRAGFEDKIL*
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mRNA from alignment at tig00000169_pilon:114969..115457+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1398.t1 ID=Ggra1398.t1|Name=Ggra1398.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00000169_pilon:114969..115457+ (Gracilaria gracilis GNS1m male)
ATGGGCGTTGGCTGGCGCCGATTTGAGATACTTCCTATATACCATATTGA
GGATCAAGGTGGAAGACGGAGGTATTTGAAGTATACCCCTGAATATTTGC
ACTGCAGTGCCACATTCCGGGCACCAAGTGTGGCCCCAGGGGCTGGCGTT
ATCATGTGCCAAACGCTTGGAAGAGAGCGGACAAGTTTTCGTATAGCTGG
AACTGGTGTGGTTGCTGAACTGGATACCGTTTTCAAAGTAGTGAAGAAAT
TGAAGTTGGTTGGAGAACCAGTAAAAGTGCATAAGAACACAGCATTTATT
AAGGGCACGTTCAACTCAGAACTCGAAGTTTCCCAATACCTTGGTGCCAG
TGTGCGAACGGTAAGTGGTGTTCGAGGAACTATAAAGAAAGCCATAACTC
CGAGCTCTCCAGGAAACATGCTTGATCGTGACCTGGCTAAGAGCCCAGCT
GGTACTTTTCGTGCTGGGTTTGAAGATAAGATCTTGTGA
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Coding sequence (CDS) from alignment at tig00000169_pilon:114969..115457+

>Ggra1398.t1 ID=Ggra1398.t1|Name=Ggra1398.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=489bp|location=Sequence derived from alignment at tig00000169_pilon:114969..115457+ (Gracilaria gracilis GNS1m male)
ATGGGCGTTGGCTGGCGCCGATTTGAGATACTTCCTATATACCATATTGA
GGATCAAGGTGGAAGACGGAGGTATTTGAAGTATACCCCTGAATATTTGC
ACTGCAGTGCCACATTCCGGGCACCAAGTGTGGCCCCAGGGGCTGGCGTT
ATCATGTGCCAAACGCTTGGAAGAGAGCGGACAAGTTTTCGTATAGCTGG
AACTGGTGTGGTTGCTGAACTGGATACCGTTTTCAAAGTAGTGAAGAAAT
TGAAGTTGGTTGGAGAACCAGTAAAAGTGCATAAGAACACAGCATTTATT
AAGGGCACGTTCAACTCAGAACTCGAAGTTTCCCAATACCTTGGTGCCAG
TGTGCGAACGGTAAGTGGTGTTCGAGGAACTATAAAGAAAGCCATAACTC
CGAGCTCTCCAGGAAACATGCTTGATCGTGACCTGGCTAAGAGCCCAGCT
GGTACTTTTCGTGCTGGGTTTGAAGATAAGATCTTGTGA
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